RNA–Protein interactions for RNA: ENST00000530748.5

CTNND1-227, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 5,925 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-227ENST00000530748 EIF4G2P78344 907 aaKnown RBP eCLIP11.27□□□□□ -0.61
CTNND1-227ENST00000530748 RRP7BPQ9NSQ0 103 aa11.26□□□□□ -0.61
CTNND1-227ENST00000530748 SCAF1Q9H7N4 1312 aaKnown RBP11.26□□□□□ -0.61
CTNND1-227ENST00000530748 WRNQ14191 1432 aaPredicted RBP eCLIP11.25□□□□□ -0.61
CTNND1-227ENST00000530748 CEP164Q9UPV0 1460 aa11.24□□□□□ -0.61
CTNND1-227ENST00000530748 PLEKHD1A6NEE1 506 aa11.24□□□□□ -0.61
CTNND1-227ENST00000530748 PPP1R15AO75807 674 aaPredicted RBP11.24□□□□□ -0.61
CTNND1-227ENST00000530748 KIF27Q86VH2 1401 aa11.23□□□□□ -0.61
CTNND1-227ENST00000530748 ZBTB7CA1YPR0 619 aa11.21□□□□□ -0.61
CTNND1-227ENST00000530748 KCNH8Q96L42 1107 aa11.21□□□□□ -0.61
CTNND1-227ENST00000530748 MYO15BQ96JP2 1530 aa11.2□□□□□ -0.62
CTNND1-227ENST00000530748 DDRGK1Q96HY6 314 aa11.19□□□□□ -0.62
CTNND1-227ENST00000530748 CDCA8Q53HL2 280 aa11.19□□□□□ -0.62
CTNND1-227ENST00000530748 TNIKQ9UKE5 1360 aa11.18□□□□□ -0.62
CTNND1-227ENST00000530748 MIER1Q8N108 512 aa11.18□□□□□ -0.62
CTNND1-227ENST00000530748 C14orf37Q86TY3 774 aa11.18□□□□□ -0.62
CTNND1-227ENST00000530748 CFAP53Q96M91 514 aa11.18□□□□□ -0.62
CTNND1-227ENST00000530748 ERCC6Q03468 1493 aa11.18□□□□□ -0.62
CTNND1-227ENST00000530748 NBR1Q14596 966 aa11.17□□□□□ -0.62
CTNND1-227ENST00000530748 HIRIP3Q9BW71 556 aaPredicted RBP11.17□□□□□ -0.62
CTNND1-227ENST00000530748 BAZ1AQ9NRL2 1556 aaPredicted RBP11.16□□□□□ -0.62
CTNND1-227ENST00000530748 BECN1Q14457 450 aa11.16□□□□□ -0.62
CTNND1-227ENST00000530748 IRX6P78412 446 aaPredicted RBP11.16□□□□□ -0.62
CTNND1-227ENST00000530748 CFDP1Q9UEE9 299 aaPredicted RBP11.15□□□□□ -0.62
CTNND1-227ENST00000530748 A0A0G2JS52 829 aa11.14□□□□□ -0.63
CTNND1-227ENST00000530748 EIF5BO60841 1220 aaKnown RBP11.14□□□□□ -0.63
CTNND1-227ENST00000530748 KNSTRNQ9Y448 316 aa11.14□□□□□ -0.63
CTNND1-227ENST00000530748 EIF4G1Q04637 1599 aaKnown RBP11.13□□□□□ -0.63
CTNND1-227ENST00000530748 SENP3Q9H4L4 574 aaPredicted RBP11.13□□□□□ -0.63
CTNND1-227ENST00000530748 RGL3Q3MIN7 710 aa11.12□□□□□ -0.63
CTNND1-227ENST00000530748 ARID4BQ4LE39 1312 aaPredicted RBP11.12□□□□□ -0.63
CTNND1-227ENST00000530748 NCLP19338 710 aaKnown RBP11.12□□□□□ -0.63
CTNND1-227ENST00000530748 CASC1Q6TDU7 716 aa11.12□□□□□ -0.63
CTNND1-227ENST00000530748 CARD11Q9BXL7 1154 aa11.11□□□□□ -0.63
CTNND1-227ENST00000530748 GLIPR1L2Q4G1C9 344 aa11.11□□□□□ -0.63
CTNND1-227ENST00000530748 ARXQ96QS3 562 aa11.1□□□□□ -0.63
CTNND1-227ENST00000530748 FHAD1B1AJZ9 1412 aa11.09□□□□□ -0.63
CTNND1-227ENST00000530748 CDK11BP21127 795 aaKnown RBP11.09□□□□□ -0.63
CTNND1-227ENST00000530748 CCNB3Q8WWL7 1395 aa11.08□□□□□ -0.64
CTNND1-227ENST00000530748 HAP1P54257 671 aaPredicted RBP11.08□□□□□ -0.64
CTNND1-227ENST00000530748 PLEKHG5O94827 1062 aa11.08□□□□□ -0.64
CTNND1-227ENST00000530748 MAPK8IP3Q9UPT6 1336 aa11.07□□□□□ -0.64
CTNND1-227ENST00000530748 FTSJ3Q8IY81 847 aaKnown RBP11.07□□□□□ -0.64
CTNND1-227ENST00000530748 GOLGA6L22H0YM25 854 aa11.07□□□□□ -0.64
CTNND1-227ENST00000530748 ANP32EQ9BTT0 268 aa11.07□□□□□ -0.64
CTNND1-227ENST00000530748 KANK1Q14678 1352 aa11.07□□□□□ -0.64
CTNND1-227ENST00000530748 NUDCQ9Y266 331 aa11.05□□□□□ -0.64
CTNND1-227ENST00000530748 POGKQ9P215 609 aa11.04□□□□□ -0.64
CTNND1-227ENST00000530748 PPM1GO15355 546 aaPredicted RBP11.04□□□□□ -0.64
CTNND1-227ENST00000530748 PNNQ9H307 717 aaKnown RBP11.03□□□□□ -0.64
CTNND1-227ENST00000530748 LAS1LQ9Y4W2 734 aaKnown RBP11.02□□□□□ -0.64
CTNND1-227ENST00000530748 CUX2O14529 1486 aa11.02□□□□□ -0.65
CTNND1-227ENST00000530748 CHMP4BQ9H444 224 aaKnown RBP11.02□□□□□ -0.65
CTNND1-227ENST00000530748 ARHGAP35Q9NRY4 1499 aa11.01□□□□□ -0.65
CTNND1-227ENST00000530748 TRIM44Q96DX7 344 aaPredicted RBP11.01□□□□□ -0.65
CTNND1-227ENST00000530748 CARMIL1Q5VZK9 1371 aa11□□□□□ -0.65
CTNND1-227ENST00000530748 MS4A1P11836 297 aa10.99□□□□□ -0.65
CTNND1-227ENST00000530748 TMF1P82094 1093 aa10.99□□□□□ -0.65
CTNND1-227ENST00000530748 CC2D1BQ5T0F9 858 aaKnown RBP10.99□□□□□ -0.65
CTNND1-227ENST00000530748 ZRSR1Q15695 479 aaKnown RBP10.99□□□□□ -0.65
CTNND1-227ENST00000530748 SUPT16HQ9Y5B9 1047 aaKnown RBP10.99□□□□□ -0.65
CTNND1-227ENST00000530748 SIN3AQ96ST3 1273 aa10.98□□□□□ -0.65
CTNND1-227ENST00000530748 SMARCA2P51531 1590 aa10.98□□□□□ -0.65
CTNND1-227ENST00000530748 PPP4R2Q9NY27 417 aa10.97□□□□□ -0.65
CTNND1-227ENST00000530748 NEUROD2Q15784 382 aa10.97□□□□□ -0.65
CTNND1-227ENST00000530748 HDGFP51858 240 aaKnown RBP10.96□□□□□ -0.65
CTNND1-227ENST00000530748 SETD5Q9C0A6 1442 aa10.96□□□□□ -0.66
CTNND1-227ENST00000530748 CECR2Q9BXF3 1484 aa10.95□□□□□ -0.66
CTNND1-227ENST00000530748 PTMAP06454 111 aaKnown RBP10.94□□□□□ -0.66
CTNND1-227ENST00000530748 TNNT2P45379 298 aaPredicted RBP10.94□□□□□ -0.66
CTNND1-227ENST00000530748 SOGA1O94964 1423 aa10.94□□□□□ -0.66
CTNND1-227ENST00000530748 FRAT1Q92837 279 aaPredicted RBP10.94□□□□□ -0.66
CTNND1-227ENST00000530748 SENP3-EIF4A1A0A087X0R7 540 aa10.94□□□□□ -0.66
CTNND1-227ENST00000530748 DCAF11Q8TEB1 546 aa10.93□□□□□ -0.66
CTNND1-227ENST00000530748 CCDC88BA6NC98 1476 aa10.93□□□□□ -0.66
CTNND1-227ENST00000530748 U2SURPO15042 1029 aaKnown RBP10.93□□□□□ -0.66
CTNND1-227ENST00000530748 OS9Q13438 667 aaPredicted RBP10.93□□□□□ -0.66
CTNND1-227ENST00000530748 CARMIL2Q6F5E8 1435 aa10.93□□□□□ -0.66
CTNND1-227ENST00000530748 LMOD2Q6P5Q4 547 aa10.93□□□□□ -0.66
CTNND1-227ENST00000530748 TIMELESSQ9UNS1 1208 aa10.92□□□□□ -0.66
CTNND1-227ENST00000530748 ABCC8Q09428 1581 aa10.91□□□□□ -0.66
CTNND1-227ENST00000530748 HSP90AB1P08238 724 aaKnown RBP10.91□□□□□ -0.66
CTNND1-227ENST00000530748 VPS8Q8N3P4 1428 aa10.91□□□□□ -0.66
CTNND1-227ENST00000530748 NPHP1O15259 732 aa10.9□□□□□ -0.66
CTNND1-227ENST00000530748 GOLGA6L6A8MZA4 724 aa10.9□□□□□ -0.66
CTNND1-227ENST00000530748 PDS5BQ9NTI5 1447 aa10.89□□□□□ -0.67
CTNND1-227ENST00000530748 MORC1Q86VD1 984 aa10.89□□□□□ -0.67
CTNND1-227ENST00000530748 TOP2AP11388 1531 aaKnown RBP10.89□□□□□ -0.67
CTNND1-227ENST00000530748 RGS3P49796 1198 aa10.89□□□□□ -0.67
CTNND1-227ENST00000530748 SRPK2P78362 688 aaKnown RBP10.89□□□□□ -0.67
CTNND1-227ENST00000530748 TPRNQ4KMQ1 711 aa10.89□□□□□ -0.67
CTNND1-227ENST00000530748 KTN1Q86UP2 1357 aaKnown RBP10.88□□□□□ -0.67
CTNND1-227ENST00000530748 CCER2I3L3R5 266 aa10.88□□□□□ -0.67
CTNND1-227ENST00000530748 MROH2BQ7Z745 1585 aa10.88□□□□□ -0.67
CTNND1-227ENST00000530748 FMN1Q68DA7 1419 aa10.87□□□□□ -0.67
CTNND1-227ENST00000530748 NOP58Q9Y2X3 529 aaKnown RBP10.87□□□□□ -0.67
CTNND1-227ENST00000530748 HSPA5P11021 654 aaKnown RBP10.86□□□□□ -0.67
CTNND1-227ENST00000530748 CFAP44Q96MT7 982 aa10.86□□□□□ -0.67
CTNND1-227ENST00000530748 HDGFL2Q7Z4V5 671 aaPredicted RBP10.86□□□□□ -0.67
CTNND1-227ENST00000530748 EIF3AQ14152 1382 aaKnown RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms