RNA–Protein interactions for RNA: ENST00000538291.5

SCARB1-205, Transcript of scavenger receptor class B member 1, humanhuman

TSL 5

Gene SCARB1, Length 5,527 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB1-205ENST00000538291 SENP3Q9H4L4 574 aaPredicted RBP22.31■■□□□ 1.16
SCARB1-205ENST00000538291 EIF4G2P78344 907 aaKnown RBP eCLIP22.3■■□□□ 1.162e-9■■■■□ 23.9
SCARB1-205ENST00000538291 RRP7BPQ9NSQ0 103 aa22.3■■□□□ 1.16
SCARB1-205ENST00000538291 HAP1P54257 671 aaPredicted RBP22.3■■□□□ 1.16
SCARB1-205ENST00000538291 ARID4BQ4LE39 1312 aaPredicted RBP22.29■■□□□ 1.16
SCARB1-205ENST00000538291 RSF1Q96T23 1441 aaPredicted RBP22.26■■□□□ 1.15
SCARB1-205ENST00000538291 CLIP1P30622 1438 aa22.26■■□□□ 1.15
SCARB1-205ENST00000538291 NACADO15069 1562 aa22.25■■□□□ 1.15
SCARB1-205ENST00000538291 CDK11BP21127 795 aaKnown RBP22.25■■□□□ 1.15
SCARB1-205ENST00000538291 CFAP53Q96M91 514 aa22.21■■□□□ 1.15
SCARB1-205ENST00000538291 DCAF1Q9Y4B6 1507 aa22.21■■□□□ 1.15
SCARB1-205ENST00000538291 RGL3Q3MIN7 710 aa22.2■■□□□ 1.14
SCARB1-205ENST00000538291 EIF5BO60841 1220 aaKnown RBP22.19■■□□□ 1.14
SCARB1-205ENST00000538291 CDCA8Q53HL2 280 aa22.19■■□□□ 1.14
SCARB1-205ENST00000538291 HIRIP3Q9BW71 556 aaPredicted RBP22.16■■□□□ 1.14
SCARB1-205ENST00000538291 CFDP1Q9UEE9 299 aaPredicted RBP22.15■■□□□ 1.14
SCARB1-205ENST00000538291 ARXQ96QS3 562 aa22.12■■□□□ 1.13
SCARB1-205ENST00000538291 KNSTRNQ9Y448 316 aa22.11■■□□□ 1.13
SCARB1-205ENST00000538291 PPM1GO15355 546 aaPredicted RBP22.09■■□□□ 1.13
SCARB1-205ENST00000538291 NCLP19338 710 aaKnown RBP22.07■■□□□ 1.12
SCARB1-205ENST00000538291 IRX6P78412 446 aaPredicted RBP22.05■■□□□ 1.12
SCARB1-205ENST00000538291 EEA1Q15075 1411 aa22.05■■□□□ 1.12
SCARB1-205ENST00000538291 NBR1Q14596 966 aa22.05■■□□□ 1.12
SCARB1-205ENST00000538291 BECN1Q14457 450 aa22.04■■□□□ 1.12
SCARB1-205ENST00000538291 LMOD2Q6P5Q4 547 aa22.03■■□□□ 1.12
SCARB1-205ENST00000538291 POGKQ9P215 609 aa22.02■■□□□ 1.12
SCARB1-205ENST00000538291 GOLGA3Q08378 1498 aa22.02■■□□□ 1.12
SCARB1-205ENST00000538291 CARD11Q9BXL7 1154 aa22.01■■□□□ 1.11
SCARB1-205ENST00000538291 MAPK8IP3Q9UPT6 1336 aa22■■□□□ 1.11
SCARB1-205ENST00000538291 NUDCQ9Y266 331 aa21.99■■□□□ 1.11
SCARB1-205ENST00000538291 GOLGA6L22H0YM25 854 aa21.97■■□□□ 1.11
SCARB1-205ENST00000538291 MIER1Q8N108 512 aa21.97■■□□□ 1.11
SCARB1-205ENST00000538291 CASC1Q6TDU7 716 aa21.97■■□□□ 1.11
SCARB1-205ENST00000538291 DDRGK1Q96HY6 314 aa21.97■■□□□ 1.11
SCARB1-205ENST00000538291 FTSJ3Q8IY81 847 aaKnown RBP21.96■■□□□ 1.11
SCARB1-205ENST00000538291 KIF27Q86VH2 1401 aa21.96■■□□□ 1.11
SCARB1-205ENST00000538291 ERCC6Q03468 1493 aa21.94■■□□□ 1.1
SCARB1-205ENST00000538291 WRNQ14191 1432 aaPredicted RBP eCLIP21.93■■□□□ 1.1
SCARB1-205ENST00000538291 NPHP1O15259 732 aa21.93■■□□□ 1.1
SCARB1-205ENST00000538291 ZRSR1Q15695 479 aaKnown RBP21.93■■□□□ 1.1
SCARB1-205ENST00000538291 BAZ1BQ9UIG0 1483 aaKnown RBP21.93■■□□□ 1.1
SCARB1-205ENST00000538291 GLIPR1L2Q4G1C9 344 aa21.92■■□□□ 1.1
SCARB1-205ENST00000538291 LAS1LQ9Y4W2 734 aaKnown RBP21.92■■□□□ 1.1
SCARB1-205ENST00000538291 ANP32EQ9BTT0 268 aa21.91■■□□□ 1.1
SCARB1-205ENST00000538291 CEP162Q5TB80 1403 aa21.91■■□□□ 1.1
SCARB1-205ENST00000538291 NEUROD2Q15784 382 aa21.91■■□□□ 1.1
SCARB1-205ENST00000538291 HDGFP51858 240 aaKnown RBP21.85■■□□□ 1.09
SCARB1-205ENST00000538291 CHMP4BQ9H444 224 aaKnown RBP21.84■■□□□ 1.09
SCARB1-205ENST00000538291 TRHP20396 242 aaPredicted RBP21.83■■□□□ 1.09
SCARB1-205ENST00000538291 TRIM44Q96DX7 344 aaPredicted RBP21.83■■□□□ 1.08
SCARB1-205ENST00000538291 SENP3-EIF4A1A0A087X0R7 540 aa21.81■■□□□ 1.08
SCARB1-205ENST00000538291 PNNQ9H307 717 aaKnown RBP21.81■■□□□ 1.08
SCARB1-205ENST00000538291 CCNB3Q8WWL7 1395 aa21.8■■□□□ 1.08
SCARB1-205ENST00000538291 TNNT2P45379 298 aaPredicted RBP21.8■■□□□ 1.08
SCARB1-205ENST00000538291 KANK1Q14678 1352 aa21.8■■□□□ 1.08
SCARB1-205ENST00000538291 U2SURPO15042 1029 aaKnown RBP21.79■■□□□ 1.08
SCARB1-205ENST00000538291 OS9Q13438 667 aaPredicted RBP21.78■■□□□ 1.08
SCARB1-205ENST00000538291 CEP164Q9UPV0 1460 aa21.78■■□□□ 1.08
SCARB1-205ENST00000538291 MS4A1P11836 297 aa21.77■■□□□ 1.08
SCARB1-205ENST00000538291 FRAT1Q92837 279 aaPredicted RBP21.75■■□□□ 1.07
SCARB1-205ENST00000538291 TULP1O00294 542 aaPredicted RBP21.75■■□□□ 1.07
SCARB1-205ENST00000538291 MLECQ14165 292 aa21.75■■□□□ 1.07
SCARB1-205ENST00000538291 TNIKQ9UKE5 1360 aa21.74■■□□□ 1.07
SCARB1-205ENST00000538291 PTMAP06454 111 aaKnown RBP21.73■■□□□ 1.07
SCARB1-205ENST00000538291 GOLGA2Q08379 1002 aa21.73■■□□□ 1.07
SCARB1-205ENST00000538291 TMF1P82094 1093 aa21.72■■□□□ 1.07
SCARB1-205ENST00000538291 FGD1P98174 961 aa21.72■■□□□ 1.07
SCARB1-205ENST00000538291 CC2D1BQ5T0F9 858 aaKnown RBP21.72■■□□□ 1.07
SCARB1-205ENST00000538291 TPRNQ4KMQ1 711 aa21.69■■□□□ 1.06
SCARB1-205ENST00000538291 SRPK2P78362 688 aaKnown RBP21.68■■□□□ 1.06
SCARB1-205ENST00000538291 SUPT16HQ9Y5B9 1047 aaKnown RBP21.68■■□□□ 1.06
SCARB1-205ENST00000538291 DCAF11Q8TEB1 546 aa21.68■■□□□ 1.06
SCARB1-205ENST00000538291 KCNJ4P48050 445 aa21.68■■□□□ 1.06
SCARB1-205ENST00000538291 SIN3AQ96ST3 1273 aa21.67■■□□□ 1.06
SCARB1-205ENST00000538291 FHAD1B1AJZ9 1412 aa21.66■■□□□ 1.06
SCARB1-205ENST00000538291 BAZ1AQ9NRL2 1556 aaPredicted RBP21.66■■□□□ 1.06
SCARB1-205ENST00000538291 RGS3P49796 1198 aa21.65■■□□□ 1.06
SCARB1-205ENST00000538291 TAOK2Q9UL54 1235 aa21.65■■□□□ 1.06
SCARB1-205ENST00000538291 SOX12O15370 315 aa21.65■■□□□ 1.06
SCARB1-205ENST00000538291 EIF4G1Q04637 1599 aaKnown RBP21.61■■□□□ 1.05
SCARB1-205ENST00000538291 NAP1L2Q9ULW6 460 aaPredicted RBP21.6■■□□□ 1.05
SCARB1-205ENST00000538291 MORC1Q86VD1 984 aa21.6■■□□□ 1.05
SCARB1-205ENST00000538291 GGT6Q6P531 493 aa21.59■■□□□ 1.05
SCARB1-205ENST00000538291 CARMIL1Q5VZK9 1371 aa21.58■■□□□ 1.05
SCARB1-205ENST00000538291 DNTTIP2Q5QJE6 756 aaKnown RBP21.58■■□□□ 1.05
SCARB1-205ENST00000538291 SAFB2Q14151 953 aaKnown RBP eCLIP21.58■■□□□ 1.04
SCARB1-205ENST00000538291 RTF1Q92541 710 aaKnown RBP21.57■■□□□ 1.04
SCARB1-205ENST00000538291 PPP4R2Q9NY27 417 aa21.57■■□□□ 1.04
SCARB1-205ENST00000538291 HSP90AB1P08238 724 aaKnown RBP21.56■■□□□ 1.04
SCARB1-205ENST00000538291 GOLGA6L6A8MZA4 724 aa21.54■■□□□ 1.04
SCARB1-205ENST00000538291 HDGFL2Q7Z4V5 671 aaPredicted RBP21.54■■□□□ 1.04
SCARB1-205ENST00000538291 PLCB2Q00722 1185 aa21.53■■□□□ 1.04
SCARB1-205ENST00000538291 CUX2O14529 1486 aa21.53■■□□□ 1.04
SCARB1-205ENST00000538291 STK26Q9P289 416 aa21.51■■□□□ 1.03
SCARB1-205ENST00000538291 GOLGA6L4A6NEF3 574 aa21.49■■□□□ 1.03
SCARB1-205ENST00000538291 NRDCO43847 1150 aa21.49■■□□□ 1.03
SCARB1-205ENST00000538291 MCCP23508 829 aa21.48■■□□□ 1.03
SCARB1-205ENST00000538291 TIMELESSQ9UNS1 1208 aa21.48■■□□□ 1.03
SCARB1-205ENST00000538291 CARMIL2Q6F5E8 1435 aa21.48■■□□□ 1.03
SCARB1-205ENST00000538291 CSB-PGBD3P0DP91 1061 aa21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms