RNA–Protein interactions for RNA: ENST00000488087.1

ECHDC1-217, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 3

Gene ECHDC1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-217ENST00000488087 PKD2Q13563 968 aa10.2□□□□□ -0.78
ECHDC1-217ENST00000488087 NPM1P06748 294 aaKnown RBP eCLIP10.19□□□□□ -0.78
ECHDC1-217ENST00000488087 MNX1P50219 401 aaPredicted RBP10.19□□□□□ -0.78
ECHDC1-217ENST00000488087 ZNF579Q8NAF0 562 aaKnown RBP10.17□□□□□ -0.78
ECHDC1-217ENST00000488087 NUBP1P53384 320 aa10.16□□□□□ -0.78
ECHDC1-217ENST00000488087 ZRANB1Q9UGI0 708 aa10.16□□□□□ -0.78
ECHDC1-217ENST00000488087 ECM2O94769 699 aaPredicted RBP10.15□□□□□ -0.78
ECHDC1-217ENST00000488087 DCAF8L2P0C7V8 631 aa10.15□□□□□ -0.78
ECHDC1-217ENST00000488087 DCAF8Q5TAQ9 597 aa10.15□□□□□ -0.78
ECHDC1-217ENST00000488087 GSE1Q14687 1217 aa10.14□□□□□ -0.79
ECHDC1-217ENST00000488087 FAM212AQ96EL1 285 aa10.13□□□□□ -0.79
ECHDC1-217ENST00000488087 RASEFQ8IZ41 740 aa10.1□□□□□ -0.79
ECHDC1-217ENST00000488087 OTUD5Q96G74 571 aa10.1□□□□□ -0.79
ECHDC1-217ENST00000488087 POTEMA6NI47 508 aa10.08□□□□□ -0.8
ECHDC1-217ENST00000488087 TRIM41Q8WV44 630 aa10.07□□□□□ -0.8
ECHDC1-217ENST00000488087 GALR2O43603 387 aaPredicted RBP10.06□□□□□ -0.8
ECHDC1-217ENST00000488087 TSPYL2Q9H2G4 693 aaPredicted RBP10.04□□□□□ -0.8
ECHDC1-217ENST00000488087 PAK3O75914 559 aaPredicted RBP10.03□□□□□ -0.8
ECHDC1-217ENST00000488087 POTEGQ6S5H5 508 aa10.03□□□□□ -0.8
ECHDC1-217ENST00000488087 RGL2O15211 777 aa10.02□□□□□ -0.81
ECHDC1-217ENST00000488087 POTEB2H3BUK9 544 aa10.01□□□□□ -0.81
ECHDC1-217ENST00000488087 PCDH10Q9P2E7 1040 aa10□□□□□ -0.81
ECHDC1-217ENST00000488087 PYGBP11216 843 aa9.97□□□□□ -0.81
ECHDC1-217ENST00000488087 PHF12Q96QT6 1004 aa9.93□□□□□ -0.82
ECHDC1-217ENST00000488087 CHRM1P11229 460 aaPredicted RBP9.92□□□□□ -0.82
ECHDC1-217ENST00000488087 RIOK3O14730 519 aaKnown RBP9.91□□□□□ -0.82
ECHDC1-217ENST00000488087 RNF25Q96BH1 459 aaPredicted RBP9.91□□□□□ -0.82
ECHDC1-217ENST00000488087 TAOK2Q9UL54 1235 aa9.9□□□□□ -0.82
ECHDC1-217ENST00000488087 CCDC61Q9Y6R9 512 aa9.9□□□□□ -0.82
ECHDC1-217ENST00000488087 PELP1Q8IZL8 1130 aaKnown RBP9.89□□□□□ -0.83
ECHDC1-217ENST00000488087 CHGAP10645 457 aaKnown RBP9.88□□□□□ -0.83
ECHDC1-217ENST00000488087 MAMSTRQ6ZN01 415 aa9.88□□□□□ -0.83
ECHDC1-217ENST00000488087 SLC39A7Q92504 469 aa9.87□□□□□ -0.83
ECHDC1-217ENST00000488087 METRNQ9UJH8 293 aa9.87□□□□□ -0.83
ECHDC1-217ENST00000488087 C7P10643 843 aa9.86□□□□□ -0.83
ECHDC1-217ENST00000488087 VGFO15240 615 aaPredicted RBP9.85□□□□□ -0.83
ECHDC1-217ENST00000488087 ZNF467Q7Z7K2 595 aaPredicted RBP9.84□□□□□ -0.83
ECHDC1-217ENST00000488087 ASTLQ6HA08 431 aaPredicted RBP9.83□□□□□ -0.84
ECHDC1-217ENST00000488087 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.82□□□□□ -0.84
ECHDC1-217ENST00000488087 PCDHB13Q9Y5F0 798 aa9.82□□□□□ -0.84
ECHDC1-217ENST00000488087 BBXQ8WY36 941 aaPredicted RBP9.81□□□□□ -0.84
ECHDC1-217ENST00000488087 STK25O00506 426 aa9.8□□□□□ -0.84
ECHDC1-217ENST00000488087 MAP3K13O43283 966 aa9.8□□□□□ -0.84
ECHDC1-217ENST00000488087 ATMINO43313 823 aaPredicted RBP9.8□□□□□ -0.84
ECHDC1-217ENST00000488087 SLC24A1O60721 1099 aa9.8□□□□□ -0.84
ECHDC1-217ENST00000488087 KIF12Q96FN5 646 aa9.8□□□□□ -0.84
ECHDC1-217ENST00000488087 FAM163AQ96GL9 167 aaPredicted RBP9.8□□□□□ -0.84
ECHDC1-217ENST00000488087 SCUBE2Q9NQ36 999 aa9.8□□□□□ -0.84
ECHDC1-217ENST00000488087 PCDHB8Q9UN66 801 aa9.8□□□□□ -0.84
ECHDC1-217ENST00000488087 HS6ST3Q8IZP7 471 aa9.79□□□□□ -0.84
ECHDC1-217ENST00000488087 MS4A3Q96HJ5 214 aa9.79□□□□□ -0.84
ECHDC1-217ENST00000488087 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.78□□□□□ -0.84
ECHDC1-217ENST00000488087 ZFP91Q96JP5 570 aaPredicted RBP9.78□□□□□ -0.84
ECHDC1-217ENST00000488087 POTEJP0CG39 1038 aa9.77□□□□□ -0.85
ECHDC1-217ENST00000488087 PLCB2Q00722 1185 aa9.77□□□□□ -0.85
ECHDC1-217ENST00000488087 SGIP1Q9BQI5 828 aa9.77□□□□□ -0.85
ECHDC1-217ENST00000488087 PDAP1Q13442 181 aaKnown RBP9.76□□□□□ -0.85
ECHDC1-217ENST00000488087 IFNL1Q8IU54 200 aa9.76□□□□□ -0.85
ECHDC1-217ENST00000488087 STK24Q9Y6E0 443 aa9.76□□□□□ -0.85
ECHDC1-217ENST00000488087 BCL11BQ9C0K0 894 aaPredicted RBP9.75□□□□□ -0.85
ECHDC1-217ENST00000488087 PAXIP1Q6ZW49 1069 aaPredicted RBP9.73□□□□□ -0.85
ECHDC1-217ENST00000488087 CFAP44Q96MT7 982 aa9.73□□□□□ -0.85
ECHDC1-217ENST00000488087 PSEN1P49768 467 aa9.72□□□□□ -0.85
ECHDC1-217ENST00000488087 LCE2DQ5TA82 110 aaPredicted RBP9.72□□□□□ -0.85
ECHDC1-217ENST00000488087 SPRYD3Q8NCJ5 442 aa9.69□□□□□ -0.86
ECHDC1-217ENST00000488087 HAP1P54257 671 aaPredicted RBP9.67□□□□□ -0.86
ECHDC1-217ENST00000488087 ATN1P54259 1190 aaPredicted RBP9.67□□□□□ -0.86
ECHDC1-217ENST00000488087 DNAJC5Q9H3Z4 198 aa9.66□□□□□ -0.86
ECHDC1-217ENST00000488087 NKX1-1Q15270 411 aaPredicted RBP9.64□□□□□ -0.87
ECHDC1-217ENST00000488087 CABP2Q9NPB3 220 aa9.63□□□□□ -0.87
ECHDC1-217ENST00000488087 TMEM106CQ9BVX2 250 aa9.62□□□□□ -0.87
ECHDC1-217ENST00000488087 CDAN1Q8IWY9 1227 aa9.61□□□□□ -0.87
ECHDC1-217ENST00000488087 TRPC6Q9Y210 931 aa9.61□□□□□ -0.87
ECHDC1-217ENST00000488087 GOLGA2Q08379 1002 aa9.6□□□□□ -0.87
ECHDC1-217ENST00000488087 RYDENQ9NUL5 291 aaKnown RBP9.6□□□□□ -0.87
ECHDC1-217ENST00000488087 BMP2KQ9NSY1 1161 aaPredicted RBP9.59□□□□□ -0.87
ECHDC1-217ENST00000488087 POTEFA5A3E0 1075 aa9.57□□□□□ -0.88
ECHDC1-217ENST00000488087 GTPBP6O43824 516 aaPredicted RBP9.57□□□□□ -0.88
ECHDC1-217ENST00000488087 SEC24BO95487 1268 aa9.57□□□□□ -0.88
ECHDC1-217ENST00000488087 TIE1P35590 1138 aa9.57□□□□□ -0.88
ECHDC1-217ENST00000488087 EFCAB3Q8N7B9 438 aa9.57□□□□□ -0.88
ECHDC1-217ENST00000488087 TTLL13PA6NNM8 815 aa9.55□□□□□ -0.88
ECHDC1-217ENST00000488087 MKRN3Q13064 507 aaKnown RBP9.53□□□□□ -0.88
ECHDC1-217ENST00000488087 SOX12O15370 315 aa9.52□□□□□ -0.89
ECHDC1-217ENST00000488087 MFRPQ9BY79 579 aa9.52□□□□□ -0.89
ECHDC1-217ENST00000488087 NLRP6P59044 892 aa9.51□□□□□ -0.89
ECHDC1-217ENST00000488087 TSHZ2Q9NRE2 1034 aa9.51□□□□□ -0.89
ECHDC1-217ENST00000488087 PHF8Q9UPP1 1060 aa9.5□□□□□ -0.89
ECHDC1-217ENST00000488087 TRIM35Q9UPQ4 493 aa9.5□□□□□ -0.89
ECHDC1-217ENST00000488087 COLQQ9Y215 455 aaPredicted RBP9.49□□□□□ -0.89
ECHDC1-217ENST00000488087 VSIG10Q8N0Z9 540 aa9.48□□□□□ -0.89
ECHDC1-217ENST00000488087 IER5LQ5T953 404 aa9.46□□□□□ -0.9
ECHDC1-217ENST00000488087 SLAIN1Q8ND83 568 aa9.45□□□□□ -0.9
ECHDC1-217ENST00000488087 FBXO22Q8NEZ5 403 aa9.45□□□□□ -0.9
ECHDC1-217ENST00000488087 ST18O60284 1047 aa9.44□□□□□ -0.9
ECHDC1-217ENST00000488087 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.44□□□□□ -0.9
ECHDC1-217ENST00000488087 PPP1R37O75864 691 aa9.4□□□□□ -0.9
ECHDC1-217ENST00000488087 MS4A4AQ96JQ5 239 aa9.4□□□□□ -0.9
ECHDC1-217ENST00000488087 KDM2AQ9Y2K7 1162 aa9.4□□□□□ -0.9
ECHDC1-217ENST00000488087 MMRN1Q13201 1228 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms