RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 PROM2Q8N271 834 aa12.37□□□□□ -0.43
USP48-215ENST00000534705 ATMINO43313 823 aaPredicted RBP12.34□□□□□ -0.43
USP48-215ENST00000534705 METRNQ9UJH8 293 aa12.34□□□□□ -0.43
USP48-215ENST00000534705 PLEKHG5O94827 1062 aa12.33□□□□□ -0.44
USP48-215ENST00000534705 TSPYL2Q9H2G4 693 aaPredicted RBP12.33□□□□□ -0.44
USP48-215ENST00000534705 MAMSTRQ6ZN01 415 aa12.31□□□□□ -0.44
USP48-215ENST00000534705 CCDC61Q9Y6R9 512 aa12.29□□□□□ -0.44
USP48-215ENST00000534705 POTEMA6NI47 508 aa12.26□□□□□ -0.45
USP48-215ENST00000534705 KIF12Q96FN5 646 aa12.24□□□□□ -0.45
USP48-215ENST00000534705 POTEGQ6S5H5 508 aa12.22□□□□□ -0.45
USP48-215ENST00000534705 MIER1Q8N108 512 aa12.22□□□□□ -0.45
USP48-215ENST00000534705 ATN1P54259 1190 aaPredicted RBP12.21□□□□□ -0.45
USP48-215ENST00000534705 SCUBE2Q9NQ36 999 aa12.2□□□□□ -0.46
USP48-215ENST00000534705 PCDH10Q9P2E7 1040 aa12.2□□□□□ -0.46
USP48-215ENST00000534705 POTEJP0CG39 1038 aa12.17□□□□□ -0.46
USP48-215ENST00000534705 TIE1P35590 1138 aa12.16□□□□□ -0.46
USP48-215ENST00000534705 BMP2KQ9NSY1 1161 aaPredicted RBP12.15□□□□□ -0.46
USP48-215ENST00000534705 MAP3K13O43283 966 aa12.14□□□□□ -0.47
USP48-215ENST00000534705 RASEFQ8IZ41 740 aa12.12□□□□□ -0.47
USP48-215ENST00000534705 PLCD3Q8N3E9 789 aa12.1□□□□□ -0.47
USP48-215ENST00000534705 ZBTB47Q9UFB7 747 aaPredicted RBP12.1□□□□□ -0.47
USP48-215ENST00000534705 SGIP1Q9BQI5 828 aa12.09□□□□□ -0.47
USP48-215ENST00000534705 TRPC6Q9Y210 931 aa12.07□□□□□ -0.48
USP48-215ENST00000534705 FAM163AQ96GL9 167 aaPredicted RBP12.06□□□□□ -0.48
USP48-215ENST00000534705 POTEFA5A3E0 1075 aa12.05□□□□□ -0.48
USP48-215ENST00000534705 SEC24BO95487 1268 aa12.05□□□□□ -0.48
USP48-215ENST00000534705 TTLL13PA6NNM8 815 aa12.04□□□□□ -0.48
USP48-215ENST00000534705 IER5LQ5T953 404 aa12.01□□□□□ -0.49
USP48-215ENST00000534705 PCDHB13Q9Y5F0 798 aa12.01□□□□□ -0.49
USP48-215ENST00000534705 LCE2DQ5TA82 110 aaPredicted RBP11.98□□□□□ -0.49
USP48-215ENST00000534705 TRIM35Q9UPQ4 493 aa11.97□□□□□ -0.49
USP48-215ENST00000534705 NUBP1P53384 320 aa11.96□□□□□ -0.49
USP48-215ENST00000534705 COLQQ9Y215 455 aaPredicted RBP11.96□□□□□ -0.49
USP48-215ENST00000534705 FAM212AQ96EL1 285 aa11.94□□□□□ -0.5
USP48-215ENST00000534705 IFNL1Q8IU54 200 aa11.9□□□□□ -0.5
USP48-215ENST00000534705 TMEM106CQ9BVX2 250 aa11.88□□□□□ -0.51
USP48-215ENST00000534705 PLCG2P16885 1265 aa11.85□□□□□ -0.51
USP48-215ENST00000534705 SLAIN1Q8ND83 568 aa11.84□□□□□ -0.51
USP48-215ENST00000534705 FKBP8Q14318 412 aa11.8□□□□□ -0.52
USP48-215ENST00000534705 DCAF8Q5TAQ9 597 aa11.8□□□□□ -0.52
USP48-215ENST00000534705 CDAN1Q8IWY9 1227 aa11.8□□□□□ -0.52
USP48-215ENST00000534705 IRX5P78411 483 aaPredicted RBP11.78□□□□□ -0.52
USP48-215ENST00000534705 OCEL1Q9H607 264 aa11.76□□□□□ -0.53
USP48-215ENST00000534705 FBXO3Q9UK99 471 aa11.76□□□□□ -0.53
USP48-215ENST00000534705 ST18O60284 1047 aa11.74□□□□□ -0.53
USP48-215ENST00000534705 PYGBP11216 843 aa11.73□□□□□ -0.53
USP48-215ENST00000534705 SNPHO15079 494 aa11.71□□□□□ -0.53
USP48-215ENST00000534705 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.69□□□□□ -0.54
USP48-215ENST00000534705 TMEM121BQ9BXQ6 578 aaPredicted RBP11.68□□□□□ -0.54
USP48-215ENST00000534705 GSE1Q14687 1217 aa11.66□□□□□ -0.54
USP48-215ENST00000534705 PCDHB8Q9UN66 801 aa11.66□□□□□ -0.54
USP48-215ENST00000534705 ZNF467Q7Z7K2 595 aaPredicted RBP11.63□□□□□ -0.55
USP48-215ENST00000534705 GOLGA2Q08379 1002 aa11.61□□□□□ -0.55
USP48-215ENST00000534705 KLHL34Q8N239 644 aa11.61□□□□□ -0.55
USP48-215ENST00000534705 MKRN3Q13064 507 aaKnown RBP11.59□□□□□ -0.55
USP48-215ENST00000534705 L3MBTL3Q96JM7 780 aaPredicted RBP11.59□□□□□ -0.55
USP48-215ENST00000534705 CHRM1P11229 460 aaPredicted RBP11.57□□□□□ -0.56
USP48-215ENST00000534705 C3orf67Q6ZVT6 689 aa11.56□□□□□ -0.56
USP48-215ENST00000534705 VASPP50552 380 aaPredicted RBP11.54□□□□□ -0.56
USP48-215ENST00000534705 PDCD7Q8N8D1 485 aaKnown RBP11.53□□□□□ -0.56
USP48-215ENST00000534705 SPNS2Q8IVW8 549 aa11.5□□□□□ -0.57
USP48-215ENST00000534705 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.5□□□□□ -0.573e-12■■■■□ 22.4
USP48-215ENST00000534705 PSEN1P49768 467 aa11.49□□□□□ -0.57
USP48-215ENST00000534705 MMRN1Q13201 1228 aa11.49□□□□□ -0.57
USP48-215ENST00000534705 MARVELD3Q96A59 401 aa11.49□□□□□ -0.57
USP48-215ENST00000534705 EMP3P54852 163 aa11.44□□□□□ -0.58
USP48-215ENST00000534705 PDAP1Q13442 181 aaKnown RBP11.43□□□□□ -0.58
USP48-215ENST00000534705 ILDR1Q86SU0 546 aaPredicted RBP11.41□□□□□ -0.58
USP48-215ENST00000534705 G3V3G9 751 aa11.4□□□□□ -0.58
USP48-215ENST00000534705 SPOCK2Q92563 424 aa11.37□□□□□ -0.59
USP48-215ENST00000534705 HS3ST6Q96QI5 342 aa11.36□□□□□ -0.59
USP48-215ENST00000534705 FAM205CA6NFA0 338 aa11.34□□□□□ -0.59
USP48-215ENST00000534705 CABP2Q9NPB3 220 aa11.34□□□□□ -0.59
USP48-215ENST00000534705 CIZ1Q9ULV3 898 aaPredicted RBP11.34□□□□□ -0.59
USP48-215ENST00000534705 BOLA1Q9Y3E2 137 aa11.34□□□□□ -0.59
USP48-215ENST00000534705 DPY19L2Q6NUT2 758 aa11.32□□□□□ -0.6
USP48-215ENST00000534705 POTEB3A0JP26 581 aa11.28□□□□□ -0.6
USP48-215ENST00000534705 POTEBQ6S5H4 581 aa11.28□□□□□ -0.6
USP48-215ENST00000534705 KRTAP3-3Q9BYR6 98 aa11.28□□□□□ -0.6
USP48-215ENST00000534705 KRTAP3-2Q9BYR7 98 aa11.28□□□□□ -0.6
USP48-215ENST00000534705 IFNLR1Q8IU57 520 aaPredicted RBP11.27□□□□□ -0.61
USP48-215ENST00000534705 ZNF710Q8N1W2 664 aa11.27□□□□□ -0.61
USP48-215ENST00000534705 DOK7Q18PE1 504 aa11.26□□□□□ -0.61
USP48-215ENST00000534705 HOXB3P14651 431 aaPredicted RBP11.25□□□□□ -0.61
USP48-215ENST00000534705 TRIM41Q8WV44 630 aa11.25□□□□□ -0.61
USP48-215ENST00000534705 HOXB1P14653 301 aaPredicted RBP11.24□□□□□ -0.61
USP48-215ENST00000534705 RIMBP2O15034 1052 aa11.21□□□□□ -0.61
USP48-215ENST00000534705 ERBB3P21860 1342 aa11.19□□□□□ -0.62
USP48-215ENST00000534705 EFCAB3Q8N7B9 438 aa11.17□□□□□ -0.62
USP48-215ENST00000534705 ZSWIM6Q9HCJ5 1215 aa11.14□□□□□ -0.63
USP48-215ENST00000534705 SOX12O15370 315 aa11.12□□□□□ -0.63
USP48-215ENST00000534705 MICALL2Q8IY33 904 aa11.09□□□□□ -0.63
USP48-215ENST00000534705 VARS2Q5ST30 1063 aaKnown RBP11.07□□□□□ -0.64
USP48-215ENST00000534705 RNF166Q96A37 237 aaPredicted RBP11.06□□□□□ -0.64
USP48-215ENST00000534705 RIOK3O14730 519 aaKnown RBP11.05□□□□□ -0.64
USP48-215ENST00000534705 ZNF687Q8N1G0 1237 aa11.05□□□□□ -0.64
USP48-215ENST00000534705 VGFO15240 615 aaPredicted RBP11.02□□□□□ -0.65
USP48-215ENST00000534705 TMEM92Q6UXU6 159 aa11.02□□□□□ -0.65
USP48-215ENST00000534705 PTGER2P43116 358 aa11.01□□□□□ -0.65
USP48-215ENST00000534705 GPR153Q6NV75 609 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms