RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 HNRNPUQ00839 825 aaKnown RBP eCLIP11.61□□□□□ -0.55
NIPBL-202ENST00000448238 WDR43Q15061 677 aaKnown RBP eCLIP11.59□□□□□ -0.55
NIPBL-202ENST00000448238 ESF1Q9H501 851 aaKnown RBP11.59□□□□□ -0.55
NIPBL-202ENST00000448238 DRC7Q8IY82 874 aa11.58□□□□□ -0.56
NIPBL-202ENST00000448238 TMC1Q8TDI8 760 aa11.58□□□□□ -0.56
NIPBL-202ENST00000448238 CLSTN1O94985 981 aa11.56□□□□□ -0.56
NIPBL-202ENST00000448238 RRP12Q5JTH9 1297 aaKnown RBP11.55□□□□□ -0.56
NIPBL-202ENST00000448238 FGD1P98174 961 aa11.54□□□□□ -0.56
NIPBL-202ENST00000448238 CHMP4BQ9H444 224 aaKnown RBP11.53□□□□□ -0.56
NIPBL-202ENST00000448238 ARID4BQ4LE39 1312 aaPredicted RBP11.53□□□□□ -0.56
NIPBL-202ENST00000448238 CFAP44Q96MT7 982 aa11.52□□□□□ -0.57
NIPBL-202ENST00000448238 CCDC34Q96HJ3 373 aa11.51□□□□□ -0.57
NIPBL-202ENST00000448238 STK11IPQ8N1F8 1099 aa11.51□□□□□ -0.57
NIPBL-202ENST00000448238 STAG3Q9UJ98 1225 aa11.49□□□□□ -0.57
NIPBL-202ENST00000448238 HSP90AB1P08238 724 aaKnown RBP11.48□□□□□ -0.57
NIPBL-202ENST00000448238 CEP89Q96ST8 783 aa11.48□□□□□ -0.57
NIPBL-202ENST00000448238 FAM9BQ8IZU0 186 aa11.48□□□□□ -0.57
NIPBL-202ENST00000448238 TPM4P67936 248 aa11.48□□□□□ -0.57
NIPBL-202ENST00000448238 APPP05067 770 aa11.47□□□□□ -0.57
NIPBL-202ENST00000448238 RTN4Q9NQC3 1192 aaKnown RBP11.46□□□□□ -0.57
NIPBL-202ENST00000448238 HMMRO75330 724 aa11.46□□□□□ -0.57
NIPBL-202ENST00000448238 GPS2Q13227 327 aa11.46□□□□□ -0.57
NIPBL-202ENST00000448238 GOLGA6L3A6NEY3 463 aa11.46□□□□□ -0.58
NIPBL-202ENST00000448238 HTATSF1O43719 755 aaKnown RBP11.45□□□□□ -0.58
NIPBL-202ENST00000448238 SYAP1Q96A49 352 aaPredicted RBP11.45□□□□□ -0.58
NIPBL-202ENST00000448238 TONSLQ96HA7 1378 aa11.44□□□□□ -0.58
NIPBL-202ENST00000448238 KCNJ4P48050 445 aa11.44□□□□□ -0.58
NIPBL-202ENST00000448238 GOLGA2Q08379 1002 aa11.43□□□□□ -0.58
NIPBL-202ENST00000448238 TPRNQ4KMQ1 711 aa11.43□□□□□ -0.58
NIPBL-202ENST00000448238 MCCP23508 829 aa11.43□□□□□ -0.58
NIPBL-202ENST00000448238 FTSJ3Q8IY81 847 aaKnown RBP11.42□□□□□ -0.58
NIPBL-202ENST00000448238 A0A0G2JS52 829 aa11.42□□□□□ -0.58
NIPBL-202ENST00000448238 GNL2Q13823 731 aaKnown RBP11.41□□□□□ -0.58
NIPBL-202ENST00000448238 CCDC70Q6NSX1 233 aa11.41□□□□□ -0.58
NIPBL-202ENST00000448238 NOM1Q5C9Z4 860 aaKnown RBP11.41□□□□□ -0.58
NIPBL-202ENST00000448238 KRI1Q8N9T8 703 aaKnown RBP11.4□□□□□ -0.58
NIPBL-202ENST00000448238 HSCBQ8IWL3 235 aa11.4□□□□□ -0.58
NIPBL-202ENST00000448238 SALL2Q9Y467 1007 aaPredicted RBP11.4□□□□□ -0.58
NIPBL-202ENST00000448238 LAS1LQ9Y4W2 734 aaKnown RBP11.4□□□□□ -0.58
NIPBL-202ENST00000448238 NOP58Q9Y2X3 529 aaKnown RBP11.39□□□□□ -0.59
NIPBL-202ENST00000448238 MS4A1P11836 297 aa11.39□□□□□ -0.59
NIPBL-202ENST00000448238 TPM3P06753 285 aa11.39□□□□□ -0.59
NIPBL-202ENST00000448238 HSP90B1P14625 803 aaKnown RBP11.39□□□□□ -0.59
NIPBL-202ENST00000448238 HSP90AA2PQ14568 343 aaPredicted RBP11.38□□□□□ -0.59
NIPBL-202ENST00000448238 NAP1L2Q9ULW6 460 aaPredicted RBP11.37□□□□□ -0.59
NIPBL-202ENST00000448238 NPHP1O15259 732 aa11.36□□□□□ -0.59
NIPBL-202ENST00000448238 GBP4Q96PP9 640 aa11.36□□□□□ -0.59
NIPBL-202ENST00000448238 TEX35Q5T0J7 233 aa11.36□□□□□ -0.59
NIPBL-202ENST00000448238 SCAF1Q9H7N4 1312 aaKnown RBP11.35□□□□□ -0.59
NIPBL-202ENST00000448238 EIF4G2P78344 907 aaKnown RBP eCLIP11.35□□□□□ -0.591e-6■■■■□ 23.6
NIPBL-202ENST00000448238 CCDC191Q8NCU4 936 aa11.34□□□□□ -0.59
NIPBL-202ENST00000448238 MRS2Q9HD23 443 aa11.34□□□□□ -0.59
NIPBL-202ENST00000448238 PHF14O94880 888 aa11.33□□□□□ -0.6
NIPBL-202ENST00000448238 CSPP1Q1MSJ5 1256 aa11.33□□□□□ -0.6
NIPBL-202ENST00000448238 LOC105371045A0A1W2PR82 267 aa11.33□□□□□ -0.6
NIPBL-202ENST00000448238 CDR1P51861 262 aa11.33□□□□□ -0.6
NIPBL-202ENST00000448238 TSR1Q2NL82 804 aaKnown RBP11.32□□□□□ -0.6
NIPBL-202ENST00000448238 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.32□□□□□ -0.6
NIPBL-202ENST00000448238 CALD1Q05682 793 aaKnown RBP11.31□□□□□ -0.6
NIPBL-202ENST00000448238 OS9Q13438 667 aaPredicted RBP11.31□□□□□ -0.6
NIPBL-202ENST00000448238 CFAP53Q96M91 514 aa11.31□□□□□ -0.6
NIPBL-202ENST00000448238 RSPH6AQ9H0K4 717 aa11.31□□□□□ -0.6
NIPBL-202ENST00000448238 NEFHP12036 1026 aa11.31□□□□□ -0.6
NIPBL-202ENST00000448238 PATL2C9JE40 543 aaKnown RBP11.29□□□□□ -0.6
NIPBL-202ENST00000448238 CHGAP10645 457 aaKnown RBP11.29□□□□□ -0.6
NIPBL-202ENST00000448238 MAP7D2Q96T17 732 aa11.29□□□□□ -0.6
NIPBL-202ENST00000448238 NEXNQ0ZGT2 675 aa11.29□□□□□ -0.6
NIPBL-202ENST00000448238 DCTN1Q14203 1278 aa11.28□□□□□ -0.6
NIPBL-202ENST00000448238 TAOK2Q9UL54 1235 aa11.28□□□□□ -0.6
NIPBL-202ENST00000448238 MEX3CQ5U5Q3 659 aaKnown RBP11.28□□□□□ -0.6
NIPBL-202ENST00000448238 ZNF771Q7L3S4 317 aaPredicted RBP11.27□□□□□ -0.6
NIPBL-202ENST00000448238 RDXP35241 583 aaKnown RBP11.27□□□□□ -0.61
NIPBL-202ENST00000448238 ARID3AQ99856 593 aa11.27□□□□□ -0.61
NIPBL-202ENST00000448238 KIAA1211Q6ZU35 1233 aa11.26□□□□□ -0.61
NIPBL-202ENST00000448238 DDX10Q13206 875 aaKnown RBP11.26□□□□□ -0.61
NIPBL-202ENST00000448238 DEKP35659 375 aaKnown RBP11.26□□□□□ -0.61
NIPBL-202ENST00000448238 TPM1P09493 284 aa11.25□□□□□ -0.61
NIPBL-202ENST00000448238 ISY1Q9ULR0 285 aaKnown RBP11.24□□□□□ -0.61
NIPBL-202ENST00000448238 TAF7LQ5H9L4 462 aa11.24□□□□□ -0.61
NIPBL-202ENST00000448238 ZRSR2Q15696 482 aaKnown RBP11.24□□□□□ -0.61
NIPBL-202ENST00000448238 CWC15Q9P013 229 aaKnown RBP11.24□□□□□ -0.61
NIPBL-202ENST00000448238 HAP1P54257 671 aaPredicted RBP11.23□□□□□ -0.61
NIPBL-202ENST00000448238 ACBD3Q9H3P7 528 aa11.23□□□□□ -0.61
NIPBL-202ENST00000448238 CDCA8Q53HL2 280 aa11.23□□□□□ -0.61
NIPBL-202ENST00000448238 AK7Q96M32 723 aa11.22□□□□□ -0.61
NIPBL-202ENST00000448238 TPM2P07951 284 aa11.22□□□□□ -0.61
NIPBL-202ENST00000448238 KIF3AQ9Y496 699 aa11.21□□□□□ -0.62
NIPBL-202ENST00000448238 PDE4CQ08493 712 aa11.21□□□□□ -0.62
NIPBL-202ENST00000448238 IPO7O95373 1038 aaKnown RBP11.2□□□□□ -0.62
NIPBL-202ENST00000448238 RUFY1Q96T51 708 aa11.2□□□□□ -0.62
NIPBL-202ENST00000448238 CAGE1Q8TC20 777 aa11.2□□□□□ -0.62
NIPBL-202ENST00000448238 DYDC1Q8WWB3 177 aa11.19□□□□□ -0.62
NIPBL-202ENST00000448238 INCENPQ9NQS7 918 aa11.19□□□□□ -0.62
NIPBL-202ENST00000448238 VSIG10Q8N0Z9 540 aa11.19□□□□□ -0.62
NIPBL-202ENST00000448238 C14orf37Q86TY3 774 aa11.19□□□□□ -0.62
NIPBL-202ENST00000448238 RASSF8Q8NHQ8 419 aa11.18□□□□□ -0.62
NIPBL-202ENST00000448238 MAPK8IP3Q9UPT6 1336 aa11.18□□□□□ -0.62
NIPBL-202ENST00000448238 CHMP4CQ96CF2 233 aa11.17□□□□□ -0.62
NIPBL-202ENST00000448238 PPP4R2Q9NY27 417 aa11.17□□□□□ -0.62
NIPBL-202ENST00000448238 MTERF4Q7Z6M4 381 aaKnown RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms