RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 KDM2AQ9Y2K7 1162 aa25.53■■□□□ 1.68
COL27A1-207ENST00000494090 TNIKQ9UKE5 1360 aa25.53■■□□□ 1.68
COL27A1-207ENST00000494090 HIRIP3Q9BW71 556 aaPredicted RBP25.51■■□□□ 1.67
COL27A1-207ENST00000494090 WRNQ14191 1432 aaPredicted RBP eCLIP25.5■■□□□ 1.67
COL27A1-207ENST00000494090 RRP7BPQ9NSQ0 103 aa25.46■■□□□ 1.67
COL27A1-207ENST00000494090 CEP164Q9UPV0 1460 aa25.43■■□□□ 1.66
COL27A1-207ENST00000494090 IRX6P78412 446 aaPredicted RBP25.43■■□□□ 1.66
COL27A1-207ENST00000494090 NBR1Q14596 966 aa25.4■■□□□ 1.66
COL27A1-207ENST00000494090 MYH16Q9H6N6 1097 aa25.38■■□□□ 1.65
COL27A1-207ENST00000494090 NACADO15069 1562 aa25.38■■□□□ 1.65
COL27A1-207ENST00000494090 EIF5BO60841 1220 aaKnown RBP25.36■■□□□ 1.65
COL27A1-207ENST00000494090 KIF27Q86VH2 1401 aa25.35■■□□□ 1.65
COL27A1-207ENST00000494090 PLEKHD1A6NEE1 506 aa25.35■■□□□ 1.65
COL27A1-207ENST00000494090 PPP1R15AO75807 674 aaPredicted RBP25.31■■□□□ 1.64
COL27A1-207ENST00000494090 BAZ1BQ9UIG0 1483 aaKnown RBP25.31■■□□□ 1.64
COL27A1-207ENST00000494090 CDCA8Q53HL2 280 aa25.25■■□□□ 1.63
COL27A1-207ENST00000494090 DDRGK1Q96HY6 314 aa25.22■■□□□ 1.63
COL27A1-207ENST00000494090 CFAP53Q96M91 514 aa25.19■■□□□ 1.62
COL27A1-207ENST00000494090 KCNH8Q96L42 1107 aa25.18■■□□□ 1.62
COL27A1-207ENST00000494090 BAZ1AQ9NRL2 1556 aaPredicted RBP25.18■■□□□ 1.62
COL27A1-207ENST00000494090 CFDP1Q9UEE9 299 aaPredicted RBP25.16■■□□□ 1.62
COL27A1-207ENST00000494090 SUPT16HQ9Y5B9 1047 aaKnown RBP25.15■■□□□ 1.62
COL27A1-207ENST00000494090 BECN1Q14457 450 aa25.13■■□□□ 1.61
COL27A1-207ENST00000494090 C14orf37Q86TY3 774 aa25.13■■□□□ 1.61
COL27A1-207ENST00000494090 RGL3Q3MIN7 710 aa25.12■■□□□ 1.61
COL27A1-207ENST00000494090 SIN3AQ96ST3 1273 aa25.11■■□□□ 1.61
COL27A1-207ENST00000494090 CARD11Q9BXL7 1154 aa25.1■■□□□ 1.61
COL27A1-207ENST00000494090 A0A0G2JS52 829 aa25.1■■□□□ 1.61
COL27A1-207ENST00000494090 GLIPR1L2Q4G1C9 344 aa25.1■■□□□ 1.61
COL27A1-207ENST00000494090 CCNB3Q8WWL7 1395 aa25.08■■□□□ 1.61
COL27A1-207ENST00000494090 KNSTRNQ9Y448 316 aa25.08■■□□□ 1.61
COL27A1-207ENST00000494090 CDK11BP21127 795 aaKnown RBP25.07■■□□□ 1.6
COL27A1-207ENST00000494090 ARXQ96QS3 562 aa25.07■■□□□ 1.6
COL27A1-207ENST00000494090 ZBTB7CA1YPR0 619 aa25.06■■□□□ 1.6
COL27A1-207ENST00000494090 ANP32EQ9BTT0 268 aa25.05■■□□□ 1.6
COL27A1-207ENST00000494090 PPP4R2Q9NY27 417 aa25.05■■□□□ 1.6
COL27A1-207ENST00000494090 FHAD1B1AJZ9 1412 aa25.05■■□□□ 1.6
COL27A1-207ENST00000494090 TIMELESSQ9UNS1 1208 aa25.04■■□□□ 1.6
COL27A1-207ENST00000494090 NCLP19338 710 aaKnown RBP25.01■■□□□ 1.59
COL27A1-207ENST00000494090 CECR2Q9BXF3 1484 aa25.01■■□□□ 1.59
COL27A1-207ENST00000494090 ARID4BQ4LE39 1312 aaPredicted RBP25■■□□□ 1.59
COL27A1-207ENST00000494090 HAP1P54257 671 aaPredicted RBP24.99■■□□□ 1.59
COL27A1-207ENST00000494090 SOGA1O94964 1423 aa24.98■■□□□ 1.59
COL27A1-207ENST00000494090 GOLGA6L22H0YM25 854 aa24.95■■□□□ 1.59
COL27A1-207ENST00000494090 NUDCQ9Y266 331 aa24.94■■□□□ 1.58
COL27A1-207ENST00000494090 PPM1GO15355 546 aaPredicted RBP24.93■■□□□ 1.58
COL27A1-207ENST00000494090 CASC1Q6TDU7 716 aa24.92■■□□□ 1.58
COL27A1-207ENST00000494090 SENP3-EIF4A1A0A087X0R7 540 aa24.92■■□□□ 1.58
COL27A1-207ENST00000494090 VPS8Q8N3P4 1428 aa24.9■■□□□ 1.58
COL27A1-207ENST00000494090 CARMIL1Q5VZK9 1371 aa24.9■■□□□ 1.58
COL27A1-207ENST00000494090 MAPK8IP3Q9UPT6 1336 aa24.9■■□□□ 1.58
COL27A1-207ENST00000494090 CCER2I3L3R5 266 aa24.89■■□□□ 1.58
COL27A1-207ENST00000494090 CHMP4BQ9H444 224 aaKnown RBP24.89■■□□□ 1.57
COL27A1-207ENST00000494090 SETD5Q9C0A6 1442 aa24.86■■□□□ 1.57
COL27A1-207ENST00000494090 FTSJ3Q8IY81 847 aaKnown RBP24.86■■□□□ 1.57
COL27A1-207ENST00000494090 POGKQ9P215 609 aa24.85■■□□□ 1.57
COL27A1-207ENST00000494090 PLEKHG5O94827 1062 aa24.85■■□□□ 1.57
COL27A1-207ENST00000494090 TRIM44Q96DX7 344 aaPredicted RBP24.84■■□□□ 1.57
COL27A1-207ENST00000494090 CUX2O14529 1486 aa24.84■■□□□ 1.57
COL27A1-207ENST00000494090 ERCC6Q03468 1493 aa24.82■■□□□ 1.56
COL27A1-207ENST00000494090 SENP3Q9H4L4 574 aaPredicted RBP24.81■■□□□ 1.56
COL27A1-207ENST00000494090 PNNQ9H307 717 aaKnown RBP24.81■■□□□ 1.56
COL27A1-207ENST00000494090 MS4A1P11836 297 aa24.8■■□□□ 1.56
COL27A1-207ENST00000494090 ZRSR1Q15695 479 aaKnown RBP24.79■■□□□ 1.56
COL27A1-207ENST00000494090 NOP58Q9Y2X3 529 aaKnown RBP24.79■■□□□ 1.56
COL27A1-207ENST00000494090 HDGFP51858 240 aaKnown RBP24.77■■□□□ 1.56
COL27A1-207ENST00000494090 NEUROD2Q15784 382 aa24.77■■□□□ 1.56
COL27A1-207ENST00000494090 ARHGAP35Q9NRY4 1499 aa24.76■■□□□ 1.55
COL27A1-207ENST00000494090 CC2D1BQ5T0F9 858 aaKnown RBP24.76■■□□□ 1.55
COL27A1-207ENST00000494090 KANK1Q14678 1352 aa24.76■■□□□ 1.55
COL27A1-207ENST00000494090 CCDC88BA6NC98 1476 aa24.76■■□□□ 1.55
COL27A1-207ENST00000494090 TMF1P82094 1093 aa24.76■■□□□ 1.55
COL27A1-207ENST00000494090 B4GALNT3Q6L9W6 998 aa24.74■■□□□ 1.55
COL27A1-207ENST00000494090 MROH2BQ7Z745 1585 aa24.74■■□□□ 1.55
COL27A1-207ENST00000494090 DCAF11Q8TEB1 546 aa24.73■■□□□ 1.55
COL27A1-207ENST00000494090 RGS3P49796 1198 aa24.73■■□□□ 1.55
COL27A1-207ENST00000494090 HSPA5P11021 654 aaKnown RBP24.71■■□□□ 1.55
COL27A1-207ENST00000494090 FRAT1Q92837 279 aaPredicted RBP24.7■■□□□ 1.54
COL27A1-207ENST00000494090 EIF4G1Q04637 1599 aaKnown RBP24.7■■□□□ 1.54
COL27A1-207ENST00000494090 ABCC8Q09428 1581 aa24.7■■□□□ 1.54
COL27A1-207ENST00000494090 KANK4Q5T7N3 995 aaPredicted RBP24.7■■□□□ 1.54
COL27A1-207ENST00000494090 LAS1LQ9Y4W2 734 aaKnown RBP24.69■■□□□ 1.54
COL27A1-207ENST00000494090 LMOD2Q6P5Q4 547 aa24.66■■□□□ 1.54
COL27A1-207ENST00000494090 ERICH6BQ5W0A0 696 aa24.64■■□□□ 1.54
COL27A1-207ENST00000494090 RAB3GAP2Q9H2M9 1393 aa24.62■■□□□ 1.53
COL27A1-207ENST00000494090 TNNT2P45379 298 aaPredicted RBP24.62■■□□□ 1.53
COL27A1-207ENST00000494090 PTMAP06454 111 aaKnown RBP24.58■■□□□ 1.53
COL27A1-207ENST00000494090 U2SURPO15042 1029 aaKnown RBP24.57■■□□□ 1.52
COL27A1-207ENST00000494090 NPHP1O15259 732 aa24.57■■□□□ 1.52
COL27A1-207ENST00000494090 OS9Q13438 667 aaPredicted RBP24.56■■□□□ 1.52
COL27A1-207ENST00000494090 RBM19Q9Y4C8 960 aaKnown RBP24.56■■□□□ 1.52
COL27A1-207ENST00000494090 PKD2Q13563 968 aa24.55■■□□□ 1.52
COL27A1-207ENST00000494090 SMARCA2P51531 1590 aa24.54■■□□□ 1.52
COL27A1-207ENST00000494090 FMN1Q68DA7 1419 aa24.54■■□□□ 1.52
COL27A1-207ENST00000494090 KTN1Q86UP2 1357 aaKnown RBP24.54■■□□□ 1.52
COL27A1-207ENST00000494090 HSP90AB1P08238 724 aaKnown RBP24.51■■□□□ 1.51
COL27A1-207ENST00000494090 CFAP44Q96MT7 982 aa24.51■■□□□ 1.51
COL27A1-207ENST00000494090 MPHOSPH9Q99550 1183 aa24.51■■□□□ 1.51
COL27A1-207ENST00000494090 FGD1P98174 961 aa24.49■■□□□ 1.51
COL27A1-207ENST00000494090 MORC1Q86VD1 984 aa24.49■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms