RNA–Protein interactions for RNA: ENST00000492455.1

HMGB1P30-201, Transcript of high mobility group box 1 pseudogene 30, humanhuman

BASIC

Gene HMGB1P30, Length 606 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P30-201ENST00000492455 MAMSTRQ6ZN01 415 aa10.31□□□□□ -0.76
HMGB1P30-201ENST00000492455 MS4A3Q96HJ5 214 aa10.31□□□□□ -0.76
HMGB1P30-201ENST00000492455 PELP1Q8IZL8 1130 aaKnown RBP10.3□□□□□ -0.76
HMGB1P30-201ENST00000492455 POTEGQ6S5H5 508 aa10.29□□□□□ -0.76
HMGB1P30-201ENST00000492455 ATMINO43313 823 aaPredicted RBP10.27□□□□□ -0.77
HMGB1P30-201ENST00000492455 TSPYL2Q9H2G4 693 aaPredicted RBP10.27□□□□□ -0.77
HMGB1P30-201ENST00000492455 PLEKHG5O94827 1062 aa10.26□□□□□ -0.77
HMGB1P30-201ENST00000492455 SCUBE2Q9NQ36 999 aa10.24□□□□□ -0.77
HMGB1P30-201ENST00000492455 PCDH10Q9P2E7 1040 aa10.24□□□□□ -0.77
HMGB1P30-201ENST00000492455 CCDC61Q9Y6R9 512 aa10.18□□□□□ -0.78
HMGB1P30-201ENST00000492455 ATN1P54259 1190 aaPredicted RBP10.16□□□□□ -0.78
HMGB1P30-201ENST00000492455 KIF12Q96FN5 646 aa10.15□□□□□ -0.78
HMGB1P30-201ENST00000492455 FAM163AQ96GL9 167 aaPredicted RBP10.14□□□□□ -0.79
HMGB1P30-201ENST00000492455 POTEJP0CG39 1038 aa10.13□□□□□ -0.79
HMGB1P30-201ENST00000492455 PROM2Q8N271 834 aa10.13□□□□□ -0.79
HMGB1P30-201ENST00000492455 MIER1Q8N108 512 aa10.12□□□□□ -0.79
HMGB1P30-201ENST00000492455 BMP2KQ9NSY1 1161 aaPredicted RBP10.11□□□□□ -0.79
HMGB1P30-201ENST00000492455 SEC24BO95487 1268 aa10.1□□□□□ -0.79
HMGB1P30-201ENST00000492455 TIE1P35590 1138 aa10.1□□□□□ -0.79
HMGB1P30-201ENST00000492455 MAP3K13O43283 966 aa10.08□□□□□ -0.8
HMGB1P30-201ENST00000492455 PLCD3Q8N3E9 789 aa10.04□□□□□ -0.8
HMGB1P30-201ENST00000492455 RASEFQ8IZ41 740 aa10.03□□□□□ -0.8
HMGB1P30-201ENST00000492455 ZBTB47Q9UFB7 747 aaPredicted RBP10.02□□□□□ -0.81
HMGB1P30-201ENST00000492455 TRPC6Q9Y210 931 aa10.02□□□□□ -0.81
HMGB1P30-201ENST00000492455 TTLL13PA6NNM8 815 aa10.01□□□□□ -0.81
HMGB1P30-201ENST00000492455 LCE2DQ5TA82 110 aaPredicted RBP10□□□□□ -0.81
HMGB1P30-201ENST00000492455 POTEFA5A3E0 1075 aa9.99□□□□□ -0.81
HMGB1P30-201ENST00000492455 IER5LQ5T953 404 aa9.99□□□□□ -0.81
HMGB1P30-201ENST00000492455 SGIP1Q9BQI5 828 aa9.99□□□□□ -0.81
HMGB1P30-201ENST00000492455 PCDHB13Q9Y5F0 798 aa9.99□□□□□ -0.81
HMGB1P30-201ENST00000492455 TRIM35Q9UPQ4 493 aa9.97□□□□□ -0.81
HMGB1P30-201ENST00000492455 COLQQ9Y215 455 aaPredicted RBP9.96□□□□□ -0.82
HMGB1P30-201ENST00000492455 FAM212AQ96EL1 285 aa9.92□□□□□ -0.82
HMGB1P30-201ENST00000492455 PLCG2P16885 1265 aa9.91□□□□□ -0.82
HMGB1P30-201ENST00000492455 SLAIN1Q8ND83 568 aa9.91□□□□□ -0.82
HMGB1P30-201ENST00000492455 CDAN1Q8IWY9 1227 aa9.9□□□□□ -0.82
HMGB1P30-201ENST00000492455 TMEM106CQ9BVX2 250 aa9.89□□□□□ -0.83
HMGB1P30-201ENST00000492455 IFNL1Q8IU54 200 aa9.87□□□□□ -0.83
HMGB1P30-201ENST00000492455 NUBP1P53384 320 aa9.86□□□□□ -0.83
HMGB1P30-201ENST00000492455 ST18O60284 1047 aa9.82□□□□□ -0.84
HMGB1P30-201ENST00000492455 SNPHO15079 494 aa9.79□□□□□ -0.84
HMGB1P30-201ENST00000492455 OCEL1Q9H607 264 aa9.78□□□□□ -0.84
HMGB1P30-201ENST00000492455 IRX5P78411 483 aaPredicted RBP9.77□□□□□ -0.85
HMGB1P30-201ENST00000492455 DCAF8Q5TAQ9 597 aa9.77□□□□□ -0.85
HMGB1P30-201ENST00000492455 TMEM121BQ9BXQ6 578 aaPredicted RBP9.77□□□□□ -0.85
HMGB1P30-201ENST00000492455 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.77□□□□□ -0.85
HMGB1P30-201ENST00000492455 PYGBP11216 843 aa9.73□□□□□ -0.85
HMGB1P30-201ENST00000492455 GOLGA2Q08379 1002 aa9.7□□□□□ -0.86
HMGB1P30-201ENST00000492455 FKBP8Q14318 412 aa9.69□□□□□ -0.86
HMGB1P30-201ENST00000492455 C3orf67Q6ZVT6 689 aa9.68□□□□□ -0.86
HMGB1P30-201ENST00000492455 FBXO3Q9UK99 471 aa9.67□□□□□ -0.86
HMGB1P30-201ENST00000492455 PCDHB8Q9UN66 801 aa9.67□□□□□ -0.86
HMGB1P30-201ENST00000492455 MMRN1Q13201 1228 aa9.66□□□□□ -0.86
HMGB1P30-201ENST00000492455 MKRN3Q13064 507 aaKnown RBP9.65□□□□□ -0.86
HMGB1P30-201ENST00000492455 SPNS2Q8IVW8 549 aa9.65□□□□□ -0.86
HMGB1P30-201ENST00000492455 MARVELD3Q96A59 401 aa9.64□□□□□ -0.87
HMGB1P30-201ENST00000492455 ZNF467Q7Z7K2 595 aaPredicted RBP9.63□□□□□ -0.87
HMGB1P30-201ENST00000492455 L3MBTL3Q96JM7 780 aaPredicted RBP9.63□□□□□ -0.87
HMGB1P30-201ENST00000492455 GSE1Q14687 1217 aa9.62□□□□□ -0.87
HMGB1P30-201ENST00000492455 EMP3P54852 163 aa9.61□□□□□ -0.87
HMGB1P30-201ENST00000492455 KLHL34Q8N239 644 aa9.61□□□□□ -0.87
HMGB1P30-201ENST00000492455 PDCD7Q8N8D1 485 aaKnown RBP9.56□□□□□ -0.88
HMGB1P30-201ENST00000492455 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.56□□□□□ -0.88
HMGB1P30-201ENST00000492455 G3V3G9 751 aa9.55□□□□□ -0.88
HMGB1P30-201ENST00000492455 PSEN1P49768 467 aa9.52□□□□□ -0.89
HMGB1P30-201ENST00000492455 FAM205CA6NFA0 338 aa9.5□□□□□ -0.89
HMGB1P30-201ENST00000492455 CHRM1P11229 460 aaPredicted RBP9.5□□□□□ -0.89
HMGB1P30-201ENST00000492455 HS3ST6Q96QI5 342 aa9.5□□□□□ -0.89
HMGB1P30-201ENST00000492455 VASPP50552 380 aaPredicted RBP9.48□□□□□ -0.89
HMGB1P30-201ENST00000492455 PDAP1Q13442 181 aaKnown RBP9.46□□□□□ -0.9
HMGB1P30-201ENST00000492455 ZNF710Q8N1W2 664 aa9.44□□□□□ -0.9
HMGB1P30-201ENST00000492455 BOLA1Q9Y3E2 137 aa9.43□□□□□ -0.9
HMGB1P30-201ENST00000492455 KRTAP3-3Q9BYR6 98 aa9.42□□□□□ -0.9
HMGB1P30-201ENST00000492455 KRTAP3-2Q9BYR7 98 aa9.42□□□□□ -0.9
HMGB1P30-201ENST00000492455 CABP2Q9NPB3 220 aa9.41□□□□□ -0.9
HMGB1P30-201ENST00000492455 DOK7Q18PE1 504 aa9.39□□□□□ -0.91
HMGB1P30-201ENST00000492455 CIZ1Q9ULV3 898 aaPredicted RBP9.39□□□□□ -0.91
HMGB1P30-201ENST00000492455 POTEB3A0JP26 581 aa9.38□□□□□ -0.91
HMGB1P30-201ENST00000492455 RIMBP2O15034 1052 aa9.38□□□□□ -0.91
HMGB1P30-201ENST00000492455 DPY19L2Q6NUT2 758 aa9.38□□□□□ -0.91
HMGB1P30-201ENST00000492455 POTEBQ6S5H4 581 aa9.38□□□□□ -0.91
HMGB1P30-201ENST00000492455 ILDR1Q86SU0 546 aaPredicted RBP9.38□□□□□ -0.91
HMGB1P30-201ENST00000492455 ERBB3P21860 1342 aa9.36□□□□□ -0.91
HMGB1P30-201ENST00000492455 SPOCK2Q92563 424 aa9.35□□□□□ -0.91
HMGB1P30-201ENST00000492455 HOXB1P14653 301 aaPredicted RBP9.34□□□□□ -0.91
HMGB1P30-201ENST00000492455 HOXB3P14651 431 aaPredicted RBP9.33□□□□□ -0.92
HMGB1P30-201ENST00000492455 RNF166Q96A37 237 aaPredicted RBP9.3□□□□□ -0.92
HMGB1P30-201ENST00000492455 VARS2Q5ST30 1063 aaKnown RBP9.27□□□□□ -0.93
HMGB1P30-201ENST00000492455 TRIM41Q8WV44 630 aa9.26□□□□□ -0.93
HMGB1P30-201ENST00000492455 ZSWIM6Q9HCJ5 1215 aa9.25□□□□□ -0.93
HMGB1P30-201ENST00000492455 MYT1LQ9UL68 1186 aa9.24□□□□□ -0.93
HMGB1P30-201ENST00000492455 EFCAB3Q8N7B9 438 aa9.23□□□□□ -0.93
HMGB1P30-201ENST00000492455 IFNLR1Q8IU57 520 aaPredicted RBP9.22□□□□□ -0.93
HMGB1P30-201ENST00000492455 PTGER2P43116 358 aa9.21□□□□□ -0.94
HMGB1P30-201ENST00000492455 MICALL2Q8IY33 904 aa9.19□□□□□ -0.94
HMGB1P30-201ENST00000492455 ZNF687Q8N1G0 1237 aa9.19□□□□□ -0.94
HMGB1P30-201ENST00000492455 SOX12O15370 315 aa9.16□□□□□ -0.94
HMGB1P30-201ENST00000492455 GPR153Q6NV75 609 aa9.12□□□□□ -0.95
HMGB1P30-201ENST00000492455 ANKRD13DQ6ZTN6 518 aa9.12□□□□□ -0.95
HMGB1P30-201ENST00000492455 RIOK3O14730 519 aaKnown RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms