RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.95□□□□□ -0.82
HMGB1P28-201ENST00000507778 RASEFQ8IZ41 740 aa9.94□□□□□ -0.82
HMGB1P28-201ENST00000507778 CHADLQ6NUI6 762 aa9.93□□□□□ -0.82
HMGB1P28-201ENST00000507778 CHGAP10645 457 aaKnown RBP9.91□□□□□ -0.82
HMGB1P28-201ENST00000507778 HAX1O00165 279 aa9.9□□□□□ -0.82
HMGB1P28-201ENST00000507778 HAP1P54257 671 aaPredicted RBP9.9□□□□□ -0.82
HMGB1P28-201ENST00000507778 CHRM1P11229 460 aaPredicted RBP9.89□□□□□ -0.83
HMGB1P28-201ENST00000507778 PRKAR2AP13861 404 aaKnown RBP9.88□□□□□ -0.83
HMGB1P28-201ENST00000507778 RNF25Q96BH1 459 aaPredicted RBP9.88□□□□□ -0.83
HMGB1P28-201ENST00000507778 TAOK2Q9UL54 1235 aa9.88□□□□□ -0.83
HMGB1P28-201ENST00000507778 FARP1Q9Y4F1 1045 aaPredicted RBP9.88□□□□□ -0.83
HMGB1P28-201ENST00000507778 RIOK3O14730 519 aaKnown RBP9.87□□□□□ -0.83
HMGB1P28-201ENST00000507778 PAXIP1Q6ZW49 1069 aaPredicted RBP9.86□□□□□ -0.83
HMGB1P28-201ENST00000507778 HS6ST3Q8IZP7 471 aa9.84□□□□□ -0.83
HMGB1P28-201ENST00000507778 CFAP44Q96MT7 982 aa9.84□□□□□ -0.83
HMGB1P28-201ENST00000507778 PYGBP11216 843 aa9.83□□□□□ -0.84
HMGB1P28-201ENST00000507778 SPRYD3Q8NCJ5 442 aa9.83□□□□□ -0.84
HMGB1P28-201ENST00000507778 TSPYL2Q9H2G4 693 aaPredicted RBP9.82□□□□□ -0.84
HMGB1P28-201ENST00000507778 VGFO15240 615 aaPredicted RBP9.81□□□□□ -0.84
HMGB1P28-201ENST00000507778 SP7Q8TDD2 431 aaPredicted RBP9.78□□□□□ -0.84
HMGB1P28-201ENST00000507778 VSIG10Q8N0Z9 540 aa9.76□□□□□ -0.85
HMGB1P28-201ENST00000507778 DNAJC5Q9H3Z4 198 aa9.76□□□□□ -0.85
HMGB1P28-201ENST00000507778 STK25O00506 426 aa9.75□□□□□ -0.85
HMGB1P28-201ENST00000507778 SGIP1Q9BQI5 828 aa9.75□□□□□ -0.85
HMGB1P28-201ENST00000507778 PAK3O75914 559 aaPredicted RBP9.73□□□□□ -0.85
HMGB1P28-201ENST00000507778 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.72□□□□□ -0.85
HMGB1P28-201ENST00000507778 ZFP91Q96JP5 570 aaPredicted RBP9.72□□□□□ -0.85
HMGB1P28-201ENST00000507778 ZNF467Q7Z7K2 595 aaPredicted RBP9.71□□□□□ -0.86
HMGB1P28-201ENST00000507778 CCDC61Q9Y6R9 512 aa9.71□□□□□ -0.86
HMGB1P28-201ENST00000507778 BCL11BQ9C0K0 894 aaPredicted RBP9.7□□□□□ -0.86
HMGB1P28-201ENST00000507778 STK24Q9Y6E0 443 aa9.7□□□□□ -0.86
HMGB1P28-201ENST00000507778 NKX1-1Q15270 411 aaPredicted RBP9.68□□□□□ -0.86
HMGB1P28-201ENST00000507778 TSHZ2Q9NRE2 1034 aa9.68□□□□□ -0.86
HMGB1P28-201ENST00000507778 C19orf67A6NJJ6 358 aa9.66□□□□□ -0.86
HMGB1P28-201ENST00000507778 EVX2Q03828 476 aa9.65□□□□□ -0.86
HMGB1P28-201ENST00000507778 ZNF579Q8NAF0 562 aaKnown RBP9.65□□□□□ -0.86
HMGB1P28-201ENST00000507778 PCDHB8Q9UN66 801 aa9.65□□□□□ -0.86
HMGB1P28-201ENST00000507778 KDM2AQ9Y2K7 1162 aa9.65□□□□□ -0.86
HMGB1P28-201ENST00000507778 PCDHB13Q9Y5F0 798 aa9.65□□□□□ -0.86
HMGB1P28-201ENST00000507778 PDAP1Q13442 181 aaKnown RBP9.64□□□□□ -0.87
HMGB1P28-201ENST00000507778 GTPBP6O43824 516 aaPredicted RBP9.63□□□□□ -0.87
HMGB1P28-201ENST00000507778 CD44P16070 742 aaKnown RBP9.61□□□□□ -0.87
HMGB1P28-201ENST00000507778 KIF12Q96FN5 646 aa9.61□□□□□ -0.87
HMGB1P28-201ENST00000507778 RYDENQ9NUL5 291 aaKnown RBP9.61□□□□□ -0.87
HMGB1P28-201ENST00000507778 ZRANB1Q9UGI0 708 aa9.61□□□□□ -0.87
HMGB1P28-201ENST00000507778 MAP3K13O43283 966 aa9.6□□□□□ -0.87
HMGB1P28-201ENST00000507778 PSEN1P49768 467 aa9.6□□□□□ -0.87
HMGB1P28-201ENST00000507778 IFNL1Q8IU54 200 aa9.58□□□□□ -0.88
HMGB1P28-201ENST00000507778 BCANQ96GW7 911 aa9.55□□□□□ -0.88
HMGB1P28-201ENST00000507778 PHF12Q96QT6 1004 aa9.53□□□□□ -0.88
HMGB1P28-201ENST00000507778 GABBR2O75899 941 aa9.51□□□□□ -0.89
HMGB1P28-201ENST00000507778 CLCN6P51797 869 aa9.5□□□□□ -0.89
HMGB1P28-201ENST00000507778 CABP2Q9NPB3 220 aa9.47□□□□□ -0.89
HMGB1P28-201ENST00000507778 EFCAB3Q8N7B9 438 aa9.46□□□□□ -0.9
HMGB1P28-201ENST00000507778 MFRPQ9BY79 579 aa9.46□□□□□ -0.9
HMGB1P28-201ENST00000507778 SOX12O15370 315 aa9.45□□□□□ -0.9
HMGB1P28-201ENST00000507778 NLRP6P59044 892 aa9.43□□□□□ -0.9
HMGB1P28-201ENST00000507778 MS4A3Q96HJ5 214 aa9.42□□□□□ -0.9
HMGB1P28-201ENST00000507778 TMEM106CQ9BVX2 250 aa9.41□□□□□ -0.9
HMGB1P28-201ENST00000507778 GOLGA2Q08379 1002 aa9.4□□□□□ -0.9
HMGB1P28-201ENST00000507778 PHF8Q9UPP1 1060 aa9.4□□□□□ -0.9
HMGB1P28-201ENST00000507778 FBXO22Q8NEZ5 403 aa9.39□□□□□ -0.91
HMGB1P28-201ENST00000507778 TRPC6Q9Y210 931 aa9.38□□□□□ -0.91
HMGB1P28-201ENST00000507778 PPP1R37O75864 691 aa9.36□□□□□ -0.91
HMGB1P28-201ENST00000507778 DCBLD2Q96PD2 775 aa9.36□□□□□ -0.91
HMGB1P28-201ENST00000507778 TIE1P35590 1138 aa9.35□□□□□ -0.91
HMGB1P28-201ENST00000507778 MKRN3Q13064 507 aaKnown RBP9.35□□□□□ -0.91
HMGB1P28-201ENST00000507778 CADPS2Q86UW7 1296 aa9.35□□□□□ -0.91
HMGB1P28-201ENST00000507778 NBR1Q14596 966 aa9.34□□□□□ -0.91
HMGB1P28-201ENST00000507778 WDR70Q9NW82 654 aa9.34□□□□□ -0.91
HMGB1P28-201ENST00000507778 TTLL13PA6NNM8 815 aa9.32□□□□□ -0.92
HMGB1P28-201ENST00000507778 GALR2O43603 387 aaPredicted RBP9.31□□□□□ -0.92
HMGB1P28-201ENST00000507778 BMP2KQ9NSY1 1161 aaPredicted RBP9.31□□□□□ -0.92
HMGB1P28-201ENST00000507778 MS4A4AQ96JQ5 239 aa9.3□□□□□ -0.92
HMGB1P28-201ENST00000507778 P3H3Q8IVL6 736 aa9.28□□□□□ -0.92
HMGB1P28-201ENST00000507778 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.26□□□□□ -0.93
HMGB1P28-201ENST00000507778 TRIM35Q9UPQ4 493 aa9.26□□□□□ -0.93
HMGB1P28-201ENST00000507778 PRKCSHP14314 528 aaPredicted RBP9.24□□□□□ -0.93
HMGB1P28-201ENST00000507778 POTEIP0CG38 1075 aa9.23□□□□□ -0.93
HMGB1P28-201ENST00000507778 ILDR1Q86SU0 546 aaPredicted RBP9.23□□□□□ -0.93
HMGB1P28-201ENST00000507778 PDE4AP27815 886 aa9.22□□□□□ -0.93
HMGB1P28-201ENST00000507778 TPRNQ4KMQ1 711 aa9.22□□□□□ -0.93
HMGB1P28-201ENST00000507778 LHX8Q68G74 356 aa9.21□□□□□ -0.94
HMGB1P28-201ENST00000507778 ATN1P54259 1190 aaPredicted RBP9.2□□□□□ -0.94
HMGB1P28-201ENST00000507778 KCNV2Q8TDN2 545 aa9.2□□□□□ -0.94
HMGB1P28-201ENST00000507778 ATMINO43313 823 aaPredicted RBP9.19□□□□□ -0.94
HMGB1P28-201ENST00000507778 NCKAP5LQ9HCH0 1330 aa9.19□□□□□ -0.94
HMGB1P28-201ENST00000507778 E2F4Q16254 413 aa9.18□□□□□ -0.94
HMGB1P28-201ENST00000507778 ASTLQ6HA08 431 aaPredicted RBP9.18□□□□□ -0.94
HMGB1P28-201ENST00000507778 LARP6Q9BRS8 491 aaKnown RBP9.18□□□□□ -0.94
HMGB1P28-201ENST00000507778 DPY19L2Q6NUT2 758 aa9.16□□□□□ -0.94
HMGB1P28-201ENST00000507778 CRISPLD2Q9H0B8 497 aa9.16□□□□□ -0.94
HMGB1P28-201ENST00000507778 IER5LQ5T953 404 aa9.15□□□□□ -0.94
HMGB1P28-201ENST00000507778 OCEL1Q9H607 264 aa9.15□□□□□ -0.94
HMGB1P28-201ENST00000507778 MFSD10Q14728 455 aa9.14□□□□□ -0.95
HMGB1P28-201ENST00000507778 ARHGEF1Q92888 912 aaKnown RBP9.14□□□□□ -0.95
HMGB1P28-201ENST00000507778 DDX27Q96GQ7 796 aaKnown RBP9.14□□□□□ -0.95
HMGB1P28-201ENST00000507778 IRX5P78411 483 aaPredicted RBP9.13□□□□□ -0.95
HMGB1P28-201ENST00000507778 PDCD7Q8N8D1 485 aaKnown RBP9.12□□□□□ -0.95
HMGB1P28-201ENST00000507778 MICALL2Q8IY33 904 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms