RNA–Protein interactions for RNA: ENST00000540896.1

CLTCL1-206, Transcript of clathrin heavy chain like 1, humanhuman

TSL 4

Gene CLTCL1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-206ENST00000540896 AEBP2Q6ZN18 517 aaPredicted RBP21.53■■□□□ 1.04
CLTCL1-206ENST00000540896 CHIC1Q5VXU3 224 aa20.61■□□□□ 0.89
CLTCL1-206ENST00000540896 SENP3Q9H4L4 574 aaPredicted RBP18.54■□□□□ 0.56
CLTCL1-206ENST00000540896 PHF23Q9BUL5 403 aaPredicted RBP18.25■□□□□ 0.51
CLTCL1-206ENST00000540896 FOXD1Q16676 465 aa17.16■□□□□ 0.34
CLTCL1-206ENST00000540896 PLPPR3Q6T4P5 718 aa16.56■□□□□ 0.24
CLTCL1-206ENST00000540896 MSH5O43196 834 aa16.18■□□□□ 0.18
CLTCL1-206ENST00000540896 PIAS4Q8N2W9 510 aaPredicted RBP16.09■□□□□ 0.17
CLTCL1-206ENST00000540896 PPP6R1Q9UPN7 881 aa16.03■□□□□ 0.16
CLTCL1-206ENST00000540896 ADRA2BP18089 450 aa16.01■□□□□ 0.15
CLTCL1-206ENST00000540896 POTEDQ86YR6 584 aa15.57■□□□□ 0.08
CLTCL1-206ENST00000540896 NISCHQ9Y2I1 1504 aa15.3■□□□□ 0.04
CLTCL1-206ENST00000540896 SCAF1Q9H7N4 1312 aaKnown RBP14.88□□□□□ -0.03
CLTCL1-206ENST00000540896 MAPK8IP2Q13387 824 aaPredicted RBP14.66□□□□□ -0.06
CLTCL1-206ENST00000540896 DMRT2Q9Y5R5 561 aa14.66□□□□□ -0.06
CLTCL1-206ENST00000540896 PPP4R3CPQ6ZMV5 832 aa14.46□□□□□ -0.09
CLTCL1-206ENST00000540896 CNKSR2Q8WXI2 1034 aa14.24□□□□□ -0.13
CLTCL1-206ENST00000540896 HOXD11P31277 338 aaPredicted RBP14.15□□□□□ -0.14
CLTCL1-206ENST00000540896 RNF216Q9NWF9 866 aaPredicted RBP14.1□□□□□ -0.15
CLTCL1-206ENST00000540896 DCAF8L1A6NGE4 600 aa14.06□□□□□ -0.16
CLTCL1-206ENST00000540896 NCBP3Q53F19 620 aaKnown RBP14.06□□□□□ -0.16
CLTCL1-206ENST00000540896 CACNB1Q02641 598 aaPredicted RBP13.81□□□□□ -0.2
CLTCL1-206ENST00000540896 DNAJC5BQ9UF47 199 aa13.77□□□□□ -0.21
CLTCL1-206ENST00000540896 RNF39Q9H2S5 420 aa13.73□□□□□ -0.21
CLTCL1-206ENST00000540896 NPM3O75607 178 aaKnown RBP13.69□□□□□ -0.22
CLTCL1-206ENST00000540896 C1QBPQ07021 282 aaKnown RBP13.62□□□□□ -0.23
CLTCL1-206ENST00000540896 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.52□□□□□ -0.25
CLTCL1-206ENST00000540896 CCDC180Q9P1Z9 1646 aa13.52□□□□□ -0.25
CLTCL1-206ENST00000540896 KCNA4P22459 653 aa13.44□□□□□ -0.26
CLTCL1-206ENST00000540896 U3KPZ7 1027 aaPredicted RBP13.15□□□□□ -0.3
CLTCL1-206ENST00000540896 ABCC9O60706 1549 aa13.13□□□□□ -0.31
CLTCL1-206ENST00000540896 SLC4A2P04920 1241 aa13.03□□□□□ -0.32
CLTCL1-206ENST00000540896 APLP2Q06481 763 aa13.02□□□□□ -0.33
CLTCL1-206ENST00000540896 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.99□□□□□ -0.33
CLTCL1-206ENST00000540896 HNRNPUL2Q1KMD3 747 aaKnown RBP12.99□□□□□ -0.33
CLTCL1-206ENST00000540896 CAPN15O75808 1086 aa12.98□□□□□ -0.33
CLTCL1-206ENST00000540896 SPINK5Q9NQ38 1064 aaPredicted RBP12.91□□□□□ -0.34
CLTCL1-206ENST00000540896 SAMD1Q6SPF0 538 aaPredicted RBP12.87□□□□□ -0.35
CLTCL1-206ENST00000540896 DSG3P32926 999 aa12.86□□□□□ -0.35
CLTCL1-206ENST00000540896 ZNF219Q9P2Y4 722 aaPredicted RBP12.83□□□□□ -0.36
CLTCL1-206ENST00000540896 DCAF8L2P0C7V8 631 aa12.81□□□□□ -0.36
CLTCL1-206ENST00000540896 SLC4A1APQ9BWU0 796 aaKnown RBP12.78□□□□□ -0.36
CLTCL1-206ENST00000540896 TRHP20396 242 aaPredicted RBP12.77□□□□□ -0.37
CLTCL1-206ENST00000540896 ZCCHC6Q5VYS8 1495 aaKnown RBP12.76□□□□□ -0.37
CLTCL1-206ENST00000540896 MYCNP04198 464 aaPredicted RBP12.74□□□□□ -0.37
CLTCL1-206ENST00000540896 NACADO15069 1562 aa12.69□□□□□ -0.38
CLTCL1-206ENST00000540896 RB1CC1Q8TDY2 1594 aa12.67□□□□□ -0.38
CLTCL1-206ENST00000540896 DCAF1Q9Y4B6 1507 aa12.64□□□□□ -0.39
CLTCL1-206ENST00000540896 MYO15BQ96JP2 1530 aa12.63□□□□□ -0.39
CLTCL1-206ENST00000540896 ABCB7O75027 752 aa12.61□□□□□ -0.39
CLTCL1-206ENST00000540896 FOXD4L1Q9NU39 408 aa12.61□□□□□ -0.39
CLTCL1-206ENST00000540896 POLA2Q14181 598 aa12.44□□□□□ -0.42
CLTCL1-206ENST00000540896 RBM42Q9BTD8 480 aaKnown RBP12.4□□□□□ -0.42
CLTCL1-206ENST00000540896 SCRIBQ14160 1630 aa12.37□□□□□ -0.43
CLTCL1-206ENST00000540896 UNC13AQ9UPW8 1703 aa12.37□□□□□ -0.43
CLTCL1-206ENST00000540896 SHROOM4Q9ULL8 1493 aa12.34□□□□□ -0.43
CLTCL1-206ENST00000540896 ZBTB12Q9Y330 459 aaPredicted RBP12.33□□□□□ -0.44
CLTCL1-206ENST00000540896 PABPN1Q86U42 306 aaKnown RBP eCLIP12.32□□□□□ -0.44
CLTCL1-206ENST00000540896 ATXN8OSP0DMR3 200 aa12.3□□□□□ -0.44
CLTCL1-206ENST00000540896 ZBTB22O15209 634 aa12.28□□□□□ -0.44
CLTCL1-206ENST00000540896 ATF5Q9Y2D1 282 aaPredicted RBP12.28□□□□□ -0.44
CLTCL1-206ENST00000540896 BICRAQ9NZM4 1560 aa12.27□□□□□ -0.44
CLTCL1-206ENST00000540896 POTEHQ6S545 545 aa12.25□□□□□ -0.45
CLTCL1-206ENST00000540896 AKT1S1Q96B36 256 aa12.09□□□□□ -0.47
CLTCL1-206ENST00000540896 FBLN2P98095 1184 aa12.02□□□□□ -0.49
CLTCL1-206ENST00000540896 CHRDL2Q6WN34 429 aa12.01□□□□□ -0.49
CLTCL1-206ENST00000540896 OSCARQ8IYS5 282 aa11.99□□□□□ -0.49
CLTCL1-206ENST00000540896 EIF4G1Q04637 1599 aaKnown RBP11.94□□□□□ -0.5
CLTCL1-206ENST00000540896 CECR2Q9BXF3 1484 aa11.92□□□□□ -0.5
CLTCL1-206ENST00000540896 REM2Q8IYK8 340 aaPredicted RBP11.91□□□□□ -0.5
CLTCL1-206ENST00000540896 SPDYE2BA6NHP3 402 aa11.89□□□□□ -0.51
CLTCL1-206ENST00000540896 SPDYE6P0CI01 402 aa11.89□□□□□ -0.51
CLTCL1-206ENST00000540896 SPDYE2Q495Y8 402 aa11.89□□□□□ -0.51
CLTCL1-206ENST00000540896 CC2D2AQ9P2K1 1620 aa11.87□□□□□ -0.51
CLTCL1-206ENST00000540896 BAZ1AQ9NRL2 1556 aaPredicted RBP11.84□□□□□ -0.51
CLTCL1-206ENST00000540896 SMARCA4P51532 1647 aa11.83□□□□□ -0.52
CLTCL1-206ENST00000540896 SUPT5HO00267 1087 aaKnown RBP11.83□□□□□ -0.52
CLTCL1-206ENST00000540896 CSRNP3Q8WYN3 585 aa11.83□□□□□ -0.52
CLTCL1-206ENST00000540896 MROH2BQ7Z745 1585 aa11.79□□□□□ -0.52
CLTCL1-206ENST00000540896 MKRN4PQ13434 485 aaPredicted RBP11.75□□□□□ -0.53
CLTCL1-206ENST00000540896 PITPNM1O00562 1244 aa11.74□□□□□ -0.53
CLTCL1-206ENST00000540896 ATAD2BQ9ULI0 1458 aa11.74□□□□□ -0.53
CLTCL1-206ENST00000540896 SMARCA2P51531 1590 aa11.73□□□□□ -0.53
CLTCL1-206ENST00000540896 ZNF692Q9BU19 519 aaPredicted RBP11.73□□□□□ -0.53
CLTCL1-206ENST00000540896 RSF1Q96T23 1441 aaPredicted RBP11.72□□□□□ -0.53
CLTCL1-206ENST00000540896 NCAPD3P42695 1498 aa11.71□□□□□ -0.53
CLTCL1-206ENST00000540896 PEG3Q9GZU2 1588 aa11.71□□□□□ -0.54
CLTCL1-206ENST00000540896 PIP4P2Q8N4L2 257 aa11.7□□□□□ -0.54
CLTCL1-206ENST00000540896 EHMT2Q96KQ7 1210 aa11.7□□□□□ -0.54
CLTCL1-206ENST00000540896 WIZO95785 1651 aa11.68□□□□□ -0.54
CLTCL1-206ENST00000540896 SPDYE1Q8NFV5 336 aaPredicted RBP11.68□□□□□ -0.54
CLTCL1-206ENST00000540896 FXR2P51116 673 aaKnown RBP eCLIP11.67□□□□□ -0.54
CLTCL1-206ENST00000540896 SSUH2Q9Y2M2 353 aa11.67□□□□□ -0.54
CLTCL1-206ENST00000540896 BAZ1BQ9UIG0 1483 aaKnown RBP11.65□□□□□ -0.54
CLTCL1-206ENST00000540896 HMGXB3Q12766 1538 aa11.65□□□□□ -0.55
CLTCL1-206ENST00000540896 CLEC11AQ9Y240 323 aa11.59□□□□□ -0.55
CLTCL1-206ENST00000540896 TOP2AP11388 1531 aaKnown RBP11.55□□□□□ -0.56
CLTCL1-206ENST00000540896 HAX1O00165 279 aa11.54□□□□□ -0.56
CLTCL1-206ENST00000540896 SP7Q8TDD2 431 aaPredicted RBP11.52□□□□□ -0.57
CLTCL1-206ENST00000540896 PRKAR2AP13861 404 aaKnown RBP11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms