RNA–Protein interactions for RNA: ENST00000481131.5

UPF3A-207, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 678 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-207ENST00000481131 AEBP2Q6ZN18 517 aaPredicted RBP25.86■■□□□ 1.73
UPF3A-207ENST00000481131 CHIC1Q5VXU3 224 aa24.57■■□□□ 1.52
UPF3A-207ENST00000481131 SENP3Q9H4L4 574 aaPredicted RBP21.95■■□□□ 1.1
UPF3A-207ENST00000481131 PHF23Q9BUL5 403 aaPredicted RBP21.71■■□□□ 1.07
UPF3A-207ENST00000481131 FOXD1Q16676 465 aa20.52■□□□□ 0.88
UPF3A-207ENST00000481131 PLPPR3Q6T4P5 718 aa19.68■□□□□ 0.74
UPF3A-207ENST00000481131 PPP6R1Q9UPN7 881 aa19.27■□□□□ 0.68
UPF3A-207ENST00000481131 ADRA2BP18089 450 aa19.15■□□□□ 0.66
UPF3A-207ENST00000481131 MSH5O43196 834 aa19.1■□□□□ 0.65
UPF3A-207ENST00000481131 PIAS4Q8N2W9 510 aaPredicted RBP19.09■□□□□ 0.65
UPF3A-207ENST00000481131 POTEDQ86YR6 584 aa18.61■□□□□ 0.57
UPF3A-207ENST00000481131 MAPK8IP2Q13387 824 aaPredicted RBP17.6■□□□□ 0.41
UPF3A-207ENST00000481131 DMRT2Q9Y5R5 561 aa17.46■□□□□ 0.39
UPF3A-207ENST00000481131 SCAF1Q9H7N4 1312 aaKnown RBP17.44■□□□□ 0.38
UPF3A-207ENST00000481131 PPP4R3CPQ6ZMV5 832 aa17.38■□□□□ 0.37
UPF3A-207ENST00000481131 KCNA4P22459 653 aa17.02■□□□□ 0.32
UPF3A-207ENST00000481131 CNKSR2Q8WXI2 1034 aa16.9■□□□□ 0.3
UPF3A-207ENST00000481131 HOXD11P31277 338 aaPredicted RBP16.87■□□□□ 0.29
UPF3A-207ENST00000481131 RNF216Q9NWF9 866 aaPredicted RBP16.72■□□□□ 0.27
UPF3A-207ENST00000481131 NCBP3Q53F19 620 aaKnown RBP16.67■□□□□ 0.26
UPF3A-207ENST00000481131 NPM3O75607 178 aaKnown RBP16.61■□□□□ 0.25
UPF3A-207ENST00000481131 DCAF8L1A6NGE4 600 aa16.57■□□□□ 0.24
UPF3A-207ENST00000481131 RNF39Q9H2S5 420 aa16.37■□□□□ 0.21
UPF3A-207ENST00000481131 EHMT2Q96KQ7 1210 aa16.34■□□□□ 0.21
UPF3A-207ENST00000481131 CACNB1Q02641 598 aaPredicted RBP16.32■□□□□ 0.2
UPF3A-207ENST00000481131 DNAJC5BQ9UF47 199 aa16.31■□□□□ 0.2
UPF3A-207ENST00000481131 SLC4A1APQ9BWU0 796 aaKnown RBP16.24■□□□□ 0.19
UPF3A-207ENST00000481131 C1QBPQ07021 282 aaKnown RBP16.1■□□□□ 0.17
UPF3A-207ENST00000481131 CSRNP3Q8WYN3 585 aa15.97■□□□□ 0.15
UPF3A-207ENST00000481131 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.94■□□□□ 0.148e-9■□□□□ 9.1
UPF3A-207ENST00000481131 SLC4A2P04920 1241 aa15.82■□□□□ 0.12
UPF3A-207ENST00000481131 ZBTB22O15209 634 aa15.74■□□□□ 0.11
UPF3A-207ENST00000481131 U3KPZ7 1027 aaPredicted RBP15.71■□□□□ 0.11
UPF3A-207ENST00000481131 FOXD4L1Q9NU39 408 aa15.47■□□□□ 0.07
UPF3A-207ENST00000481131 SPINK5Q9NQ38 1064 aaPredicted RBP15.46■□□□□ 0.07
UPF3A-207ENST00000481131 DSG3P32926 999 aa15.35■□□□□ 0.05
UPF3A-207ENST00000481131 CAPN15O75808 1086 aa15.33■□□□□ 0.04
UPF3A-207ENST00000481131 MYCNP04198 464 aaPredicted RBP15.26■□□□□ 0.03
UPF3A-207ENST00000481131 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.19■□□□□ 0.02
UPF3A-207ENST00000481131 HNRNPUL2Q1KMD3 747 aaKnown RBP15.19■□□□□ 0.02
UPF3A-207ENST00000481131 APLP2Q06481 763 aa15.14■□□□□ 0.01
UPF3A-207ENST00000481131 SAMD1Q6SPF0 538 aaPredicted RBP15.13■□□□□ 0.01
UPF3A-207ENST00000481131 TRHP20396 242 aaPredicted RBP15.11■□□□□ 0.01
UPF3A-207ENST00000481131 ZNF219Q9P2Y4 722 aaPredicted RBP15.1■□□□□ 0.01
UPF3A-207ENST00000481131 ATF5Q9Y2D1 282 aaPredicted RBP15.08■□□□□ 0
UPF3A-207ENST00000481131 ABCB7O75027 752 aa15□□□□□ -0.01
UPF3A-207ENST00000481131 ATXN8OSP0DMR3 200 aa14.87□□□□□ -0.03
UPF3A-207ENST00000481131 POLA2Q14181 598 aa14.79□□□□□ -0.04
UPF3A-207ENST00000481131 POTEHQ6S545 545 aa14.56□□□□□ -0.08
UPF3A-207ENST00000481131 RBM42Q9BTD8 480 aaKnown RBP14.54□□□□□ -0.08
UPF3A-207ENST00000481131 ZBTB12Q9Y330 459 aaPredicted RBP14.42□□□□□ -0.1
UPF3A-207ENST00000481131 MKRN4PQ13434 485 aaPredicted RBP14.37□□□□□ -0.11
UPF3A-207ENST00000481131 FKBP8Q14318 412 aa14.36□□□□□ -0.11
UPF3A-207ENST00000481131 OSCARQ8IYS5 282 aa14.34□□□□□ -0.11
UPF3A-207ENST00000481131 AKT1S1Q96B36 256 aa14.28□□□□□ -0.12
UPF3A-207ENST00000481131 CHRDL2Q6WN34 429 aa14.24□□□□□ -0.13
UPF3A-207ENST00000481131 FBLN2P98095 1184 aa14.21□□□□□ -0.13
UPF3A-207ENST00000481131 REM2Q8IYK8 340 aaPredicted RBP14.15□□□□□ -0.14
UPF3A-207ENST00000481131 SPDYE2BA6NHP3 402 aa14.03□□□□□ -0.16
UPF3A-207ENST00000481131 SPDYE6P0CI01 402 aa14.03□□□□□ -0.16
UPF3A-207ENST00000481131 SPDYE2Q495Y8 402 aa14.03□□□□□ -0.16
UPF3A-207ENST00000481131 PITPNM1O00562 1244 aa13.99□□□□□ -0.17
UPF3A-207ENST00000481131 PIP4P2Q8N4L2 257 aa13.95□□□□□ -0.18
UPF3A-207ENST00000481131 SSUH2Q9Y2M2 353 aa13.95□□□□□ -0.18
UPF3A-207ENST00000481131 ZNF692Q9BU19 519 aaPredicted RBP13.94□□□□□ -0.18
UPF3A-207ENST00000481131 RTN4Q9NQC3 1192 aaKnown RBP13.93□□□□□ -0.18
UPF3A-207ENST00000481131 FXR2P51116 673 aaKnown RBP eCLIP13.91□□□□□ -0.18
UPF3A-207ENST00000481131 SPDYE4A6NLX3 237 aa13.89□□□□□ -0.19
UPF3A-207ENST00000481131 AMER1Q5JTC6 1135 aaPredicted RBP13.86□□□□□ -0.19
UPF3A-207ENST00000481131 PABPN1Q86U42 306 aaKnown RBP eCLIP13.8□□□□□ -0.2
UPF3A-207ENST00000481131 PROM2Q8N271 834 aa13.79□□□□□ -0.2
UPF3A-207ENST00000481131 SPDYE1Q8NFV5 336 aaPredicted RBP13.74□□□□□ -0.21
UPF3A-207ENST00000481131 CLEC11AQ9Y240 323 aa13.7□□□□□ -0.22
UPF3A-207ENST00000481131 SP7Q8TDD2 431 aaPredicted RBP13.67□□□□□ -0.22
UPF3A-207ENST00000481131 FBXO3Q9UK99 471 aa13.64□□□□□ -0.23
UPF3A-207ENST00000481131 HAX1O00165 279 aa13.6□□□□□ -0.23
UPF3A-207ENST00000481131 PRKAR2AP13861 404 aaKnown RBP13.59□□□□□ -0.23
UPF3A-207ENST00000481131 EVX2Q03828 476 aa13.57□□□□□ -0.24
UPF3A-207ENST00000481131 VASPP50552 380 aaPredicted RBP13.53□□□□□ -0.24
UPF3A-207ENST00000481131 PRR29P0C7W0 189 aa13.49□□□□□ -0.25
UPF3A-207ENST00000481131 CHADLQ6NUI6 762 aa13.49□□□□□ -0.25
UPF3A-207ENST00000481131 C19orf67A6NJJ6 358 aa13.45□□□□□ -0.26
UPF3A-207ENST00000481131 IFNLR1Q8IU57 520 aaPredicted RBP13.41□□□□□ -0.26
UPF3A-207ENST00000481131 CREBZFQ9NS37 354 aa13.34□□□□□ -0.27
UPF3A-207ENST00000481131 STAG3Q9UJ98 1225 aa13.34□□□□□ -0.27
UPF3A-207ENST00000481131 SLC24A1O60721 1099 aa13.29□□□□□ -0.28
UPF3A-207ENST00000481131 FARP1Q9Y4F1 1045 aaPredicted RBP13.29□□□□□ -0.28
UPF3A-207ENST00000481131 GABBR2O75899 941 aa13.21□□□□□ -0.29
UPF3A-207ENST00000481131 MNX1P50219 401 aaPredicted RBP13.18□□□□□ -0.3
UPF3A-207ENST00000481131 CD44P16070 742 aaKnown RBP13.16□□□□□ -0.3
UPF3A-207ENST00000481131 PKD2Q13563 968 aa13.16□□□□□ -0.3
UPF3A-207ENST00000481131 KLHL34Q8N239 644 aa13.12□□□□□ -0.31
UPF3A-207ENST00000481131 PLCD3Q8N3E9 789 aa13.12□□□□□ -0.31
UPF3A-207ENST00000481131 SPOCK2Q92563 424 aa13.11□□□□□ -0.31
UPF3A-207ENST00000481131 MIER1Q8N108 512 aa13.09□□□□□ -0.31
UPF3A-207ENST00000481131 CLCN6P51797 869 aa13.01□□□□□ -0.33
UPF3A-207ENST00000481131 ZNF579Q8NAF0 562 aaKnown RBP13.01□□□□□ -0.33
UPF3A-207ENST00000481131 POTEIP0CG38 1075 aa13□□□□□ -0.33
UPF3A-207ENST00000481131 ZRANB1Q9UGI0 708 aa12.97□□□□□ -0.33
UPF3A-207ENST00000481131 NPM1P06748 294 aaKnown RBP eCLIP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 116 ms