RNA–Protein interactions for RNA: ENST00000539563.5

LSAMP-207, Transcript of limbic system associated membrane protein, humanhuman

TSL 3 BASIC

Gene LSAMP, Length 8,821 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-207ENST00000539563 PLEKHD1A6NEE1 506 aa8.59□□□□□ -1.03
LSAMP-207ENST00000539563 CDCA8Q53HL2 280 aa8.58□□□□□ -1.04
LSAMP-207ENST00000539563 KIF27Q86VH2 1401 aa8.58□□□□□ -1.04
LSAMP-207ENST00000539563 EIF5BO60841 1220 aaKnown RBP8.57□□□□□ -1.04
LSAMP-207ENST00000539563 CEP164Q9UPV0 1460 aa8.57□□□□□ -1.04
LSAMP-207ENST00000539563 DDRGK1Q96HY6 314 aa8.56□□□□□ -1.04
LSAMP-207ENST00000539563 CEP162Q5TB80 1403 aa8.56□□□□□ -1.04
LSAMP-207ENST00000539563 WRNQ14191 1432 aaPredicted RBP eCLIP8.55□□□□□ -1.04
LSAMP-207ENST00000539563 BAZ1AQ9NRL2 1556 aaPredicted RBP8.55□□□□□ -1.04
LSAMP-207ENST00000539563 RRP7BPQ9NSQ0 103 aa8.55□□□□□ -1.04
LSAMP-207ENST00000539563 BECN1Q14457 450 aa8.55□□□□□ -1.04
LSAMP-207ENST00000539563 SCAF1Q9H7N4 1312 aaKnown RBP8.55□□□□□ -1.04
LSAMP-207ENST00000539563 CFAP53Q96M91 514 aa8.54□□□□□ -1.04
LSAMP-207ENST00000539563 PPP1R15AO75807 674 aaPredicted RBP8.54□□□□□ -1.04
LSAMP-207ENST00000539563 GLIPR1L2Q4G1C9 344 aa8.54□□□□□ -1.04
LSAMP-207ENST00000539563 ANP32EQ9BTT0 268 aa8.53□□□□□ -1.04
LSAMP-207ENST00000539563 KCNH8Q96L42 1107 aa8.52□□□□□ -1.05
LSAMP-207ENST00000539563 TNIKQ9UKE5 1360 aa8.52□□□□□ -1.05
LSAMP-207ENST00000539563 NCLP19338 710 aaKnown RBP8.51□□□□□ -1.05
LSAMP-207ENST00000539563 MIER1Q8N108 512 aa8.5□□□□□ -1.05
LSAMP-207ENST00000539563 CFDP1Q9UEE9 299 aaPredicted RBP8.5□□□□□ -1.05
LSAMP-207ENST00000539563 FHAD1B1AJZ9 1412 aa8.5□□□□□ -1.05
LSAMP-207ENST00000539563 KNSTRNQ9Y448 316 aa8.5□□□□□ -1.05
LSAMP-207ENST00000539563 ERCC6Q03468 1493 aa8.5□□□□□ -1.05
LSAMP-207ENST00000539563 CDK11BP21127 795 aaKnown RBP8.5□□□□□ -1.05
LSAMP-207ENST00000539563 NBR1Q14596 966 aa8.5□□□□□ -1.05
LSAMP-207ENST00000539563 CASC1Q6TDU7 716 aa8.5□□□□□ -1.05
LSAMP-207ENST00000539563 C14orf37Q86TY3 774 aa8.49□□□□□ -1.05
LSAMP-207ENST00000539563 PNNQ9H307 717 aaKnown RBP8.48□□□□□ -1.05
LSAMP-207ENST00000539563 GOLGA6L22H0YM25 854 aa8.48□□□□□ -1.05
LSAMP-207ENST00000539563 RGL3Q3MIN7 710 aa8.48□□□□□ -1.05
LSAMP-207ENST00000539563 ZBTB7CA1YPR0 619 aa8.47□□□□□ -1.05
LSAMP-207ENST00000539563 HIRIP3Q9BW71 556 aaPredicted RBP8.47□□□□□ -1.05
LSAMP-207ENST00000539563 CARD11Q9BXL7 1154 aa8.46□□□□□ -1.05
LSAMP-207ENST00000539563 CHMP4BQ9H444 224 aaKnown RBP8.46□□□□□ -1.05
LSAMP-207ENST00000539563 MYO15BQ96JP2 1530 aa8.46□□□□□ -1.06
LSAMP-207ENST00000539563 A0A0G2JS52 829 aa8.46□□□□□ -1.06
LSAMP-207ENST00000539563 FTSJ3Q8IY81 847 aaKnown RBP8.46□□□□□ -1.06
LSAMP-207ENST00000539563 NUDCQ9Y266 331 aa8.46□□□□□ -1.06
LSAMP-207ENST00000539563 ARID4BQ4LE39 1312 aaPredicted RBP8.45□□□□□ -1.06
LSAMP-207ENST00000539563 TRIM44Q96DX7 344 aaPredicted RBP8.45□□□□□ -1.06
LSAMP-207ENST00000539563 MS4A1P11836 297 aa8.44□□□□□ -1.06
LSAMP-207ENST00000539563 HAP1P54257 671 aaPredicted RBP8.44□□□□□ -1.06
LSAMP-207ENST00000539563 IRX6P78412 446 aaPredicted RBP8.44□□□□□ -1.06
LSAMP-207ENST00000539563 KANK1Q14678 1352 aa8.44□□□□□ -1.06
LSAMP-207ENST00000539563 MAPK8IP3Q9UPT6 1336 aa8.44□□□□□ -1.06
LSAMP-207ENST00000539563 EIF4G1Q04637 1599 aaKnown RBP8.43□□□□□ -1.06
LSAMP-207ENST00000539563 ARXQ96QS3 562 aa8.42□□□□□ -1.06
LSAMP-207ENST00000539563 POGKQ9P215 609 aa8.42□□□□□ -1.06
LSAMP-207ENST00000539563 CCNB3Q8WWL7 1395 aa8.42□□□□□ -1.06
LSAMP-207ENST00000539563 HDGFP51858 240 aaKnown RBP8.42□□□□□ -1.06
LSAMP-207ENST00000539563 ZRSR1Q15695 479 aaKnown RBP8.42□□□□□ -1.06
LSAMP-207ENST00000539563 SMARCA2P51531 1590 aa8.41□□□□□ -1.06
LSAMP-207ENST00000539563 PPM1GO15355 546 aaPredicted RBP8.41□□□□□ -1.06
LSAMP-207ENST00000539563 UNC13AQ9UPW8 1703 aa8.4□□□□□ -1.07
LSAMP-207ENST00000539563 TMF1P82094 1093 aa8.4□□□□□ -1.07
LSAMP-207ENST00000539563 TIMELESSQ9UNS1 1208 aa8.39□□□□□ -1.07
LSAMP-207ENST00000539563 SUPT16HQ9Y5B9 1047 aaKnown RBP8.39□□□□□ -1.07
LSAMP-207ENST00000539563 LAS1LQ9Y4W2 734 aaKnown RBP8.39□□□□□ -1.07
LSAMP-207ENST00000539563 CARMIL1Q5VZK9 1371 aa8.38□□□□□ -1.07
LSAMP-207ENST00000539563 ARHGAP35Q9NRY4 1499 aa8.38□□□□□ -1.07
LSAMP-207ENST00000539563 PLEKHG5O94827 1062 aa8.38□□□□□ -1.07
LSAMP-207ENST00000539563 CUX2O14529 1486 aa8.38□□□□□ -1.07
LSAMP-207ENST00000539563 PPP4R2Q9NY27 417 aa8.38□□□□□ -1.07
LSAMP-207ENST00000539563 SENP3Q9H4L4 574 aaPredicted RBP8.38□□□□□ -1.07
LSAMP-207ENST00000539563 CFAP44Q96MT7 982 aa8.37□□□□□ -1.07
LSAMP-207ENST00000539563 CARMIL2Q6F5E8 1435 aa8.35□□□□□ -1.07
LSAMP-207ENST00000539563 PTMAP06454 111 aaKnown RBP8.35□□□□□ -1.07
LSAMP-207ENST00000539563 SETD5Q9C0A6 1442 aa8.35□□□□□ -1.07
LSAMP-207ENST00000539563 CC2D1BQ5T0F9 858 aaKnown RBP8.34□□□□□ -1.07
LSAMP-207ENST00000539563 HSP90AB1P08238 724 aaKnown RBP8.34□□□□□ -1.07
LSAMP-207ENST00000539563 DCAF11Q8TEB1 546 aa8.33□□□□□ -1.08
LSAMP-207ENST00000539563 U2SURPO15042 1029 aaKnown RBP8.33□□□□□ -1.08
LSAMP-207ENST00000539563 NEUROD2Q15784 382 aa8.33□□□□□ -1.08
LSAMP-207ENST00000539563 OS9Q13438 667 aaPredicted RBP8.33□□□□□ -1.08
LSAMP-207ENST00000539563 SIN3AQ96ST3 1273 aa8.33□□□□□ -1.08
LSAMP-207ENST00000539563 GOLGA6L6A8MZA4 724 aa8.32□□□□□ -1.08
LSAMP-207ENST00000539563 TNNT2P45379 298 aaPredicted RBP8.32□□□□□ -1.08
LSAMP-207ENST00000539563 FRAT1Q92837 279 aaPredicted RBP8.32□□□□□ -1.08
LSAMP-207ENST00000539563 PDS5BQ9NTI5 1447 aa8.32□□□□□ -1.08
LSAMP-207ENST00000539563 CCER2I3L3R5 266 aa8.32□□□□□ -1.08
LSAMP-207ENST00000539563 NPHP1O15259 732 aa8.32□□□□□ -1.08
LSAMP-207ENST00000539563 DNTTIP2Q5QJE6 756 aaKnown RBP8.32□□□□□ -1.08
LSAMP-207ENST00000539563 LMOD2Q6P5Q4 547 aa8.31□□□□□ -1.08
LSAMP-207ENST00000539563 VPS8Q8N3P4 1428 aa8.31□□□□□ -1.08
LSAMP-207ENST00000539563 CCDC88BA6NC98 1476 aa8.31□□□□□ -1.08
LSAMP-207ENST00000539563 FMN1Q68DA7 1419 aa8.31□□□□□ -1.08
LSAMP-207ENST00000539563 WIZO95785 1651 aa8.31□□□□□ -1.08
LSAMP-207ENST00000539563 MCCP23508 829 aa8.31□□□□□ -1.08
LSAMP-207ENST00000539563 KCNJ4P48050 445 aa8.3□□□□□ -1.08
LSAMP-207ENST00000539563 SRPK2P78362 688 aaKnown RBP8.3□□□□□ -1.08
LSAMP-207ENST00000539563 ERICH6BQ5W0A0 696 aa8.3□□□□□ -1.08
LSAMP-207ENST00000539563 CECR2Q9BXF3 1484 aa8.3□□□□□ -1.08
LSAMP-207ENST00000539563 FGD1P98174 961 aa8.3□□□□□ -1.08
LSAMP-207ENST00000539563 GOLGA2Q08379 1002 aa8.3□□□□□ -1.08
LSAMP-207ENST00000539563 ABCC8Q09428 1581 aa8.29□□□□□ -1.08
LSAMP-207ENST00000539563 CALD1Q05682 793 aaKnown RBP8.29□□□□□ -1.08
LSAMP-207ENST00000539563 MORC1Q86VD1 984 aa8.29□□□□□ -1.08
LSAMP-207ENST00000539563 TOP2AP11388 1531 aaKnown RBP8.29□□□□□ -1.08
LSAMP-207ENST00000539563 RTF1Q92541 710 aaKnown RBP8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms