RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 CCDC88BA6NC98 1476 aa12.1□□□□□ -0.47
VPS52-219ENST00000493379 SYNJ2O15056 1496 aa12.1□□□□□ -0.47
VPS52-219ENST00000493379 CFTRP13569 1480 aa12.09□□□□□ -0.47
VPS52-219ENST00000493379 ADGRL1O94910 1474 aa12.07□□□□□ -0.48
VPS52-219ENST00000493379 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.06□□□□□ -0.481e-8■□□□□ 11.3
VPS52-219ENST00000493379 KDM6BO15054 1643 aa12.04□□□□□ -0.48
VPS52-219ENST00000493379 SUPT5HO00267 1087 aaKnown RBP12.04□□□□□ -0.48
VPS52-219ENST00000493379 SYNJ1O43426 1573 aa12.01□□□□□ -0.49
VPS52-219ENST00000493379 TOPBP1Q92547 1522 aa11.98□□□□□ -0.49
VPS52-219ENST00000493379 TARBP1Q13395 1621 aaKnown RBP11.97□□□□□ -0.49
VPS52-219ENST00000493379 FAM69CQ0P6D2 419 aa11.97□□□□□ -0.49
VPS52-219ENST00000493379 SNAPC4Q5SXM2 1469 aa11.95□□□□□ -0.5
VPS52-219ENST00000493379 ATF5Q9Y2D1 282 aaPredicted RBP11.95□□□□□ -0.5
VPS52-219ENST00000493379 U3KPZ7 1027 aaPredicted RBP11.95□□□□□ -0.5
VPS52-219ENST00000493379 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.94□□□□□ -0.5
VPS52-219ENST00000493379 HNRNPUL2Q1KMD3 747 aaKnown RBP11.94□□□□□ -0.5
VPS52-219ENST00000493379 TSPOAP1O95153 1857 aa11.93□□□□□ -0.5
VPS52-219ENST00000493379 SAMD1Q6SPF0 538 aaPredicted RBP11.93□□□□□ -0.5
VPS52-219ENST00000493379 CHMP7Q8WUX9 453 aaPredicted RBP11.93□□□□□ -0.5
VPS52-219ENST00000493379 FKBP8Q14318 412 aa11.9□□□□□ -0.5
VPS52-219ENST00000493379 SPATA31D1Q6ZQQ2 1576 aa11.89□□□□□ -0.51
VPS52-219ENST00000493379 ABCC10Q5T3U5 1492 aa11.89□□□□□ -0.51
VPS52-219ENST00000493379 TDRD9Q8NDG6 1382 aaKnown RBP11.88□□□□□ -0.51
VPS52-219ENST00000493379 PRDM2Q13029 1718 aa11.87□□□□□ -0.51
VPS52-219ENST00000493379 DIP2BQ9P265 1576 aa11.86□□□□□ -0.51
VPS52-219ENST00000493379 RAD54L2Q9Y4B4 1467 aa11.84□□□□□ -0.51
VPS52-219ENST00000493379 ABCC8Q09428 1581 aa11.82□□□□□ -0.52
VPS52-219ENST00000493379 DNMBPQ6XZF7 1577 aa11.81□□□□□ -0.52
VPS52-219ENST00000493379 POLA1P09884 1462 aaPredicted RBP11.79□□□□□ -0.52
VPS52-219ENST00000493379 MAGI1Q96QZ7 1491 aaPredicted RBP11.78□□□□□ -0.52
VPS52-219ENST00000493379 CEP170Q5SW79 1584 aa11.77□□□□□ -0.53
VPS52-219ENST00000493379 AMER1Q5JTC6 1135 aaPredicted RBP11.72□□□□□ -0.53
VPS52-219ENST00000493379 RTN4Q9NQC3 1192 aaKnown RBP11.72□□□□□ -0.53
VPS52-219ENST00000493379 MAPKBP1O60336 1514 aa11.71□□□□□ -0.53
VPS52-219ENST00000493379 CERKQ8TCT0 537 aa11.71□□□□□ -0.53
VPS52-219ENST00000493379 SOGA1O94964 1423 aa11.7□□□□□ -0.54
VPS52-219ENST00000493379 CUX1P39880 1505 aa11.7□□□□□ -0.54
VPS52-219ENST00000493379 GRIN2BQ13224 1484 aa11.7□□□□□ -0.54
VPS52-219ENST00000493379 ZNF219Q9P2Y4 722 aaPredicted RBP11.69□□□□□ -0.54
VPS52-219ENST00000493379 COL17A1Q9UMD9 1497 aaPredicted RBP11.69□□□□□ -0.54
VPS52-219ENST00000493379 APLP2Q06481 763 aa11.68□□□□□ -0.54
VPS52-219ENST00000493379 PPRC1Q5VV67 1664 aaKnown RBP11.68□□□□□ -0.54
VPS52-219ENST00000493379 WRNQ14191 1432 aaPredicted RBP eCLIP11.67□□□□□ -0.54
VPS52-219ENST00000493379 TOP2BQ02880 1626 aa11.65□□□□□ -0.54
VPS52-219ENST00000493379 NPM1P06748 294 aaKnown RBP eCLIP11.65□□□□□ -0.54
VPS52-219ENST00000493379 PBRM1Q86U86 1689 aa11.65□□□□□ -0.55
VPS52-219ENST00000493379 SHROOM2Q13796 1616 aa11.64□□□□□ -0.55
VPS52-219ENST00000493379 ADCY10Q96PN6 1610 aa11.63□□□□□ -0.55
VPS52-219ENST00000493379 WDR97A6NE52 1622 aa11.62□□□□□ -0.55
VPS52-219ENST00000493379 FGD5Q6ZNL6 1462 aa11.62□□□□□ -0.55
VPS52-219ENST00000493379 BIVM-ERCC5R4GMW8 1640 aa11.58□□□□□ -0.56
VPS52-219ENST00000493379 ABCA10Q8WWZ4 1543 aa11.58□□□□□ -0.56
VPS52-219ENST00000493379 GRIN2AQ12879 1464 aa11.57□□□□□ -0.56
VPS52-219ENST00000493379 PRG4Q92954 1404 aaPredicted RBP11.57□□□□□ -0.56
VPS52-219ENST00000493379 PCF11O94913 1555 aaKnown RBP11.56□□□□□ -0.56
VPS52-219ENST00000493379 NUP160Q12769 1436 aa11.56□□□□□ -0.56
VPS52-219ENST00000493379 HSPA2P54652 639 aa11.54□□□□□ -0.56
VPS52-219ENST00000493379 KIF21BO75037 1637 aa11.53□□□□□ -0.56
VPS52-219ENST00000493379 PTPRMP28827 1452 aa11.52□□□□□ -0.56
VPS52-219ENST00000493379 RNF39Q9H2S5 420 aa11.48□□□□□ -0.57
VPS52-219ENST00000493379 SPINK5Q9NQ38 1064 aaPredicted RBP11.47□□□□□ -0.57
VPS52-219ENST00000493379 MKRN4PQ13434 485 aaPredicted RBP11.46□□□□□ -0.57
VPS52-219ENST00000493379 ABCA5Q8WWZ7 1642 aa11.46□□□□□ -0.58
VPS52-219ENST00000493379 ADAMTS12P58397 1594 aa11.45□□□□□ -0.58
VPS52-219ENST00000493379 IGF1RP08069 1367 aa11.44□□□□□ -0.58
VPS52-219ENST00000493379 JPH4Q96JJ6 628 aa11.44□□□□□ -0.58
VPS52-219ENST00000493379 GLI2P10070 1586 aa11.44□□□□□ -0.58
VPS52-219ENST00000493379 ADAMTSL3P82987 1691 aa11.43□□□□□ -0.58
VPS52-219ENST00000493379 ERICH3Q5RHP9 1530 aa11.43□□□□□ -0.58
VPS52-219ENST00000493379 SPDYE4A6NLX3 237 aa11.42□□□□□ -0.58
VPS52-219ENST00000493379 KIF27Q86VH2 1401 aa11.42□□□□□ -0.58
VPS52-219ENST00000493379 ASXL2Q76L83 1435 aa11.4□□□□□ -0.58
VPS52-219ENST00000493379 MAP3K4Q9Y6R4 1608 aa11.39□□□□□ -0.59
VPS52-219ENST00000493379 FHAD1B1AJZ9 1412 aa11.39□□□□□ -0.59
VPS52-219ENST00000493379 POLA2Q14181 598 aa11.39□□□□□ -0.59
VPS52-219ENST00000493379 SLC24A1O60721 1099 aa11.38□□□□□ -0.59
VPS52-219ENST00000493379 CAPN15O75808 1086 aa11.37□□□□□ -0.59
VPS52-219ENST00000493379 MADDQ8WXG6 1647 aa11.37□□□□□ -0.59
VPS52-219ENST00000493379 C1QBPQ07021 282 aaKnown RBP11.36□□□□□ -0.59
VPS52-219ENST00000493379 TEX14Q8IWB6 1497 aa11.35□□□□□ -0.59
VPS52-219ENST00000493379 TTBK1Q5TCY1 1321 aaPredicted RBP11.35□□□□□ -0.59
VPS52-219ENST00000493379 PROM2Q8N271 834 aa11.34□□□□□ -0.59
VPS52-219ENST00000493379 FBXO3Q9UK99 471 aa11.34□□□□□ -0.59
VPS52-219ENST00000493379 CUL7Q14999 1698 aa11.33□□□□□ -0.6
VPS52-219ENST00000493379 MED1Q15648 1581 aaPredicted RBP11.33□□□□□ -0.6
VPS52-219ENST00000493379 PLB1Q6P1J6 1458 aa11.33□□□□□ -0.6
VPS52-219ENST00000493379 CARMIL1Q5VZK9 1371 aa11.32□□□□□ -0.6
VPS52-219ENST00000493379 EPRSP07814 1512 aaKnown RBP11.32□□□□□ -0.6
VPS52-219ENST00000493379 RUSC2Q8N2Y8 1516 aa11.31□□□□□ -0.6
VPS52-219ENST00000493379 RIMS1Q86UR5 1692 aaKnown RBP11.31□□□□□ -0.6
VPS52-219ENST00000493379 ABCC2Q92887 1545 aa11.3□□□□□ -0.6
VPS52-219ENST00000493379 BCORL1Q5H9F3 1711 aa11.29□□□□□ -0.6
VPS52-219ENST00000493379 EEA1Q15075 1411 aa11.29□□□□□ -0.6
VPS52-219ENST00000493379 PRXQ9BXM0 1461 aa11.27□□□□□ -0.6
VPS52-219ENST00000493379 POTEDQ86YR6 584 aa11.26□□□□□ -0.61
VPS52-219ENST00000493379 STRCQ7RTU9 1775 aa11.25□□□□□ -0.61
VPS52-219ENST00000493379 RAPGEF2Q9Y4G8 1499 aa11.25□□□□□ -0.61
VPS52-219ENST00000493379 KIAA0586Q9BVV6 1533 aa11.24□□□□□ -0.61
VPS52-219ENST00000493379 ZBTB12Q9Y330 459 aaPredicted RBP11.22□□□□□ -0.61
VPS52-219ENST00000493379 LTBP4Q8N2S1 1624 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms