RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 SLBPQ14493 270 aaKnown RBP eCLIP6.02□□□□□ -1.453e-8■■■■■ 73
USP48-215ENST00000534705 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.97□□□□□ -1.299e-7■■■■■ 30.8
USP48-215ENST00000534705 SF3B4Q15427 424 aaKnown RBP eCLIP3.45□□□□□ -1.862e-6■■■■□ 23.6
USP48-215ENST00000534705 KHSRPQ92945 711 aaKnown RBP eCLIP10.81□□□□□ -0.682e-11■■■■□ 23.4
USP48-215ENST00000534705 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.5□□□□□ -0.573e-12■■■■□ 22.4
USP48-215ENST00000534705 SF3B1O75533 1304 aaKnown RBP eCLIP2.96□□□□□ -1.933e-6■■■■□ 20.7
USP48-215ENST00000534705 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.46□□□□□ -2.028e-7■■■□□ 17.1
USP48-215ENST00000534705 RBM22Q9NW64 420 aaKnown RBP eCLIP2.73□□□□□ -1.972e-10■■■□□ 17
USP48-215ENST00000534705 TIA1P31483 386 aaKnown RBP eCLIP2.92□□□□□ -1.943e-8■■■□□ 15.4
USP48-215ENST00000534705 QKIQ96PU8 341 aaKnown RBP eCLIP2.73□□□□□ -1.973e-10■■□□□ 13.7
USP48-215ENST00000534705 AQRO60306 1485 aaKnown RBP eCLIP4.92□□□□□ -1.622e-7■■□□□ 12
USP48-215ENST00000534705 U2AF2P26368 475 aaKnown RBP eCLIP3.38□□□□□ -1.871e-7■□□□□ 11.3
USP48-215ENST00000534705 U2AF1Q01081 240 aaKnown RBP eCLIP4.45□□□□□ -1.71e-7■□□□□ 11.3
USP48-215ENST00000534705 DDX24Q9GZR7 859 aaKnown RBP eCLIP4□□□□□ -1.775e-11■□□□□ 10.5
USP48-215ENST00000534705 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.74■□□□□ 0.119e-9■□□□□ 9.8
USP48-215ENST00000534705 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.45□□□□□ -1.062e-10■□□□□ 9.8
USP48-215ENST00000534705 PPIGQ13427 754 aaKnown RBP eCLIP3.2□□□□□ -1.93e-6■□□□□ 9.8
USP48-215ENST00000534705 ZNF622Q969S3 477 aaKnown RBP eCLIP3.53□□□□□ -1.846e-16■□□□□ 9.6
USP48-215ENST00000534705 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.23□□□□□ -1.893e-19■□□□□ 9.5
USP48-215ENST00000534705 YBX3P16989 372 aaKnown RBP eCLIP7.27□□□□□ -1.255e-9■□□□□ 9.1
USP48-215ENST00000534705 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.57□□□□□ -1.524e-7■□□□□ 9
Retrieved 21 of 21 RNA–protein pairs in 5.9 ms