RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 POLA1P09884 1462 aaPredicted RBP26.26■■□□□ 1.79
VIM-206ENST00000487938 TIAM1Q13009 1591 aa26.26■■□□□ 1.79
VIM-206ENST00000487938 RAD54L2Q9Y4B4 1467 aa26.25■■□□□ 1.79
VIM-206ENST00000487938 ATP1B4Q9UN42 357 aaPredicted RBP26.24■■□□□ 1.79
VIM-206ENST00000487938 ABCA10Q8WWZ4 1543 aa26.24■■□□□ 1.79
VIM-206ENST00000487938 LRRC9Q6ZRR7 1453 aa26.19■■□□□ 1.78
VIM-206ENST00000487938 MAP3K1Q13233 1512 aa26.19■■□□□ 1.78
VIM-206ENST00000487938 RAB3GAP2Q9H2M9 1393 aa26.18■■□□□ 1.78
VIM-206ENST00000487938 DNAJC5BQ9UF47 199 aa26.17■■□□□ 1.78
VIM-206ENST00000487938 PHLDB1Q86UU1 1377 aa26.16■■□□□ 1.78
VIM-206ENST00000487938 PDS5BQ9NTI5 1447 aa26.16■■□□□ 1.78
VIM-206ENST00000487938 URB2Q14146 1524 aaKnown RBP26.16■■□□□ 1.78
VIM-206ENST00000487938 FAM50AQ14320 339 aaKnown RBP26.14■■□□□ 1.78
VIM-206ENST00000487938 FHAD1B1AJZ9 1412 aa26.14■■□□□ 1.77
VIM-206ENST00000487938 FHOD3Q2V2M9 1422 aa26.1■■□□□ 1.77
VIM-206ENST00000487938 PCF11O94913 1555 aaKnown RBP26.09■■□□□ 1.77
VIM-206ENST00000487938 SETD5Q9C0A6 1442 aa26.07■■□□□ 1.76
VIM-206ENST00000487938 CUL7Q14999 1698 aa26.04■■□□□ 1.76
VIM-206ENST00000487938 MAPKBP1O60336 1514 aa26.03■■□□□ 1.76
VIM-206ENST00000487938 WDR97A6NE52 1622 aa26.01■■□□□ 1.75
VIM-206ENST00000487938 CFAP43Q8NDM7 1665 aa26.01■■□□□ 1.75
VIM-206ENST00000487938 KIF21AQ7Z4S6 1674 aa25.98■■□□□ 1.75
VIM-206ENST00000487938 SIN3AQ96ST3 1273 aa25.97■■□□□ 1.75
VIM-206ENST00000487938 TDRD9Q8NDG6 1382 aaKnown RBP25.96■■□□□ 1.75
VIM-206ENST00000487938 CASKIN1Q8WXD9 1431 aa25.94■■□□□ 1.74
VIM-206ENST00000487938 FYCO1Q9BQS8 1478 aa25.94■■□□□ 1.74
VIM-206ENST00000487938 ABCA5Q8WWZ7 1642 aa25.93■■□□□ 1.74
VIM-206ENST00000487938 EFCAB5A4FU69 1503 aa25.93■■□□□ 1.74
VIM-206ENST00000487938 GAPVD1Q14C86 1478 aa25.91■■□□□ 1.74
VIM-206ENST00000487938 CTTNBP2Q8WZ74 1663 aa25.9■■□□□ 1.74
VIM-206ENST00000487938 AQRO60306 1485 aaKnown RBP eCLIP25.87■■□□□ 1.732e-7■■■■□ 24.2
VIM-206ENST00000487938 FMN1Q68DA7 1419 aa25.84■■□□□ 1.73
VIM-206ENST00000487938 TARBP1Q13395 1621 aaKnown RBP25.81■■□□□ 1.72
VIM-206ENST00000487938 SNAPC4Q5SXM2 1469 aa25.78■■□□□ 1.72
VIM-206ENST00000487938 MTUS2Q5JR59 1369 aa25.78■■□□□ 1.72
VIM-206ENST00000487938 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.77■■□□□ 1.72
VIM-206ENST00000487938 FGD6Q6ZV73 1430 aa25.76■■□□□ 1.71
VIM-206ENST00000487938 MRC2Q9UBG0 1479 aa25.76■■□□□ 1.71
VIM-206ENST00000487938 KCNH8Q96L42 1107 aa25.74■■□□□ 1.71
VIM-206ENST00000487938 DDX10Q13206 875 aaKnown RBP25.71■■□□□ 1.71
VIM-206ENST00000487938 SAMD9Q5K651 1589 aa25.7■■□□□ 1.7
VIM-206ENST00000487938 HIRIP3Q9BW71 556 aaPredicted RBP25.7■■□□□ 1.7
VIM-206ENST00000487938 TIMELESSQ9UNS1 1208 aa25.68■■□□□ 1.7
VIM-206ENST00000487938 PPP1R15AO75807 674 aaPredicted RBP25.68■■□□□ 1.7
VIM-206ENST00000487938 PTPRKQ15262 1439 aa25.68■■□□□ 1.7
VIM-206ENST00000487938 LRRIQ1Q96JM4 1722 aa25.68■■□□□ 1.7
VIM-206ENST00000487938 GRIN2BQ13224 1484 aa25.65■■□□□ 1.7
VIM-206ENST00000487938 NCOA2Q15596 1464 aa25.64■■□□□ 1.69
VIM-206ENST00000487938 PBRM1Q86U86 1689 aa25.62■■□□□ 1.69
VIM-206ENST00000487938 CCDC18Q5T9S5 1454 aa25.62■■□□□ 1.69
VIM-206ENST00000487938 MYOM3Q5VTT5 1437 aa25.59■■□□□ 1.69
VIM-206ENST00000487938 SUPT16HQ9Y5B9 1047 aaKnown RBP25.58■■□□□ 1.69
VIM-206ENST00000487938 HFM1A2PYH4 1435 aa25.58■■□□□ 1.69
VIM-206ENST00000487938 IFT140Q96RY7 1462 aa25.56■■□□□ 1.68
VIM-206ENST00000487938 WDR62O43379 1518 aa25.56■■□□□ 1.68
VIM-206ENST00000487938 ADAMTS12P58397 1594 aa25.55■■□□□ 1.68
VIM-206ENST00000487938 TONSLQ96HA7 1378 aa25.55■■□□□ 1.68
VIM-206ENST00000487938 PTPN23Q9H3S7 1636 aa25.54■■□□□ 1.68
VIM-206ENST00000487938 NAIPQ13075 1403 aa25.53■■□□□ 1.68
VIM-206ENST00000487938 SUPT6HQ7KZ85 1726 aaKnown RBP25.53■■□□□ 1.68
VIM-206ENST00000487938 UACAQ9BZF9 1416 aa25.53■■□□□ 1.68
VIM-206ENST00000487938 MAGI3Q5TCQ9 1506 aa25.51■■□□□ 1.67
VIM-206ENST00000487938 EHBP1L1Q8N3D4 1523 aa25.51■■□□□ 1.67
VIM-206ENST00000487938 CHIC2Q9UKJ5 165 aa25.51■■□□□ 1.67
VIM-206ENST00000487938 THOC2Q8NI27 1593 aaKnown RBP25.51■■□□□ 1.67
VIM-206ENST00000487938 RRP7BPQ9NSQ0 103 aa25.5■■□□□ 1.67
VIM-206ENST00000487938 ZNF608Q9ULD9 1512 aaPredicted RBP25.49■■□□□ 1.67
VIM-206ENST00000487938 ARID3CA6NKF2 412 aa25.49■■□□□ 1.67
VIM-206ENST00000487938 UGGT2Q9NYU1 1516 aa25.47■■□□□ 1.67
VIM-206ENST00000487938 IQGAP2Q13576 1575 aa25.47■■□□□ 1.67
VIM-206ENST00000487938 ERCC6Q03468 1493 aa25.43■■□□□ 1.66
VIM-206ENST00000487938 ARHGEF11O15085 1522 aa25.42■■□□□ 1.66
VIM-206ENST00000487938 ANP32CO43423 234 aa25.39■■□□□ 1.65
VIM-206ENST00000487938 TRIM52Q96A61 297 aa25.39■■□□□ 1.65
VIM-206ENST00000487938 EPRSP07814 1512 aaKnown RBP25.38■■□□□ 1.65
VIM-206ENST00000487938 HECW1Q76N89 1606 aa25.38■■□□□ 1.65
VIM-206ENST00000487938 CDK13Q14004 1512 aaKnown RBP25.37■■□□□ 1.65
VIM-206ENST00000487938 TCOF1Q13428 1488 aaKnown RBP25.34■■□□□ 1.65
VIM-206ENST00000487938 EIF4G3O43432 1585 aaKnown RBP25.33■■□□□ 1.65
VIM-206ENST00000487938 CCER2I3L3R5 266 aa25.32■■□□□ 1.64
VIM-206ENST00000487938 KIAA0586Q9BVV6 1533 aa25.3■■□□□ 1.64
VIM-206ENST00000487938 KDM6BO15054 1643 aa25.28■■□□□ 1.64
VIM-206ENST00000487938 KDM5BQ9UGL1 1544 aa25.28■■□□□ 1.64
VIM-206ENST00000487938 GRIN2AQ12879 1464 aa25.28■■□□□ 1.64
VIM-206ENST00000487938 DENND4BO75064 1496 aaPredicted RBP25.26■■□□□ 1.63
VIM-206ENST00000487938 MPHOSPH9Q99550 1183 aa25.25■■□□□ 1.63
VIM-206ENST00000487938 MIA2Q96PC5 1412 aa25.24■■□□□ 1.63
VIM-206ENST00000487938 FOXD1Q16676 465 aa25.24■■□□□ 1.63
VIM-206ENST00000487938 BCANQ96GW7 911 aa25.24■■□□□ 1.63
VIM-206ENST00000487938 GCC2Q8IWJ2 1684 aa25.23■■□□□ 1.63
VIM-206ENST00000487938 MAGI1Q96QZ7 1491 aaPredicted RBP25.22■■□□□ 1.63
VIM-206ENST00000487938 FKBP8Q14318 412 aa25.22■■□□□ 1.63
VIM-206ENST00000487938 DISP1Q96F81 1524 aa25.2■■□□□ 1.63
VIM-206ENST00000487938 KIAA0556O60303 1618 aa25.2■■□□□ 1.62
VIM-206ENST00000487938 HSPA5P11021 654 aaKnown RBP25.19■■□□□ 1.62
VIM-206ENST00000487938 ZNF644Q9H582 1327 aaPredicted RBP25.18■■□□□ 1.62
VIM-206ENST00000487938 AKNAQ7Z591 1439 aa25.18■■□□□ 1.62
VIM-206ENST00000487938 CHMP7Q8WUX9 453 aaPredicted RBP25.17■■□□□ 1.62
VIM-206ENST00000487938 SYNJ2O15056 1496 aa25.16■■□□□ 1.62
VIM-206ENST00000487938 L3MBTL2Q969R5 705 aa25.15■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms