RNA–Protein interactions for RNA: ENST00000487625.1

USP9X-208, Transcript of ubiquitin specific peptidase 9 X-linked, humanhuman

TSL 2

Gene USP9X, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP9X-208ENST00000487625 C7P10643 843 aa13.72□□□□□ -0.21
USP9X-208ENST00000487625 MAMSTRQ6ZN01 415 aa13.72□□□□□ -0.21
USP9X-208ENST00000487625 MS4A3Q96HJ5 214 aa13.7□□□□□ -0.22
USP9X-208ENST00000487625 STAG3Q9UJ98 1225 aa13.67□□□□□ -0.22
USP9X-208ENST00000487625 MNX1P50219 401 aaPredicted RBP13.62□□□□□ -0.23
USP9X-208ENST00000487625 SCUBE2Q9NQ36 999 aa13.62□□□□□ -0.23
USP9X-208ENST00000487625 NPM1P06748 294 aaKnown RBP eCLIP13.58□□□□□ -0.24
USP9X-208ENST00000487625 POTEFA5A3E0 1075 aa13.55□□□□□ -0.24
USP9X-208ENST00000487625 ATN1P54259 1190 aaPredicted RBP13.55□□□□□ -0.24
USP9X-208ENST00000487625 CDAN1Q8IWY9 1227 aa13.54□□□□□ -0.24
USP9X-208ENST00000487625 BMP2KQ9NSY1 1161 aaPredicted RBP13.41□□□□□ -0.26
USP9X-208ENST00000487625 TRPC6Q9Y210 931 aa13.39□□□□□ -0.27
USP9X-208ENST00000487625 CCDC61Q9Y6R9 512 aa13.37□□□□□ -0.27
USP9X-208ENST00000487625 TSPYL2Q9H2G4 693 aaPredicted RBP13.36□□□□□ -0.27
USP9X-208ENST00000487625 KIF12Q96FN5 646 aa13.34□□□□□ -0.27
USP9X-208ENST00000487625 COLQQ9Y215 455 aaPredicted RBP13.34□□□□□ -0.27
USP9X-208ENST00000487625 SPDYE4A6NLX3 237 aa13.33□□□□□ -0.28
USP9X-208ENST00000487625 MMRN1Q13201 1228 aa13.3□□□□□ -0.28
USP9X-208ENST00000487625 ST18O60284 1047 aa13.28□□□□□ -0.28
USP9X-208ENST00000487625 TIE1P35590 1138 aa13.27□□□□□ -0.29
USP9X-208ENST00000487625 SPNS2Q8IVW8 549 aa13.25□□□□□ -0.29
USP9X-208ENST00000487625 SEC24BO95487 1268 aa13.22□□□□□ -0.29
USP9X-208ENST00000487625 MAP3K13O43283 966 aa13.21□□□□□ -0.29
USP9X-208ENST00000487625 TTLL13PA6NNM8 815 aa13.2□□□□□ -0.3
USP9X-208ENST00000487625 SLAIN1Q8ND83 568 aa13.18□□□□□ -0.3
USP9X-208ENST00000487625 IER5LQ5T953 404 aa13.12□□□□□ -0.31
USP9X-208ENST00000487625 TRIM35Q9UPQ4 493 aa13.11□□□□□ -0.31
USP9X-208ENST00000487625 RASEFQ8IZ41 740 aa13.05□□□□□ -0.32
USP9X-208ENST00000487625 TMEM121BQ9BXQ6 578 aaPredicted RBP13.03□□□□□ -0.32
USP9X-208ENST00000487625 MARVELD3Q96A59 401 aa12.98□□□□□ -0.33
USP9X-208ENST00000487625 CSRNP3Q8WYN3 585 aa12.97□□□□□ -0.33
USP9X-208ENST00000487625 SGIP1Q9BQI5 828 aa12.94□□□□□ -0.34
USP9X-208ENST00000487625 PCDHB13Q9Y5F0 798 aa12.94□□□□□ -0.34
USP9X-208ENST00000487625 PLCG2P16885 1265 aa12.93□□□□□ -0.34
USP9X-208ENST00000487625 PROM2Q8N271 834 aa12.93□□□□□ -0.34
USP9X-208ENST00000487625 IRX5P78411 483 aaPredicted RBP12.91□□□□□ -0.34
USP9X-208ENST00000487625 SNPHO15079 494 aa12.87□□□□□ -0.35
USP9X-208ENST00000487625 IFNL1Q8IU54 200 aa12.87□□□□□ -0.35
USP9X-208ENST00000487625 TMEM106CQ9BVX2 250 aa12.86□□□□□ -0.35
USP9X-208ENST00000487625 KRTAP3-3Q9BYR6 98 aa12.86□□□□□ -0.35
USP9X-208ENST00000487625 KRTAP3-2Q9BYR7 98 aa12.86□□□□□ -0.35
USP9X-208ENST00000487625 POTEB3A0JP26 581 aa12.81□□□□□ -0.36
USP9X-208ENST00000487625 POTEBQ6S5H4 581 aa12.81□□□□□ -0.36
USP9X-208ENST00000487625 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.79□□□□□ -0.36
USP9X-208ENST00000487625 PLEKHG5O94827 1062 aa12.78□□□□□ -0.36
USP9X-208ENST00000487625 EMP3P54852 163 aa12.78□□□□□ -0.36
USP9X-208ENST00000487625 MIER1Q8N108 512 aa12.78□□□□□ -0.36
USP9X-208ENST00000487625 OCEL1Q9H607 264 aa12.77□□□□□ -0.37
USP9X-208ENST00000487625 HS3ST6Q96QI5 342 aa12.75□□□□□ -0.37
USP9X-208ENST00000487625 NUBP1P53384 320 aa12.71□□□□□ -0.37
USP9X-208ENST00000487625 FAM205CA6NFA0 338 aa12.69□□□□□ -0.38
USP9X-208ENST00000487625 PDCD7Q8N8D1 485 aaKnown RBP12.6□□□□□ -0.39
USP9X-208ENST00000487625 PLCD3Q8N3E9 789 aa12.58□□□□□ -0.4
USP9X-208ENST00000487625 C3orf67Q6ZVT6 689 aa12.57□□□□□ -0.4
USP9X-208ENST00000487625 FAM212AQ96EL1 285 aa12.57□□□□□ -0.4
USP9X-208ENST00000487625 RNF166Q96A37 237 aaPredicted RBP12.52□□□□□ -0.41
USP9X-208ENST00000487625 ZBTB47Q9UFB7 747 aaPredicted RBP12.5□□□□□ -0.41
USP9X-208ENST00000487625 PCDHB8Q9UN66 801 aa12.5□□□□□ -0.41
USP9X-208ENST00000487625 L3MBTL3Q96JM7 780 aaPredicted RBP12.47□□□□□ -0.41
USP9X-208ENST00000487625 PYGBP11216 843 aa12.46□□□□□ -0.41
USP9X-208ENST00000487625 HOXB3P14651 431 aaPredicted RBP12.42□□□□□ -0.42
USP9X-208ENST00000487625 HOXB1P14653 301 aaPredicted RBP12.37□□□□□ -0.43
USP9X-208ENST00000487625 MYT1LQ9UL68 1186 aa12.37□□□□□ -0.43
USP9X-208ENST00000487625 MKRN3Q13064 507 aaKnown RBP12.36□□□□□ -0.43
USP9X-208ENST00000487625 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.35□□□□□ -0.438e-9■■□□□ 13.5
USP9X-208ENST00000487625 DCAF8Q5TAQ9 597 aa12.34□□□□□ -0.43
USP9X-208ENST00000487625 ERBB3P21860 1342 aa12.34□□□□□ -0.43
USP9X-208ENST00000487625 GOLGA2Q08379 1002 aa12.31□□□□□ -0.44
USP9X-208ENST00000487625 EHMT2Q96KQ7 1210 aa12.31□□□□□ -0.44
USP9X-208ENST00000487625 ILDR1Q86SU0 546 aaPredicted RBP12.3□□□□□ -0.44
USP9X-208ENST00000487625 DPY19L2Q6NUT2 758 aa12.28□□□□□ -0.44
USP9X-208ENST00000487625 ZNF710Q8N1W2 664 aa12.27□□□□□ -0.45
USP9X-208ENST00000487625 VARS2Q5ST30 1063 aaKnown RBP12.26□□□□□ -0.45
USP9X-208ENST00000487625 ZNF467Q7Z7K2 595 aaPredicted RBP12.22□□□□□ -0.45
USP9X-208ENST00000487625 DOK7Q18PE1 504 aa12.21□□□□□ -0.45
USP9X-208ENST00000487625 BOLA1Q9Y3E2 137 aa12.2□□□□□ -0.46
USP9X-208ENST00000487625 PSEN1P49768 467 aa12.18□□□□□ -0.46
USP9X-208ENST00000487625 ZNF687Q8N1G0 1237 aa12.18□□□□□ -0.46
USP9X-208ENST00000487625 PTGER2P43116 358 aa12.16□□□□□ -0.46
USP9X-208ENST00000487625 G3V3G9 751 aa12.12□□□□□ -0.47
USP9X-208ENST00000487625 RIMBP2O15034 1052 aa12.1□□□□□ -0.47
USP9X-208ENST00000487625 CHRM1P11229 460 aaPredicted RBP12.06□□□□□ -0.48
USP9X-208ENST00000487625 GPR153Q6NV75 609 aa12.04□□□□□ -0.48
USP9X-208ENST00000487625 ANKRD13DQ6ZTN6 518 aa12.04□□□□□ -0.48
USP9X-208ENST00000487625 ZSWIM6Q9HCJ5 1215 aa12.04□□□□□ -0.48
USP9X-208ENST00000487625 CABP2Q9NPB3 220 aa12.04□□□□□ -0.48
USP9X-208ENST00000487625 GSE1Q14687 1217 aa12.03□□□□□ -0.48
USP9X-208ENST00000487625 PLA2G2EQ9NZK7 142 aa12.03□□□□□ -0.48
USP9X-208ENST00000487625 PDAP1Q13442 181 aaKnown RBP12.02□□□□□ -0.49
USP9X-208ENST00000487625 TMEM92Q6UXU6 159 aa12□□□□□ -0.49
USP9X-208ENST00000487625 LSM11P83369 360 aaKnown RBP eCLIP11.96□□□□□ -0.49
USP9X-208ENST00000487625 ARSIQ5FYB1 569 aa11.89□□□□□ -0.51
USP9X-208ENST00000487625 ZNF316A6NFI3 1004 aaPredicted RBP11.88□□□□□ -0.51
USP9X-208ENST00000487625 MICALL2Q8IY33 904 aa11.88□□□□□ -0.51
USP9X-208ENST00000487625 KHSRPQ92945 711 aaKnown RBP eCLIP11.86□□□□□ -0.512e-6■□□□□ 8.8
USP9X-208ENST00000487625 HCSTQ9UBK5 93 aa11.85□□□□□ -0.51
USP9X-208ENST00000487625 KLHL34Q8N239 644 aa11.83□□□□□ -0.52
USP9X-208ENST00000487625 EFCAB3Q8N7B9 438 aa11.81□□□□□ -0.52
USP9X-208ENST00000487625 POTEEQ6S8J3 1075 aa11.8□□□□□ -0.52
USP9X-208ENST00000487625 FKBP8Q14318 412 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms