RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 PRLHP81277 87 aa1.59□□□□□ -2.15
USP48-215ENST00000534705 HMCN1Q96RW7 5635 aa1.59□□□□□ -2.16
USP48-215ENST00000534705 TPRXLQ17RH7 258 aa1.56□□□□□ -2.16
USP48-215ENST00000534705 KRTAP12-4P60329 112 aa1.55□□□□□ -2.16
USP48-215ENST00000534705 FCGBPQ9Y6R7 5405 aaPredicted RBP1.55□□□□□ -2.16
USP48-215ENST00000534705 FLGP20930 4061 aaPredicted RBP1.54□□□□□ -2.16
USP48-215ENST00000534705 KRTAP12-3P60328 96 aa1.53□□□□□ -2.16
USP48-215ENST00000534705 SSBP3-AS1Q7Z2R9 100 aa1.53□□□□□ -2.16
USP48-215ENST00000534705 SPINK1P00995 79 aa1.52□□□□□ -2.17
USP48-215ENST00000534705 RPS29P62273 56 aaKnown RBP1.52□□□□□ -2.17
USP48-215ENST00000534705 H1FX-AS1Q4G0G2 97 aa1.52□□□□□ -2.17
USP48-215ENST00000534705 COX6B2Q6YFQ2 88 aa1.51□□□□□ -2.17
USP48-215ENST00000534705 KRTAP19-2Q3LHN2 52 aa1.5□□□□□ -2.17
USP48-215ENST00000534705 KRTAP6-3Q3LI67 103 aa1.5□□□□□ -2.17
USP48-215ENST00000534705 INE1O15225 51 aa1.48□□□□□ -2.17
USP48-215ENST00000534705 C9orf92A6NGG3 77 aa1.46□□□□□ -2.18
USP48-215ENST00000534705 RPL37P61927 97 aaKnown RBP1.46□□□□□ -2.18
USP48-215ENST00000534705 CRIPTQ9P021 101 aa1.46□□□□□ -2.18
USP48-215ENST00000534705 MT1HP80294 61 aa1.44□□□□□ -2.18
USP48-215ENST00000534705 FSIP2Q5CZC0 6907 aa1.43□□□□□ -2.18
USP48-215ENST00000534705 KRTAP13-4Q3LI77 160 aa1.43□□□□□ -2.18
USP48-215ENST00000534705 C10orf95Q9H7T3 257 aa1.43□□□□□ -2.18
USP48-215ENST00000534705 SSPOA2VEC9 5147 aa1.41□□□□□ -2.18
USP48-215ENST00000534705 USH2AO75445 5202 aa1.4□□□□□ -2.19
USP48-215ENST00000534705 KRTAP12-1P59990 96 aa1.4□□□□□ -2.19
USP48-215ENST00000534705 PLAC4Q8WY50 150 aa1.4□□□□□ -2.19
USP48-215ENST00000534705 S4R3F8 94 aa1.4□□□□□ -2.19
USP48-215ENST00000534705 MT2AP02795 61 aa1.35□□□□□ -2.19
USP48-215ENST00000534705 M0R2T5 61 aa1.34□□□□□ -2.19
USP48-215ENST00000534705 MT1FP04733 61 aa1.34□□□□□ -2.19
USP48-215ENST00000534705 M0QZ58 72 aa1.33□□□□□ -2.2
USP48-215ENST00000534705 MACF1Q9UPN3 7388 aaKnown RBP1.31□□□□□ -2.2
USP48-215ENST00000534705 A0A0D9SG42 100 aa1.31□□□□□ -2.2
USP48-215ENST00000534705 SYNE2Q8WXH0 6885 aaKnown RBP1.3□□□□□ -2.2
USP48-215ENST00000534705 KRTAP19-6Q3LI70 58 aa1.27□□□□□ -2.21
USP48-215ENST00000534705 MT1BP07438 61 aa1.25□□□□□ -2.21
USP48-215ENST00000534705 KRTAP19-8Q3LI54 63 aa1.24□□□□□ -2.21
USP48-215ENST00000534705 SPRR2GQ9BYE4 73 aa1.23□□□□□ -2.21
USP48-215ENST00000534705 MUC12Q9UKN1 5478 aa1.22□□□□□ -2.21
USP48-215ENST00000534705 NEBP20929 6669 aa1.21□□□□□ -2.22
USP48-215ENST00000534705 KMT2DO14686 5537 aa1.2□□□□□ -2.22
USP48-215ENST00000534705 MT1XP80297 61 aa1.16□□□□□ -2.22
USP48-215ENST00000534705 MDN1Q9NU22 5596 aa1.15□□□□□ -2.22
USP48-215ENST00000534705 TNP1P09430 55 aa1.15□□□□□ -2.23
USP48-215ENST00000534705 KRTAP8-1Q8IUC2 63 aa1.13□□□□□ -2.23
USP48-215ENST00000534705 KRTAP2-3P0C7H8 128 aa1.09□□□□□ -2.23
USP48-215ENST00000534705 KRTAP2-4Q9BYR9 128 aa1.09□□□□□ -2.23
USP48-215ENST00000534705 KRTAP2-1Q9BYU5 128 aa1.09□□□□□ -2.23
USP48-215ENST00000534705 SPRR2FQ96RM1 72 aa1.08□□□□□ -2.24
USP48-215ENST00000534705 SPRR2EP22531 72 aa1.07□□□□□ -2.24
USP48-215ENST00000534705 SPRR2BP35325 72 aa1.07□□□□□ -2.24
USP48-215ENST00000534705 SPRR2AP35326 72 aa1.07□□□□□ -2.24
USP48-215ENST00000534705 KRTAP20-1Q3LI63 56 aa1.07□□□□□ -2.24
USP48-215ENST00000534705 DSTQ03001 7570 aaKnown RBP1.06□□□□□ -2.24
USP48-215ENST00000534705 KRTAP19-7Q3SYF9 63 aa1.05□□□□□ -2.24
USP48-215ENST00000534705 SPRR2DP22532 72 aa1.03□□□□□ -2.24
USP48-215ENST00000534705 MT1EP04732 61 aa1.02□□□□□ -2.25
USP48-215ENST00000534705 KRTAP19-5Q3LI72 72 aa1□□□□□ -2.25
USP48-215ENST00000534705 KRTAP19-3Q7Z4W3 81 aa1□□□□□ -2.25
USP48-215ENST00000534705 MT1LQ93083 61 aa0.98□□□□□ -2.25
USP48-215ENST00000534705 MT1GP13640 62 aa0.97□□□□□ -2.25
USP48-215ENST00000534705 MT1MQ8N339 61 aa0.97□□□□□ -2.25
USP48-215ENST00000534705 GPR98Q8WXG9 6306 aa0.97□□□□□ -2.25
USP48-215ENST00000534705 AHNAK2Q8IVF2 5795 aa0.95□□□□□ -2.26
USP48-215ENST00000534705 KRTAP5-10Q6L8G5 202 aa0.94□□□□□ -2.26
USP48-215ENST00000534705 SYNE1Q8NF91 8797 aaKnown RBP0.91□□□□□ -2.26
USP48-215ENST00000534705 MT4P47944 62 aa0.89□□□□□ -2.27
USP48-215ENST00000534705 MT1AP04731 61 aa0.87□□□□□ -2.27
USP48-215ENST00000534705 KRTAP20-2Q3LI61 65 aa0.87□□□□□ -2.27
USP48-215ENST00000534705 MUC16Q8WXI7 14507 aa0.87□□□□□ -2.27
USP48-215ENST00000534705 KRTAP6-1Q3LI64 71 aa0.84□□□□□ -2.27
USP48-215ENST00000534705 PRM1P04553 51 aa0.81□□□□□ -2.28
USP48-215ENST00000534705 AHNAKQ09666 5890 aaKnown RBP0.79□□□□□ -2.28
USP48-215ENST00000534705 KRTAP6-2Q3LI66 62 aa0.78□□□□□ -2.28
USP48-215ENST00000534705 MUC5ACP98088 5654 aa0.77□□□□□ -2.29
USP48-215ENST00000534705 MUC5BQ9HC84 5762 aaPredicted RBP0.76□□□□□ -2.29
USP48-215ENST00000534705 KRTAP21-1Q3LI58 79 aa0.62□□□□□ -2.31
USP48-215ENST00000534705 PHGR1C9JFL3 82 aa0.5□□□□□ -2.33
Retrieved 78 of 20,778 RNA–protein pairs in 13.6 ms