RNA–Protein interactions for RNA: ENST00000486211.1

XRN1-212, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 2

Gene XRN1, Length 1,180 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-212ENST00000486211 CHMP7Q8WUX9 453 aaPredicted RBP16■□□□□ 0.15
XRN1-212ENST00000486211 WDR97A6NE52 1622 aa15.99■□□□□ 0.15
XRN1-212ENST00000486211 SOGA1O94964 1423 aa15.98■□□□□ 0.15
XRN1-212ENST00000486211 SYNJ2O15056 1496 aa15.97■□□□□ 0.15
XRN1-212ENST00000486211 GRIN2BQ13224 1484 aa15.93■□□□□ 0.14
XRN1-212ENST00000486211 ERCC6L2Q5T890 1561 aa15.92■□□□□ 0.14
XRN1-212ENST00000486211 FGD5Q6ZNL6 1462 aa15.9■□□□□ 0.14
XRN1-212ENST00000486211 KIF13AQ9H1H9 1805 aa15.89■□□□□ 0.13
XRN1-212ENST00000486211 KDM4FA0A1W2PPD8 638 aa15.86■□□□□ 0.13
XRN1-212ENST00000486211 KCNA4P22459 653 aa15.82■□□□□ 0.12
XRN1-212ENST00000486211 PBRM1Q86U86 1689 aa15.82■□□□□ 0.12
XRN1-212ENST00000486211 CEP170Q5SW79 1584 aa15.8■□□□□ 0.12
XRN1-212ENST00000486211 CUX1P39880 1505 aa15.8■□□□□ 0.12
XRN1-212ENST00000486211 SHROOM2Q13796 1616 aa15.75■□□□□ 0.11
XRN1-212ENST00000486211 GRIN2AQ12879 1464 aa15.74■□□□□ 0.11
XRN1-212ENST00000486211 NUP160Q12769 1436 aa15.74■□□□□ 0.11
XRN1-212ENST00000486211 ABCA5Q8WWZ7 1642 aa15.73■□□□□ 0.11
XRN1-212ENST00000486211 ABCC10Q5T3U5 1492 aa15.72■□□□□ 0.11
XRN1-212ENST00000486211 ABCA10Q8WWZ4 1543 aa15.68■□□□□ 0.1
XRN1-212ENST00000486211 FAM69CQ0P6D2 419 aa15.68■□□□□ 0.1
XRN1-212ENST00000486211 KDM6BO15054 1643 aa15.68■□□□□ 0.1
XRN1-212ENST00000486211 DIP2BQ9P265 1576 aa15.67■□□□□ 0.1
XRN1-212ENST00000486211 U3KPZ7 1027 aaPredicted RBP15.66■□□□□ 0.1
XRN1-212ENST00000486211 ADAMTS12P58397 1594 aa15.66■□□□□ 0.1
XRN1-212ENST00000486211 MAPKBP1O60336 1514 aa15.65■□□□□ 0.1
XRN1-212ENST00000486211 PRG4Q92954 1404 aaPredicted RBP15.6■□□□□ 0.09
XRN1-212ENST00000486211 HECW2Q9P2P5 1572 aa15.57■□□□□ 0.08
XRN1-212ENST00000486211 FHAD1B1AJZ9 1412 aa15.56■□□□□ 0.08
XRN1-212ENST00000486211 ADCY10Q96PN6 1610 aa15.55■□□□□ 0.08
XRN1-212ENST00000486211 ADGRL1O94910 1474 aa15.55■□□□□ 0.08
XRN1-212ENST00000486211 TSPOAP1O95153 1857 aa15.53■□□□□ 0.08
XRN1-212ENST00000486211 JPH4Q96JJ6 628 aa15.52■□□□□ 0.08
XRN1-212ENST00000486211 NPM1P06748 294 aaKnown RBP eCLIP15.51■□□□□ 0.07
XRN1-212ENST00000486211 CAPN15O75808 1086 aa15.49■□□□□ 0.07
XRN1-212ENST00000486211 SLC4A2P04920 1241 aa15.47■□□□□ 0.07
XRN1-212ENST00000486211 SPINK5Q9NQ38 1064 aaPredicted RBP15.47■□□□□ 0.07
XRN1-212ENST00000486211 ERICH3Q5RHP9 1530 aa15.46■□□□□ 0.07
XRN1-212ENST00000486211 RUSC2Q8N2Y8 1516 aa15.46■□□□□ 0.07
XRN1-212ENST00000486211 WRNQ14191 1432 aaPredicted RBP eCLIP15.45■□□□□ 0.06
XRN1-212ENST00000486211 FBXO41Q8TF61 875 aa15.43■□□□□ 0.06
XRN1-212ENST00000486211 PPRC1Q5VV67 1664 aaKnown RBP15.43■□□□□ 0.06
XRN1-212ENST00000486211 COL17A1Q9UMD9 1497 aaPredicted RBP15.4■□□□□ 0.06
XRN1-212ENST00000486211 DSG3P32926 999 aa15.37■□□□□ 0.05
XRN1-212ENST00000486211 GLI2P10070 1586 aa15.36■□□□□ 0.05
XRN1-212ENST00000486211 BIVM-ERCC5R4GMW8 1640 aa15.35■□□□□ 0.05
XRN1-212ENST00000486211 TOP2BQ02880 1626 aa15.34■□□□□ 0.05
XRN1-212ENST00000486211 ASXL2Q76L83 1435 aa15.3■□□□□ 0.04
XRN1-212ENST00000486211 ABCC2Q92887 1545 aa15.29■□□□□ 0.04
XRN1-212ENST00000486211 APLP2Q06481 763 aa15.29■□□□□ 0.04
XRN1-212ENST00000486211 KIAA0586Q9BVV6 1533 aa15.28■□□□□ 0.04
XRN1-212ENST00000486211 PLB1Q6P1J6 1458 aa15.28■□□□□ 0.04
XRN1-212ENST00000486211 MAP3K4Q9Y6R4 1608 aa15.25■□□□□ 0.03
XRN1-212ENST00000486211 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.25■□□□□ 0.03
XRN1-212ENST00000486211 HNRNPUL2Q1KMD3 747 aaKnown RBP15.25■□□□□ 0.03
XRN1-212ENST00000486211 PTPRGP23470 1445 aa15.25■□□□□ 0.03
XRN1-212ENST00000486211 LMTK3Q96Q04 1460 aa15.22■□□□□ 0.03
XRN1-212ENST00000486211 EPRSP07814 1512 aaKnown RBP15.22■□□□□ 0.03
XRN1-212ENST00000486211 CUL7Q14999 1698 aa15.21■□□□□ 0.03
XRN1-212ENST00000486211 TEX14Q8IWB6 1497 aa15.2■□□□□ 0.02
XRN1-212ENST00000486211 UHRF1BP1LA0JNW5 1464 aa15.2■□□□□ 0.02
XRN1-212ENST00000486211 ZNF219Q9P2Y4 722 aaPredicted RBP15.18■□□□□ 0.02
XRN1-212ENST00000486211 TNIKQ9UKE5 1360 aa15.17■□□□□ 0.02
XRN1-212ENST00000486211 SAMD1Q6SPF0 538 aaPredicted RBP15.15■□□□□ 0.02
XRN1-212ENST00000486211 TTBK1Q5TCY1 1321 aaPredicted RBP15.14■□□□□ 0.01
XRN1-212ENST00000486211 KDM5BQ9UGL1 1544 aa15.13■□□□□ 0.01
XRN1-212ENST00000486211 UACAQ9BZF9 1416 aa15.13■□□□□ 0.01
XRN1-212ENST00000486211 IGF1RP08069 1367 aa15.11■□□□□ 0.01
XRN1-212ENST00000486211 KIF21BO75037 1637 aa15.1■□□□□ 0.01
XRN1-212ENST00000486211 CARMIL2Q6F5E8 1435 aa15.1■□□□□ 0.01
XRN1-212ENST00000486211 ABCB7O75027 752 aa15.1■□□□□ 0.01
XRN1-212ENST00000486211 ILDR2Q71H61 639 aa15.1■□□□□ 0.01
XRN1-212ENST00000486211 SOCS7O14512 581 aa15.09■□□□□ 0.01
XRN1-212ENST00000486211 ZCCHC11Q5TAX3 1644 aaKnown RBP15.08■□□□□ 0
XRN1-212ENST00000486211 PTPRMP28827 1452 aa15.07■□□□□ 0
XRN1-212ENST00000486211 MAGI3Q5TCQ9 1506 aa15.05■□□□□ -0
XRN1-212ENST00000486211 DISP1Q96F81 1524 aa15.05■□□□□ -0
XRN1-212ENST00000486211 ADAMTSL3P82987 1691 aa15.05■□□□□ -0
XRN1-212ENST00000486211 PCF11O94913 1555 aaKnown RBP15.04■□□□□ -0
XRN1-212ENST00000486211 WDR7Q9Y4E6 1490 aa15.04■□□□□ -0
XRN1-212ENST00000486211 IQGAP2Q13576 1575 aa15.02■□□□□ -0
XRN1-212ENST00000486211 CD109Q6YHK3 1445 aa15□□□□□ -0.01
XRN1-212ENST00000486211 CFAP43Q8NDM7 1665 aa15□□□□□ -0.01
XRN1-212ENST00000486211 MYCNP04198 464 aaPredicted RBP14.99□□□□□ -0.01
XRN1-212ENST00000486211 KIF27Q86VH2 1401 aa14.99□□□□□ -0.01
XRN1-212ENST00000486211 DISP3Q9P2K9 1392 aa14.98□□□□□ -0.01
XRN1-212ENST00000486211 CARMIL1Q5VZK9 1371 aa14.97□□□□□ -0.01
XRN1-212ENST00000486211 ARAP3Q8WWN8 1544 aa14.96□□□□□ -0.02
XRN1-212ENST00000486211 SLC4A1APQ9BWU0 796 aaKnown RBP14.95□□□□□ -0.02
XRN1-212ENST00000486211 CERKQ8TCT0 537 aa14.94□□□□□ -0.02
XRN1-212ENST00000486211 UGGT2Q9NYU1 1516 aa14.93□□□□□ -0.02
XRN1-212ENST00000486211 MADDQ8WXG6 1647 aa14.92□□□□□ -0.02
XRN1-212ENST00000486211 BCORL1Q5H9F3 1711 aa14.92□□□□□ -0.02
XRN1-212ENST00000486211 KIAA0556O60303 1618 aa14.92□□□□□ -0.02
XRN1-212ENST00000486211 HSPA2P54652 639 aa14.88□□□□□ -0.03
XRN1-212ENST00000486211 KCNH8Q96L42 1107 aa14.88□□□□□ -0.03
XRN1-212ENST00000486211 SPATA31D1Q6ZQQ2 1576 aa14.86□□□□□ -0.03
XRN1-212ENST00000486211 SUPT5HO00267 1087 aaKnown RBP14.85□□□□□ -0.03
XRN1-212ENST00000486211 ABCA8O94911 1581 aa14.84□□□□□ -0.03
XRN1-212ENST00000486211 RIMS1Q86UR5 1692 aaKnown RBP14.84□□□□□ -0.03
XRN1-212ENST00000486211 POTEHQ6S545 545 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms