RNA–Protein interactions for RNA: ENST00000481131.5

UPF3A-207, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 678 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-207ENST00000481131 DCAF8L2P0C7V8 631 aa12.93□□□□□ -0.34
UPF3A-207ENST00000481131 ECM2O94769 699 aaPredicted RBP12.92□□□□□ -0.34
UPF3A-207ENST00000481131 PLEKHG5O94827 1062 aa12.89□□□□□ -0.35
UPF3A-207ENST00000481131 RASEFQ8IZ41 740 aa12.89□□□□□ -0.35
UPF3A-207ENST00000481131 PHF12Q96QT6 1004 aa12.88□□□□□ -0.35
UPF3A-207ENST00000481131 ZBTB47Q9UFB7 747 aaPredicted RBP12.88□□□□□ -0.35
UPF3A-207ENST00000481131 TSPYL2Q9H2G4 693 aaPredicted RBP12.86□□□□□ -0.35
UPF3A-207ENST00000481131 PLCB2Q00722 1185 aa12.85□□□□□ -0.35
UPF3A-207ENST00000481131 RGL2O15211 777 aa12.84□□□□□ -0.35
UPF3A-207ENST00000481131 GALR2O43603 387 aaPredicted RBP12.84□□□□□ -0.35
UPF3A-207ENST00000481131 NUBP1P53384 320 aa12.84□□□□□ -0.35
UPF3A-207ENST00000481131 LHX8Q68G74 356 aa12.82□□□□□ -0.36
UPF3A-207ENST00000481131 CIZ1Q9ULV3 898 aaPredicted RBP12.82□□□□□ -0.36
UPF3A-207ENST00000481131 PAK3O75914 559 aaPredicted RBP12.8□□□□□ -0.36
UPF3A-207ENST00000481131 CCDC61Q9Y6R9 512 aa12.79□□□□□ -0.36
UPF3A-207ENST00000481131 DCBLD2Q96PD2 775 aa12.77□□□□□ -0.37
UPF3A-207ENST00000481131 MS4A3Q96HJ5 214 aa12.69□□□□□ -0.38
UPF3A-207ENST00000481131 TRIM41Q8WV44 630 aa12.68□□□□□ -0.38
UPF3A-207ENST00000481131 BBXQ8WY36 941 aaPredicted RBP12.68□□□□□ -0.38
UPF3A-207ENST00000481131 GSE1Q14687 1217 aa12.67□□□□□ -0.38
UPF3A-207ENST00000481131 KIF12Q96FN5 646 aa12.67□□□□□ -0.38
UPF3A-207ENST00000481131 RNF25Q96BH1 459 aaPredicted RBP12.65□□□□□ -0.38
UPF3A-207ENST00000481131 MAP3K13O43283 966 aa12.64□□□□□ -0.39
UPF3A-207ENST00000481131 HAP1P54257 671 aaPredicted RBP12.64□□□□□ -0.39
UPF3A-207ENST00000481131 PELP1Q8IZL8 1130 aaKnown RBP12.64□□□□□ -0.39
UPF3A-207ENST00000481131 DCAF8Q5TAQ9 597 aa12.62□□□□□ -0.39
UPF3A-207ENST00000481131 FAM212AQ96EL1 285 aa12.62□□□□□ -0.39
UPF3A-207ENST00000481131 TRPC6Q9Y210 931 aa12.62□□□□□ -0.39
UPF3A-207ENST00000481131 ASTLQ6HA08 431 aaPredicted RBP12.61□□□□□ -0.39
UPF3A-207ENST00000481131 CHGAP10645 457 aaKnown RBP12.59□□□□□ -0.39
UPF3A-207ENST00000481131 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.59□□□□□ -0.39
UPF3A-207ENST00000481131 POTEB2H3BUK9 544 aa12.57□□□□□ -0.4
UPF3A-207ENST00000481131 ATMINO43313 823 aaPredicted RBP12.57□□□□□ -0.4
UPF3A-207ENST00000481131 PYGBP11216 843 aa12.57□□□□□ -0.4
UPF3A-207ENST00000481131 PAXIP1Q6ZW49 1069 aaPredicted RBP12.57□□□□□ -0.4
UPF3A-207ENST00000481131 HS6ST3Q8IZP7 471 aa12.53□□□□□ -0.4
UPF3A-207ENST00000481131 IFNL1Q8IU54 200 aa12.52□□□□□ -0.41
UPF3A-207ENST00000481131 CFAP44Q96MT7 982 aa12.52□□□□□ -0.41
UPF3A-207ENST00000481131 RIOK3O14730 519 aaKnown RBP12.51□□□□□ -0.41
UPF3A-207ENST00000481131 PCDHB13Q9Y5F0 798 aa12.51□□□□□ -0.41
UPF3A-207ENST00000481131 CHRM1P11229 460 aaPredicted RBP12.5□□□□□ -0.41
UPF3A-207ENST00000481131 OTUD5Q96G74 571 aa12.48□□□□□ -0.41
UPF3A-207ENST00000481131 ATN1P54259 1190 aaPredicted RBP12.47□□□□□ -0.41
UPF3A-207ENST00000481131 SPRYD3Q8NCJ5 442 aa12.47□□□□□ -0.41
UPF3A-207ENST00000481131 BMP2KQ9NSY1 1161 aaPredicted RBP12.47□□□□□ -0.41
UPF3A-207ENST00000481131 C7P10643 843 aa12.45□□□□□ -0.42
UPF3A-207ENST00000481131 VSIG10Q8N0Z9 540 aa12.45□□□□□ -0.42
UPF3A-207ENST00000481131 DNAJC5Q9H3Z4 198 aa12.45□□□□□ -0.42
UPF3A-207ENST00000481131 PCDHB8Q9UN66 801 aa12.45□□□□□ -0.42
UPF3A-207ENST00000481131 SLC39A7Q92504 469 aa12.44□□□□□ -0.42
UPF3A-207ENST00000481131 SGIP1Q9BQI5 828 aa12.44□□□□□ -0.42
UPF3A-207ENST00000481131 METRNQ9UJH8 293 aa12.44□□□□□ -0.42
UPF3A-207ENST00000481131 KDM2AQ9Y2K7 1162 aa12.43□□□□□ -0.42
UPF3A-207ENST00000481131 POTEJP0CG39 1038 aa12.42□□□□□ -0.42
UPF3A-207ENST00000481131 TIE1P35590 1138 aa12.42□□□□□ -0.42
UPF3A-207ENST00000481131 NKX1-1Q15270 411 aaPredicted RBP12.41□□□□□ -0.42
UPF3A-207ENST00000481131 VGFO15240 615 aaPredicted RBP12.4□□□□□ -0.42
UPF3A-207ENST00000481131 TSHZ2Q9NRE2 1034 aa12.4□□□□□ -0.42
UPF3A-207ENST00000481131 POTEFA5A3E0 1075 aa12.39□□□□□ -0.43
UPF3A-207ENST00000481131 TTLL13PA6NNM8 815 aa12.39□□□□□ -0.43
UPF3A-207ENST00000481131 TAOK2Q9UL54 1235 aa12.38□□□□□ -0.43
UPF3A-207ENST00000481131 STK25O00506 426 aa12.36□□□□□ -0.43
UPF3A-207ENST00000481131 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.35□□□□□ -0.43
UPF3A-207ENST00000481131 ZFP91Q96JP5 570 aaPredicted RBP12.35□□□□□ -0.43
UPF3A-207ENST00000481131 TMEM106CQ9BVX2 250 aa12.32□□□□□ -0.44
UPF3A-207ENST00000481131 BCL11BQ9C0K0 894 aaPredicted RBP12.31□□□□□ -0.44
UPF3A-207ENST00000481131 GTPBP6O43824 516 aaPredicted RBP12.3□□□□□ -0.44
UPF3A-207ENST00000481131 TRIM35Q9UPQ4 493 aa12.3□□□□□ -0.44
UPF3A-207ENST00000481131 STK24Q9Y6E0 443 aa12.28□□□□□ -0.44
UPF3A-207ENST00000481131 ZNF467Q7Z7K2 595 aaPredicted RBP12.26□□□□□ -0.45
UPF3A-207ENST00000481131 COLQQ9Y215 455 aaPredicted RBP12.26□□□□□ -0.45
UPF3A-207ENST00000481131 PSEN1P49768 467 aa12.23□□□□□ -0.45
UPF3A-207ENST00000481131 IER5LQ5T953 404 aa12.23□□□□□ -0.45
UPF3A-207ENST00000481131 MAMSTRQ6ZN01 415 aa12.21□□□□□ -0.45
UPF3A-207ENST00000481131 BCANQ96GW7 911 aa12.21□□□□□ -0.45
UPF3A-207ENST00000481131 PDAP1Q13442 181 aaKnown RBP12.18□□□□□ -0.46
UPF3A-207ENST00000481131 SEC24BO95487 1268 aa12.14□□□□□ -0.47
UPF3A-207ENST00000481131 IRX5P78411 483 aaPredicted RBP12.14□□□□□ -0.47
UPF3A-207ENST00000481131 SCUBE2Q9NQ36 999 aa12.13□□□□□ -0.47
UPF3A-207ENST00000481131 LCE2DQ5TA82 110 aaPredicted RBP12.1□□□□□ -0.47
UPF3A-207ENST00000481131 CABP2Q9NPB3 220 aa12.1□□□□□ -0.47
UPF3A-207ENST00000481131 RYDENQ9NUL5 291 aaKnown RBP12.09□□□□□ -0.47
UPF3A-207ENST00000481131 PDCD7Q8N8D1 485 aaKnown RBP12.06□□□□□ -0.48
UPF3A-207ENST00000481131 POTEMA6NI47 508 aa12.04□□□□□ -0.48
UPF3A-207ENST00000481131 MFRPQ9BY79 579 aa12.04□□□□□ -0.48
UPF3A-207ENST00000481131 PLCG2P16885 1265 aa12.03□□□□□ -0.48
UPF3A-207ENST00000481131 OCEL1Q9H607 264 aa12.03□□□□□ -0.48
UPF3A-207ENST00000481131 MKRN3Q13064 507 aaKnown RBP12.02□□□□□ -0.49
UPF3A-207ENST00000481131 EFCAB3Q8N7B9 438 aa12.02□□□□□ -0.49
UPF3A-207ENST00000481131 GOLGA2Q08379 1002 aa12.01□□□□□ -0.49
UPF3A-207ENST00000481131 POTEGQ6S5H5 508 aa12.01□□□□□ -0.49
UPF3A-207ENST00000481131 ILDR1Q86SU0 546 aaPredicted RBP12□□□□□ -0.49
UPF3A-207ENST00000481131 PRKCSHP14314 528 aaPredicted RBP11.99□□□□□ -0.49
UPF3A-207ENST00000481131 DPY19L2Q6NUT2 758 aa11.99□□□□□ -0.49
UPF3A-207ENST00000481131 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.99□□□□□ -0.49
UPF3A-207ENST00000481131 CADPS2Q86UW7 1296 aa11.98□□□□□ -0.49
UPF3A-207ENST00000481131 FBXO22Q8NEZ5 403 aa11.96□□□□□ -0.49
UPF3A-207ENST00000481131 FAM163AQ96GL9 167 aaPredicted RBP11.96□□□□□ -0.49
UPF3A-207ENST00000481131 PPP1R37O75864 691 aa11.93□□□□□ -0.5
UPF3A-207ENST00000481131 PHF8Q9UPP1 1060 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms