RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 CFAP43Q8NDM7 1665 aa28.08■■■□□ 2.09
VPS28-213ENST00000530983 FHAD1B1AJZ9 1412 aa28.06■■■□□ 2.08
VPS28-213ENST00000530983 PCF11O94913 1555 aaKnown RBP28.05■■■□□ 2.08
VPS28-213ENST00000530983 MAPKBP1O60336 1514 aa28.05■■■□□ 2.08
VPS28-213ENST00000530983 DNMBPQ6XZF7 1577 aa28.04■■■□□ 2.08
VPS28-213ENST00000530983 PHLDB1Q86UU1 1377 aa28.04■■■□□ 2.08
VPS28-213ENST00000530983 ABCA10Q8WWZ4 1543 aa28■■■□□ 2.07
VPS28-213ENST00000530983 RAD54L2Q9Y4B4 1467 aa27.99■■■□□ 2.07
VPS28-213ENST00000530983 POLA1P09884 1462 aaPredicted RBP27.97■■■□□ 2.07
VPS28-213ENST00000530983 SETD5Q9C0A6 1442 aa27.97■■■□□ 2.07
VPS28-213ENST00000530983 TOPBP1Q92547 1522 aa27.96■■■□□ 2.07
VPS28-213ENST00000530983 P3H3Q8IVL6 736 aa27.93■■■□□ 2.06
VPS28-213ENST00000530983 FHOD3Q2V2M9 1422 aa27.92■■■□□ 2.06
VPS28-213ENST00000530983 EFCAB5A4FU69 1503 aa27.92■■■□□ 2.06
VPS28-213ENST00000530983 CUL7Q14999 1698 aa27.91■■■□□ 2.06
VPS28-213ENST00000530983 FYCO1Q9BQS8 1478 aa27.9■■■□□ 2.06
VPS28-213ENST00000530983 CTTNBP2Q8WZ74 1663 aa27.89■■■□□ 2.06
VPS28-213ENST00000530983 NESP48681 1621 aa27.88■■■□□ 2.05
VPS28-213ENST00000530983 LAMC3Q9Y6N6 1575 aa27.87■■■□□ 2.05
VPS28-213ENST00000530983 FAM50AQ14320 339 aaKnown RBP27.86■■■□□ 2.05
VPS28-213ENST00000530983 CASKIN1Q8WXD9 1431 aa27.85■■■□□ 2.05
VPS28-213ENST00000530983 AQRO60306 1485 aaKnown RBP eCLIP27.84■■■□□ 2.057e-10■■■■□ 24.3
VPS28-213ENST00000530983 ATP1B4Q9UN42 357 aaPredicted RBP27.81■■■□□ 2.04
VPS28-213ENST00000530983 WDR97A6NE52 1622 aa27.8■■■□□ 2.04
VPS28-213ENST00000530983 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.75■■■□□ 2.033e-6■■□□□ 12.6
VPS28-213ENST00000530983 URB2Q14146 1524 aaKnown RBP27.72■■■□□ 2.03
VPS28-213ENST00000530983 SNAPC4Q5SXM2 1469 aa27.72■■■□□ 2.03
VPS28-213ENST00000530983 SIN3AQ96ST3 1273 aa27.72■■■□□ 2.03
VPS28-213ENST00000530983 FMN1Q68DA7 1419 aa27.71■■■□□ 2.03
VPS28-213ENST00000530983 ABCA5Q8WWZ7 1642 aa27.68■■■□□ 2.02
VPS28-213ENST00000530983 SAMD9Q5K651 1589 aa27.66■■■□□ 2.02
VPS28-213ENST00000530983 FGD6Q6ZV73 1430 aa27.66■■■□□ 2.02
VPS28-213ENST00000530983 PDS5BQ9NTI5 1447 aa27.66■■■□□ 2.02
VPS28-213ENST00000530983 LRRIQ1Q96JM4 1722 aa27.65■■■□□ 2.02
VPS28-213ENST00000530983 TIMELESSQ9UNS1 1208 aa27.63■■■□□ 2.01
VPS28-213ENST00000530983 TDRD9Q8NDG6 1382 aaKnown RBP27.59■■■□□ 2.01
VPS28-213ENST00000530983 GAPVD1Q14C86 1478 aa27.57■■■□□ 2
VPS28-213ENST00000530983 SUPT16HQ9Y5B9 1047 aaKnown RBP27.57■■■□□ 2
VPS28-213ENST00000530983 MTUS2Q5JR59 1369 aa27.57■■■□□ 2
VPS28-213ENST00000530983 KCNH8Q96L42 1107 aa27.56■■■□□ 2
VPS28-213ENST00000530983 GRIN2BQ13224 1484 aa27.54■■■□□ 2
VPS28-213ENST00000530983 CCDC18Q5T9S5 1454 aa27.53■■■□□ 2
VPS28-213ENST00000530983 PTPRKQ15262 1439 aa27.53■■■□□ 2
VPS28-213ENST00000530983 PPP1R15AO75807 674 aaPredicted RBP27.52■■■□□ 2
VPS28-213ENST00000530983 THOC2Q8NI27 1593 aaKnown RBP27.51■■■□□ 2
VPS28-213ENST00000530983 HFM1A2PYH4 1435 aa27.51■■□□□ 1.99
VPS28-213ENST00000530983 DDX10Q13206 875 aaKnown RBP27.51■■□□□ 1.99
VPS28-213ENST00000530983 PTPN23Q9H3S7 1636 aa27.5■■□□□ 1.99
VPS28-213ENST00000530983 NCOA2Q15596 1464 aa27.49■■□□□ 1.99
VPS28-213ENST00000530983 KIF21AQ7Z4S6 1674 aa27.49■■□□□ 1.99
VPS28-213ENST00000530983 SUPT6HQ7KZ85 1726 aaKnown RBP27.47■■□□□ 1.99
VPS28-213ENST00000530983 MYOM3Q5VTT5 1437 aa27.47■■□□□ 1.99
VPS28-213ENST00000530983 UACAQ9BZF9 1416 aa27.46■■□□□ 1.99
VPS28-213ENST00000530983 EHBP1L1Q8N3D4 1523 aa27.45■■□□□ 1.98
VPS28-213ENST00000530983 TARBP1Q13395 1621 aaKnown RBP27.42■■□□□ 1.98
VPS28-213ENST00000530983 NAIPQ13075 1403 aa27.41■■□□□ 1.98
VPS28-213ENST00000530983 HIRIP3Q9BW71 556 aaPredicted RBP27.39■■□□□ 1.97
VPS28-213ENST00000530983 ARHGEF11O15085 1522 aa27.39■■□□□ 1.97
VPS28-213ENST00000530983 UGGT2Q9NYU1 1516 aa27.39■■□□□ 1.97
VPS28-213ENST00000530983 TONSLQ96HA7 1378 aa27.38■■□□□ 1.97
VPS28-213ENST00000530983 MAGI3Q5TCQ9 1506 aa27.38■■□□□ 1.97
VPS28-213ENST00000530983 DNAJC5BQ9UF47 199 aa27.36■■□□□ 1.97
VPS28-213ENST00000530983 PBRM1Q86U86 1689 aa27.32■■□□□ 1.96
VPS28-213ENST00000530983 HECW1Q76N89 1606 aa27.28■■□□□ 1.96
VPS28-213ENST00000530983 KDM5BQ9UGL1 1544 aa27.28■■□□□ 1.96
VPS28-213ENST00000530983 TCOF1Q13428 1488 aaKnown RBP27.27■■□□□ 1.96
VPS28-213ENST00000530983 GCC2Q8IWJ2 1684 aa27.26■■□□□ 1.95
VPS28-213ENST00000530983 IQGAP2Q13576 1575 aa27.25■■□□□ 1.95
VPS28-213ENST00000530983 CCER2I3L3R5 266 aa27.25■■□□□ 1.95
VPS28-213ENST00000530983 MRC2Q9UBG0 1479 aa27.22■■□□□ 1.95
VPS28-213ENST00000530983 ADAMTS12P58397 1594 aa27.22■■□□□ 1.95
VPS28-213ENST00000530983 ANP32CO43423 234 aa27.22■■□□□ 1.95
VPS28-213ENST00000530983 EPRSP07814 1512 aaKnown RBP27.21■■□□□ 1.95
VPS28-213ENST00000530983 DENND4BO75064 1496 aaPredicted RBP27.18■■□□□ 1.94
VPS28-213ENST00000530983 RRP7BPQ9NSQ0 103 aa27.17■■□□□ 1.94
VPS28-213ENST00000530983 AKNAQ7Z591 1439 aa27.16■■□□□ 1.94
VPS28-213ENST00000530983 CDK13Q14004 1512 aaKnown RBP27.16■■□□□ 1.94
VPS28-213ENST00000530983 WDR62O43379 1518 aa27.15■■□□□ 1.94
VPS28-213ENST00000530983 KDM6BO15054 1643 aa27.15■■□□□ 1.94
VPS28-213ENST00000530983 CHIC2Q9UKJ5 165 aa27.13■■□□□ 1.93
VPS28-213ENST00000530983 TSHZ2Q9NRE2 1034 aa27.12■■□□□ 1.93
VPS28-213ENST00000530983 MIA2Q96PC5 1412 aa27.11■■□□□ 1.93
VPS28-213ENST00000530983 TRIM52Q96A61 297 aa27.07■■□□□ 1.92
VPS28-213ENST00000530983 FKBP8Q14318 412 aa27.06■■□□□ 1.92
VPS28-213ENST00000530983 IFT140Q96RY7 1462 aa27.06■■□□□ 1.92
VPS28-213ENST00000530983 BCANQ96GW7 911 aa27.02■■□□□ 1.92
VPS28-213ENST00000530983 ARID3CA6NKF2 412 aa27■■□□□ 1.91
VPS28-213ENST00000530983 MPHOSPH9Q99550 1183 aa26.98■■□□□ 1.91
VPS28-213ENST00000530983 KIAA0556O60303 1618 aa26.97■■□□□ 1.91
VPS28-213ENST00000530983 HSPA5P11021 654 aaKnown RBP26.96■■□□□ 1.91
VPS28-213ENST00000530983 ZNF608Q9ULD9 1512 aaPredicted RBP26.96■■□□□ 1.91
VPS28-213ENST00000530983 WASHC2AQ641Q2 1341 aa26.96■■□□□ 1.91
VPS28-213ENST00000530983 DISP1Q96F81 1524 aa26.95■■□□□ 1.91
VPS28-213ENST00000530983 ANP32EQ9BTT0 268 aa26.95■■□□□ 1.91
VPS28-213ENST00000530983 DAPK1P53355 1430 aa26.94■■□□□ 1.9
VPS28-213ENST00000530983 DNMT1P26358 1616 aaKnown RBP26.94■■□□□ 1.9
VPS28-213ENST00000530983 KIAA0586Q9BVV6 1533 aa26.93■■□□□ 1.9
VPS28-213ENST00000530983 ROCK1Q13464 1354 aa26.92■■□□□ 1.9
VPS28-213ENST00000530983 NUP153P49790 1475 aaKnown RBP26.91■■□□□ 1.9
VPS28-213ENST00000530983 NEFLP07196 543 aa26.91■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms