RNA–Protein interactions for RNA: ENST00000492455.1

HMGB1P30-201, Transcript of high mobility group box 1 pseudogene 30, humanhuman

BASIC

Gene HMGB1P30, Length 606 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P30-201ENST00000492455 AEBP2Q6ZN18 517 aaPredicted RBP21.11■□□□□ 0.97
HMGB1P30-201ENST00000492455 CHIC1Q5VXU3 224 aa19.92■□□□□ 0.78
HMGB1P30-201ENST00000492455 SENP3Q9H4L4 574 aaPredicted RBP18.21■□□□□ 0.51
HMGB1P30-201ENST00000492455 PHF23Q9BUL5 403 aaPredicted RBP17.87■□□□□ 0.45
HMGB1P30-201ENST00000492455 FOXD1Q16676 465 aa16.91■□□□□ 0.3
HMGB1P30-201ENST00000492455 POTEDQ86YR6 584 aa16.1■□□□□ 0.17
HMGB1P30-201ENST00000492455 MSH5O43196 834 aa16.07■□□□□ 0.16
HMGB1P30-201ENST00000492455 PIAS4Q8N2W9 510 aaPredicted RBP15.82■□□□□ 0.12
HMGB1P30-201ENST00000492455 PLPPR3Q6T4P5 718 aa15.79■□□□□ 0.12
HMGB1P30-201ENST00000492455 PPP6R1Q9UPN7 881 aa15.52■□□□□ 0.08
HMGB1P30-201ENST00000492455 ADRA2BP18089 450 aa15.51■□□□□ 0.07
HMGB1P30-201ENST00000492455 SCAF1Q9H7N4 1312 aaKnown RBP14.36□□□□□ -0.11
HMGB1P30-201ENST00000492455 DMRT2Q9Y5R5 561 aa14.35□□□□□ -0.11
HMGB1P30-201ENST00000492455 MAPK8IP2Q13387 824 aaPredicted RBP14.31□□□□□ -0.12
HMGB1P30-201ENST00000492455 CACNB1Q02641 598 aaPredicted RBP13.98□□□□□ -0.17
HMGB1P30-201ENST00000492455 DCAF8L1A6NGE4 600 aa13.89□□□□□ -0.19
HMGB1P30-201ENST00000492455 PPP4R3CPQ6ZMV5 832 aa13.75□□□□□ -0.21
HMGB1P30-201ENST00000492455 HOXD11P31277 338 aaPredicted RBP13.68□□□□□ -0.22
HMGB1P30-201ENST00000492455 CNKSR2Q8WXI2 1034 aa13.6□□□□□ -0.23
HMGB1P30-201ENST00000492455 RNF39Q9H2S5 420 aa13.6□□□□□ -0.23
HMGB1P30-201ENST00000492455 RNF216Q9NWF9 866 aaPredicted RBP13.54□□□□□ -0.24
HMGB1P30-201ENST00000492455 C1QBPQ07021 282 aaKnown RBP13.45□□□□□ -0.26
HMGB1P30-201ENST00000492455 DNAJC5BQ9UF47 199 aa13.31□□□□□ -0.28
HMGB1P30-201ENST00000492455 NCBP3Q53F19 620 aaKnown RBP13.25□□□□□ -0.29
HMGB1P30-201ENST00000492455 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.15□□□□□ -0.3
HMGB1P30-201ENST00000492455 NPM3O75607 178 aaKnown RBP12.91□□□□□ -0.34
HMGB1P30-201ENST00000492455 CAPN15O75808 1086 aa12.73□□□□□ -0.37
HMGB1P30-201ENST00000492455 U3KPZ7 1027 aaPredicted RBP12.72□□□□□ -0.37
HMGB1P30-201ENST00000492455 DSG3P32926 999 aa12.63□□□□□ -0.39
HMGB1P30-201ENST00000492455 SPINK5Q9NQ38 1064 aaPredicted RBP12.62□□□□□ -0.39
HMGB1P30-201ENST00000492455 POTEHQ6S545 545 aa12.6□□□□□ -0.39
HMGB1P30-201ENST00000492455 APLP2Q06481 763 aa12.54□□□□□ -0.4
HMGB1P30-201ENST00000492455 TRHP20396 242 aaPredicted RBP12.43□□□□□ -0.42
HMGB1P30-201ENST00000492455 ZNF219Q9P2Y4 722 aaPredicted RBP12.43□□□□□ -0.42
HMGB1P30-201ENST00000492455 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.42□□□□□ -0.42
HMGB1P30-201ENST00000492455 HNRNPUL2Q1KMD3 747 aaKnown RBP12.42□□□□□ -0.42
HMGB1P30-201ENST00000492455 KCNA4P22459 653 aa12.38□□□□□ -0.43
HMGB1P30-201ENST00000492455 ABCB7O75027 752 aa12.36□□□□□ -0.43
HMGB1P30-201ENST00000492455 SLC4A2P04920 1241 aa12.36□□□□□ -0.43
HMGB1P30-201ENST00000492455 SAMD1Q6SPF0 538 aaPredicted RBP12.3□□□□□ -0.44
HMGB1P30-201ENST00000492455 RBM42Q9BTD8 480 aaKnown RBP12.18□□□□□ -0.46
HMGB1P30-201ENST00000492455 MYCNP04198 464 aaPredicted RBP12.03□□□□□ -0.48
HMGB1P30-201ENST00000492455 POLA2Q14181 598 aa12□□□□□ -0.49
HMGB1P30-201ENST00000492455 CHRDL2Q6WN34 429 aa11.97□□□□□ -0.49
HMGB1P30-201ENST00000492455 ZBTB12Q9Y330 459 aaPredicted RBP11.84□□□□□ -0.51
HMGB1P30-201ENST00000492455 AKT1S1Q96B36 256 aa11.79□□□□□ -0.52
HMGB1P30-201ENST00000492455 FOXD4L1Q9NU39 408 aa11.73□□□□□ -0.53
HMGB1P30-201ENST00000492455 SLC4A1APQ9BWU0 796 aaKnown RBP11.71□□□□□ -0.53
HMGB1P30-201ENST00000492455 SP7Q8TDD2 431 aaPredicted RBP11.68□□□□□ -0.54
HMGB1P30-201ENST00000492455 ATF5Q9Y2D1 282 aaPredicted RBP11.64□□□□□ -0.55
HMGB1P30-201ENST00000492455 REM2Q8IYK8 340 aaPredicted RBP11.63□□□□□ -0.55
HMGB1P30-201ENST00000492455 OSCARQ8IYS5 282 aa11.62□□□□□ -0.55
HMGB1P30-201ENST00000492455 PIP4P2Q8N4L2 257 aa11.59□□□□□ -0.55
HMGB1P30-201ENST00000492455 HAX1O00165 279 aa11.53□□□□□ -0.56
HMGB1P30-201ENST00000492455 PITPNM1O00562 1244 aa11.51□□□□□ -0.57
HMGB1P30-201ENST00000492455 FXR2P51116 673 aaKnown RBP eCLIP11.45□□□□□ -0.58
HMGB1P30-201ENST00000492455 ATXN8OSP0DMR3 200 aa11.41□□□□□ -0.58
HMGB1P30-201ENST00000492455 FBLN2P98095 1184 aa11.41□□□□□ -0.58
HMGB1P30-201ENST00000492455 SPDYE2BA6NHP3 402 aa11.38□□□□□ -0.59
HMGB1P30-201ENST00000492455 SPDYE6P0CI01 402 aa11.38□□□□□ -0.59
HMGB1P30-201ENST00000492455 SPDYE2Q495Y8 402 aa11.38□□□□□ -0.59
HMGB1P30-201ENST00000492455 ZBTB22O15209 634 aa11.32□□□□□ -0.6
HMGB1P30-201ENST00000492455 SPDYE1Q8NFV5 336 aaPredicted RBP11.28□□□□□ -0.6
HMGB1P30-201ENST00000492455 CLEC11AQ9Y240 323 aa11.28□□□□□ -0.6
HMGB1P30-201ENST00000492455 PRKAR2AP13861 404 aaKnown RBP11.24□□□□□ -0.61
HMGB1P30-201ENST00000492455 EVX2Q03828 476 aa11.2□□□□□ -0.62
HMGB1P30-201ENST00000492455 ZNF692Q9BU19 519 aaPredicted RBP11.2□□□□□ -0.62
HMGB1P30-201ENST00000492455 SSUH2Q9Y2M2 353 aa11.13□□□□□ -0.63
HMGB1P30-201ENST00000492455 C19orf67A6NJJ6 358 aa11.11□□□□□ -0.63
HMGB1P30-201ENST00000492455 MKRN4PQ13434 485 aaPredicted RBP11.1□□□□□ -0.63
HMGB1P30-201ENST00000492455 PRR29P0C7W0 189 aa11.05□□□□□ -0.64
HMGB1P30-201ENST00000492455 GABBR2O75899 941 aa11.02□□□□□ -0.65
HMGB1P30-201ENST00000492455 CHADLQ6NUI6 762 aa11.01□□□□□ -0.65
HMGB1P30-201ENST00000492455 PABPN1Q86U42 306 aaKnown RBP eCLIP11□□□□□ -0.65
HMGB1P30-201ENST00000492455 LHX8Q68G74 356 aa10.95□□□□□ -0.66
HMGB1P30-201ENST00000492455 CD44P16070 742 aaKnown RBP10.89□□□□□ -0.67
HMGB1P30-201ENST00000492455 CLCN6P51797 869 aa10.86□□□□□ -0.67
HMGB1P30-201ENST00000492455 FARP1Q9Y4F1 1045 aaPredicted RBP10.85□□□□□ -0.67
HMGB1P30-201ENST00000492455 DCBLD2Q96PD2 775 aa10.77□□□□□ -0.69
HMGB1P30-201ENST00000492455 STAG3Q9UJ98 1225 aa10.71□□□□□ -0.69
HMGB1P30-201ENST00000492455 POTEIP0CG38 1075 aa10.7□□□□□ -0.7
HMGB1P30-201ENST00000492455 ZRANB1Q9UGI0 708 aa10.69□□□□□ -0.7
HMGB1P30-201ENST00000492455 ZNF579Q8NAF0 562 aaKnown RBP10.67□□□□□ -0.7
HMGB1P30-201ENST00000492455 PAK3O75914 559 aaPredicted RBP10.64□□□□□ -0.71
HMGB1P30-201ENST00000492455 CREBZFQ9NS37 354 aa10.6□□□□□ -0.71
HMGB1P30-201ENST00000492455 PLSCR2Q9NRY7 297 aa10.56□□□□□ -0.72
HMGB1P30-201ENST00000492455 CSRNP3Q8WYN3 585 aa10.55□□□□□ -0.72
HMGB1P30-201ENST00000492455 SPDYE4A6NLX3 237 aa10.54□□□□□ -0.72
HMGB1P30-201ENST00000492455 NPM1P06748 294 aaKnown RBP eCLIP10.54□□□□□ -0.72
HMGB1P30-201ENST00000492455 GALR2O43603 387 aaPredicted RBP10.53□□□□□ -0.72
HMGB1P30-201ENST00000492455 PHF12Q96QT6 1004 aa10.46□□□□□ -0.73
HMGB1P30-201ENST00000492455 OTUD5Q96G74 571 aa10.42□□□□□ -0.74
HMGB1P30-201ENST00000492455 EHMT2Q96KQ7 1210 aa10.35□□□□□ -0.75
HMGB1P30-201ENST00000492455 POTEB2H3BUK9 544 aa10.34□□□□□ -0.75
HMGB1P30-201ENST00000492455 METRNQ9UJH8 293 aa10.34□□□□□ -0.75
HMGB1P30-201ENST00000492455 POTEMA6NI47 508 aa10.33□□□□□ -0.76
HMGB1P30-201ENST00000492455 MNX1P50219 401 aaPredicted RBP10.33□□□□□ -0.76
HMGB1P30-201ENST00000492455 SLC39A7Q92504 469 aa10.33□□□□□ -0.76
HMGB1P30-201ENST00000492455 C7P10643 843 aa10.32□□□□□ -0.76
HMGB1P30-201ENST00000492455 ASTLQ6HA08 431 aaPredicted RBP10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms