RNA–Protein interactions for RNA: ENST00000466274.1

NCL-208, Transcript of nucleolin, humanhuman

TSL 2

Gene NCL, Length 671 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCL-208ENST00000466274 PLEKHG5O94827 1062 aa13.23□□□□□ -0.29
NCL-208ENST00000466274 PLCD3Q8N3E9 789 aa13.22□□□□□ -0.29
NCL-208ENST00000466274 LHX8Q68G74 356 aa13.2□□□□□ -0.3
NCL-208ENST00000466274 RASEFQ8IZ41 740 aa13.14□□□□□ -0.31
NCL-208ENST00000466274 CCDC61Q9Y6R9 512 aa13.14□□□□□ -0.31
NCL-208ENST00000466274 MS4A3Q96HJ5 214 aa13.13□□□□□ -0.31
NCL-208ENST00000466274 NACADO15069 1562 aa13.08□□□□□ -0.32
NCL-208ENST00000466274 KIF12Q96FN5 646 aa13.06□□□□□ -0.32
NCL-208ENST00000466274 PELP1Q8IZL8 1130 aaKnown RBP13.05□□□□□ -0.32
NCL-208ENST00000466274 NUBP1P53384 320 aa13.04□□□□□ -0.32
NCL-208ENST00000466274 ZBTB47Q9UFB7 747 aaPredicted RBP13.04□□□□□ -0.32
NCL-208ENST00000466274 DCAF8L2P0C7V8 631 aa13.03□□□□□ -0.32
NCL-208ENST00000466274 FBXO3Q9UK99 471 aa13.03□□□□□ -0.32
NCL-208ENST00000466274 MAP3K13O43283 966 aa13.01□□□□□ -0.33
NCL-208ENST00000466274 ATMINO43313 823 aaPredicted RBP12.98□□□□□ -0.33
NCL-208ENST00000466274 ASTLQ6HA08 431 aaPredicted RBP12.98□□□□□ -0.33
NCL-208ENST00000466274 TRPC6Q9Y210 931 aa12.96□□□□□ -0.33
NCL-208ENST00000466274 CECR2Q9BXF3 1484 aa12.95□□□□□ -0.34
NCL-208ENST00000466274 POTEB2H3BUK9 544 aa12.93□□□□□ -0.34
NCL-208ENST00000466274 VASPP50552 380 aaPredicted RBP12.91□□□□□ -0.34
NCL-208ENST00000466274 ATN1P54259 1190 aaPredicted RBP12.91□□□□□ -0.34
NCL-208ENST00000466274 FAM212AQ96EL1 285 aa12.9□□□□□ -0.34
NCL-208ENST00000466274 BMP2KQ9NSY1 1161 aaPredicted RBP12.89□□□□□ -0.35
NCL-208ENST00000466274 METRNQ9UJH8 293 aa12.88□□□□□ -0.35
NCL-208ENST00000466274 SLC39A7Q92504 469 aa12.87□□□□□ -0.35
NCL-208ENST00000466274 PCDHB13Q9Y5F0 798 aa12.87□□□□□ -0.35
NCL-208ENST00000466274 C7P10643 843 aa12.86□□□□□ -0.35
NCL-208ENST00000466274 DCAF8Q5TAQ9 597 aa12.86□□□□□ -0.35
NCL-208ENST00000466274 KLHL34Q8N239 644 aa12.86□□□□□ -0.35
NCL-208ENST00000466274 TIE1P35590 1138 aa12.83□□□□□ -0.36
NCL-208ENST00000466274 OTUD5Q96G74 571 aa12.83□□□□□ -0.36
NCL-208ENST00000466274 BICRAQ9NZM4 1560 aa12.82□□□□□ -0.36
NCL-208ENST00000466274 IFNL1Q8IU54 200 aa12.82□□□□□ -0.36
NCL-208ENST00000466274 SGIP1Q9BQI5 828 aa12.82□□□□□ -0.36
NCL-208ENST00000466274 TTLL13PA6NNM8 815 aa12.8□□□□□ -0.36
NCL-208ENST00000466274 PYGBP11216 843 aa12.79□□□□□ -0.36
NCL-208ENST00000466274 CC2D2AQ9P2K1 1620 aa12.78□□□□□ -0.36
NCL-208ENST00000466274 POTEJP0CG39 1038 aa12.77□□□□□ -0.37
NCL-208ENST00000466274 SHROOM4Q9ULL8 1493 aa12.77□□□□□ -0.37
NCL-208ENST00000466274 POTEFA5A3E0 1075 aa12.74□□□□□ -0.37
NCL-208ENST00000466274 MYO15BQ96JP2 1530 aa12.72□□□□□ -0.37
NCL-208ENST00000466274 TRIM35Q9UPQ4 493 aa12.72□□□□□ -0.37
NCL-208ENST00000466274 IFNLR1Q8IU57 520 aaPredicted RBP12.71□□□□□ -0.37
NCL-208ENST00000466274 TMEM106CQ9BVX2 250 aa12.71□□□□□ -0.37
NCL-208ENST00000466274 UNC13AQ9UPW8 1703 aa12.71□□□□□ -0.38
NCL-208ENST00000466274 PCDHB8Q9UN66 801 aa12.7□□□□□ -0.38
NCL-208ENST00000466274 COLQQ9Y215 455 aaPredicted RBP12.69□□□□□ -0.38
NCL-208ENST00000466274 GSE1Q14687 1217 aa12.68□□□□□ -0.38
NCL-208ENST00000466274 SEC24BO95487 1268 aa12.66□□□□□ -0.38
NCL-208ENST00000466274 SPOCK2Q92563 424 aa12.64□□□□□ -0.39
NCL-208ENST00000466274 MAMSTRQ6ZN01 415 aa12.63□□□□□ -0.39
NCL-208ENST00000466274 EIF4G1Q04637 1599 aaKnown RBP12.63□□□□□ -0.39
NCL-208ENST00000466274 IER5LQ5T953 404 aa12.62□□□□□ -0.39
NCL-208ENST00000466274 CUX2O14529 1486 aa12.6□□□□□ -0.39
NCL-208ENST00000466274 CHRM1P11229 460 aaPredicted RBP12.58□□□□□ -0.4
NCL-208ENST00000466274 SCUBE2Q9NQ36 999 aa12.58□□□□□ -0.4
NCL-208ENST00000466274 CIZ1Q9ULV3 898 aaPredicted RBP12.58□□□□□ -0.4
NCL-208ENST00000466274 ZNF467Q7Z7K2 595 aaPredicted RBP12.54□□□□□ -0.4
NCL-208ENST00000466274 IRX5P78411 483 aaPredicted RBP12.52□□□□□ -0.41
NCL-208ENST00000466274 PLCG2P16885 1265 aa12.51□□□□□ -0.41
NCL-208ENST00000466274 TRIM41Q8WV44 630 aa12.49□□□□□ -0.41
NCL-208ENST00000466274 PSEN1P49768 467 aa12.47□□□□□ -0.41
NCL-208ENST00000466274 OCEL1Q9H607 264 aa12.47□□□□□ -0.41
NCL-208ENST00000466274 FAM163AQ96GL9 167 aaPredicted RBP12.44□□□□□ -0.42
NCL-208ENST00000466274 ERCC6Q03468 1493 aa12.44□□□□□ -0.42
NCL-208ENST00000466274 POTEMA6NI47 508 aa12.41□□□□□ -0.42
NCL-208ENST00000466274 GOLGA2Q08379 1002 aa12.41□□□□□ -0.42
NCL-208ENST00000466274 MKRN3Q13064 507 aaKnown RBP12.4□□□□□ -0.42
NCL-208ENST00000466274 PDAP1Q13442 181 aaKnown RBP12.4□□□□□ -0.42
NCL-208ENST00000466274 LCE2DQ5TA82 110 aaPredicted RBP12.39□□□□□ -0.43
NCL-208ENST00000466274 POTEGQ6S5H5 508 aa12.39□□□□□ -0.43
NCL-208ENST00000466274 SCRIBQ14160 1630 aa12.39□□□□□ -0.43
NCL-208ENST00000466274 SLAIN1Q8ND83 568 aa12.38□□□□□ -0.43
NCL-208ENST00000466274 PDCD7Q8N8D1 485 aaKnown RBP12.36□□□□□ -0.43
NCL-208ENST00000466274 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.34□□□□□ -0.431e-16■□□□□ 11
NCL-208ENST00000466274 CABP2Q9NPB3 220 aa12.33□□□□□ -0.44
NCL-208ENST00000466274 DCAF1Q9Y4B6 1507 aa12.32□□□□□ -0.44
NCL-208ENST00000466274 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.28□□□□□ -0.44
NCL-208ENST00000466274 DPY19L2Q6NUT2 758 aa12.27□□□□□ -0.45
NCL-208ENST00000466274 PLSCR2Q9NRY7 297 aa12.26□□□□□ -0.45
NCL-208ENST00000466274 ILDR1Q86SU0 546 aaPredicted RBP12.25□□□□□ -0.45
NCL-208ENST00000466274 L3MBTL3Q96JM7 780 aaPredicted RBP12.25□□□□□ -0.45
NCL-208ENST00000466274 RNF25Q96BH1 459 aaPredicted RBP12.24□□□□□ -0.45
NCL-208ENST00000466274 ZCCHC6Q5VYS8 1495 aaKnown RBP12.22□□□□□ -0.45
NCL-208ENST00000466274 RIOK3O14730 519 aaKnown RBP12.22□□□□□ -0.45
NCL-208ENST00000466274 C3orf67Q6ZVT6 689 aa12.21□□□□□ -0.45
NCL-208ENST00000466274 EFCAB3Q8N7B9 438 aa12.21□□□□□ -0.45
NCL-208ENST00000466274 ST18O60284 1047 aa12.2□□□□□ -0.46
NCL-208ENST00000466274 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.16□□□□□ -0.46
NCL-208ENST00000466274 ZFP91Q96JP5 570 aaPredicted RBP12.16□□□□□ -0.46
NCL-208ENST00000466274 VGFO15240 615 aaPredicted RBP12.14□□□□□ -0.47
NCL-208ENST00000466274 PCDH10Q9P2E7 1040 aa12.14□□□□□ -0.47
NCL-208ENST00000466274 BOLA1Q9Y3E2 137 aa12.14□□□□□ -0.47
NCL-208ENST00000466274 SNPHO15079 494 aa12.12□□□□□ -0.47
NCL-208ENST00000466274 NCAPD3P42695 1498 aa12.12□□□□□ -0.47
NCL-208ENST00000466274 G3V3G9 751 aa12.1□□□□□ -0.47
NCL-208ENST00000466274 ECM2O94769 699 aaPredicted RBP12.07□□□□□ -0.48
NCL-208ENST00000466274 SOX12O15370 315 aa12.06□□□□□ -0.48
NCL-208ENST00000466274 CDAN1Q8IWY9 1227 aa12.06□□□□□ -0.48
NCL-208ENST00000466274 MARVELD3Q96A59 401 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms