RNA–Protein interactions for RNA: ENST00000476742.1

NPHP3-207, Transcript of nephrocystin 3, humanhuman

TSL 3

Gene NPHP3, Length 650 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-207ENST00000476742 PHF12Q96QT6 1004 aa10.96□□□□□ -0.65
NPHP3-207ENST00000476742 FOXD4L1Q9NU39 408 aa10.96□□□□□ -0.65
NPHP3-207ENST00000476742 MKRN4PQ13434 485 aaPredicted RBP10.91□□□□□ -0.66
NPHP3-207ENST00000476742 ST18O60284 1047 aa10.89□□□□□ -0.67
NPHP3-207ENST00000476742 ZBTB22O15209 634 aa10.87□□□□□ -0.67
NPHP3-207ENST00000476742 PAK3O75914 559 aaPredicted RBP10.87□□□□□ -0.67
NPHP3-207ENST00000476742 CSRNP3Q8WYN3 585 aa10.87□□□□□ -0.67
NPHP3-207ENST00000476742 POTEFA5A3E0 1075 aa10.81□□□□□ -0.68
NPHP3-207ENST00000476742 MS4A3Q96HJ5 214 aa10.78□□□□□ -0.68
NPHP3-207ENST00000476742 CREBZFQ9NS37 354 aa10.75□□□□□ -0.69
NPHP3-207ENST00000476742 ATN1P54259 1190 aaPredicted RBP10.74□□□□□ -0.69
NPHP3-207ENST00000476742 TMEM121BQ9BXQ6 578 aaPredicted RBP10.71□□□□□ -0.69
NPHP3-207ENST00000476742 ATXN8OSP0DMR3 200 aa10.65□□□□□ -0.7
NPHP3-207ENST00000476742 SLAIN1Q8ND83 568 aa10.63□□□□□ -0.71
NPHP3-207ENST00000476742 COLQQ9Y215 455 aaPredicted RBP10.57□□□□□ -0.72
NPHP3-207ENST00000476742 SEC24BO95487 1268 aa10.54□□□□□ -0.72
NPHP3-207ENST00000476742 KRTAP3-3Q9BYR6 98 aa10.54□□□□□ -0.72
NPHP3-207ENST00000476742 KRTAP3-2Q9BYR7 98 aa10.54□□□□□ -0.72
NPHP3-207ENST00000476742 BMP2KQ9NSY1 1161 aaPredicted RBP10.53□□□□□ -0.72
NPHP3-207ENST00000476742 NPM1P06748 294 aaKnown RBP eCLIP10.52□□□□□ -0.73
NPHP3-207ENST00000476742 MARVELD3Q96A59 401 aa10.52□□□□□ -0.73
NPHP3-207ENST00000476742 SNPHO15079 494 aa10.46□□□□□ -0.73
NPHP3-207ENST00000476742 TIE1P35590 1138 aa10.43□□□□□ -0.74
NPHP3-207ENST00000476742 STAG3Q9UJ98 1225 aa10.43□□□□□ -0.74
NPHP3-207ENST00000476742 MNX1P50219 401 aaPredicted RBP10.4□□□□□ -0.74
NPHP3-207ENST00000476742 IER5LQ5T953 404 aa10.4□□□□□ -0.74
NPHP3-207ENST00000476742 TRPC6Q9Y210 931 aa10.38□□□□□ -0.75
NPHP3-207ENST00000476742 EMP3P54852 163 aa10.35□□□□□ -0.75
NPHP3-207ENST00000476742 RNF166Q96A37 237 aaPredicted RBP10.35□□□□□ -0.75
NPHP3-207ENST00000476742 POTEB3A0JP26 581 aa10.34□□□□□ -0.75
NPHP3-207ENST00000476742 POTEBQ6S5H4 581 aa10.34□□□□□ -0.75
NPHP3-207ENST00000476742 KIF12Q96FN5 646 aa10.34□□□□□ -0.75
NPHP3-207ENST00000476742 HS3ST6Q96QI5 342 aa10.34□□□□□ -0.75
NPHP3-207ENST00000476742 TTLL13PA6NNM8 815 aa10.32□□□□□ -0.76
NPHP3-207ENST00000476742 CCDC61Q9Y6R9 512 aa10.32□□□□□ -0.76
NPHP3-207ENST00000476742 FAM205CA6NFA0 338 aa10.25□□□□□ -0.77
NPHP3-207ENST00000476742 TSPYL2Q9H2G4 693 aaPredicted RBP10.24□□□□□ -0.77
NPHP3-207ENST00000476742 TRIM35Q9UPQ4 493 aa10.24□□□□□ -0.77
NPHP3-207ENST00000476742 MAP3K13O43283 966 aa10.18□□□□□ -0.78
NPHP3-207ENST00000476742 PLCG2P16885 1265 aa10.17□□□□□ -0.78
NPHP3-207ENST00000476742 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.16□□□□□ -0.78
NPHP3-207ENST00000476742 MYT1LQ9UL68 1186 aa10.16□□□□□ -0.78
NPHP3-207ENST00000476742 IRX5P78411 483 aaPredicted RBP10.08□□□□□ -0.8
NPHP3-207ENST00000476742 SGIP1Q9BQI5 828 aa9.99□□□□□ -0.81
NPHP3-207ENST00000476742 OCEL1Q9H607 264 aa9.99□□□□□ -0.81
NPHP3-207ENST00000476742 PTGER2P43116 358 aa9.97□□□□□ -0.81
NPHP3-207ENST00000476742 PLA2G2EQ9NZK7 142 aa9.93□□□□□ -0.82
NPHP3-207ENST00000476742 TMEM106CQ9BVX2 250 aa9.9□□□□□ -0.82
NPHP3-207ENST00000476742 PCDHB13Q9Y5F0 798 aa9.88□□□□□ -0.83
NPHP3-207ENST00000476742 FKBP8Q14318 412 aa9.87□□□□□ -0.83
NPHP3-207ENST00000476742 C3orf67Q6ZVT6 689 aa9.87□□□□□ -0.83
NPHP3-207ENST00000476742 ERBB3P21860 1342 aa9.85□□□□□ -0.83
NPHP3-207ENST00000476742 SPDYE4A6NLX3 237 aa9.84□□□□□ -0.83
NPHP3-207ENST00000476742 HOXB1P14653 301 aaPredicted RBP9.83□□□□□ -0.84
NPHP3-207ENST00000476742 IFNL1Q8IU54 200 aa9.8□□□□□ -0.84
NPHP3-207ENST00000476742 RASEFQ8IZ41 740 aa9.79□□□□□ -0.84
NPHP3-207ENST00000476742 HOXB3P14651 431 aaPredicted RBP9.76□□□□□ -0.85
NPHP3-207ENST00000476742 ZNF687Q8N1G0 1237 aa9.74□□□□□ -0.85
NPHP3-207ENST00000476742 VARS2Q5ST30 1063 aaKnown RBP9.73□□□□□ -0.85
NPHP3-207ENST00000476742 L3MBTL3Q96JM7 780 aaPredicted RBP9.73□□□□□ -0.85
NPHP3-207ENST00000476742 IRX2Q9BZI1 471 aaPredicted RBP9.73□□□□□ -0.85
NPHP3-207ENST00000476742 PDCD7Q8N8D1 485 aaKnown RBP9.7□□□□□ -0.86
NPHP3-207ENST00000476742 ZNF710Q8N1W2 664 aa9.69□□□□□ -0.86
NPHP3-207ENST00000476742 HCSTQ9UBK5 93 aa9.67□□□□□ -0.86
NPHP3-207ENST00000476742 RGS20O76081 388 aa9.66□□□□□ -0.86
NPHP3-207ENST00000476742 ANKRD13DQ6ZTN6 518 aa9.63□□□□□ -0.87
NPHP3-207ENST00000476742 PROM2Q8N271 834 aa9.63□□□□□ -0.87
NPHP3-207ENST00000476742 DOK7Q18PE1 504 aa9.61□□□□□ -0.87
NPHP3-207ENST00000476742 FBXO3Q9UK99 471 aa9.57□□□□□ -0.88
NPHP3-207ENST00000476742 RIMBP2O15034 1052 aa9.53□□□□□ -0.88
NPHP3-207ENST00000476742 LSM11P83369 360 aaKnown RBP eCLIP9.52□□□□□ -0.89
NPHP3-207ENST00000476742 PLEKHG5O94827 1062 aa9.51□□□□□ -0.89
NPHP3-207ENST00000476742 ZSWIM6Q9HCJ5 1215 aa9.46□□□□□ -0.9
NPHP3-207ENST00000476742 MKRN3Q13064 507 aaKnown RBP9.42□□□□□ -0.9
NPHP3-207ENST00000476742 Q6ZNB5 142 aa9.41□□□□□ -0.9
NPHP3-207ENST00000476742 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.41□□□□□ -0.92e-6■■□□□ 13.8
NPHP3-207ENST00000476742 NUBP1P53384 320 aa9.39□□□□□ -0.91
NPHP3-207ENST00000476742 VASPP50552 380 aaPredicted RBP9.38□□□□□ -0.91
NPHP3-207ENST00000476742 GPR153Q6NV75 609 aa9.38□□□□□ -0.91
NPHP3-207ENST00000476742 MIER1Q8N108 512 aa9.38□□□□□ -0.91
NPHP3-207ENST00000476742 ILDR1Q86SU0 546 aaPredicted RBP9.37□□□□□ -0.91
NPHP3-207ENST00000476742 GOLGA2Q08379 1002 aa9.36□□□□□ -0.91
NPHP3-207ENST00000476742 IFFO2Q5TF58 517 aa9.36□□□□□ -0.91
NPHP3-207ENST00000476742 PLCD3Q8N3E9 789 aa9.36□□□□□ -0.91
NPHP3-207ENST00000476742 FAM212AQ96EL1 285 aa9.34□□□□□ -0.91
NPHP3-207ENST00000476742 BOLA1Q9Y3E2 137 aa9.33□□□□□ -0.92
NPHP3-207ENST00000476742 G3V3G9 751 aa9.32□□□□□ -0.92
NPHP3-207ENST00000476742 DCAF8Q5TAQ9 597 aa9.32□□□□□ -0.92
NPHP3-207ENST00000476742 PBX2P40425 430 aa9.31□□□□□ -0.92
NPHP3-207ENST00000476742 PCDHB8Q9UN66 801 aa9.31□□□□□ -0.92
NPHP3-207ENST00000476742 DPY19L2Q6NUT2 758 aa9.3□□□□□ -0.92
NPHP3-207ENST00000476742 ZBTB47Q9UFB7 747 aaPredicted RBP9.29□□□□□ -0.92
NPHP3-207ENST00000476742 A0A0G2JS52 829 aa9.28□□□□□ -0.92
NPHP3-207ENST00000476742 LOC100996750A0A140TA64 210 aa9.27□□□□□ -0.93
NPHP3-207ENST00000476742 ZNF316A6NFI3 1004 aaPredicted RBP9.27□□□□□ -0.93
NPHP3-207ENST00000476742 KLHL34Q8N239 644 aa9.27□□□□□ -0.93
NPHP3-207ENST00000476742 KRTAP4-6Q9BYQ5 205 aa9.27□□□□□ -0.93
NPHP3-207ENST00000476742 IFNLR1Q8IU57 520 aaPredicted RBP9.22□□□□□ -0.93
NPHP3-207ENST00000476742 POTEEQ6S8J3 1075 aa9.21□□□□□ -0.94
NPHP3-207ENST00000476742 LCE2BO14633 110 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms