RNA–Protein interactions for RNA: ENST00000444237.2

SCN11A-202, Transcript of sodium voltage-gated channel alpha subunit 11, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SCN11A, Length 5,729 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11A-202ENST00000444237 USP35Q9P2H5 1018 aa6.88□□□□□ -1.31
SCN11A-202ENST00000444237 POLR3GLQ9BT43 218 aa6.88□□□□□ -1.31
SCN11A-202ENST00000444237 UPF2Q9HAU5 1272 aaKnown RBP6.87□□□□□ -1.31
SCN11A-202ENST00000444237 LAS1LQ9Y4W2 734 aaKnown RBP6.87□□□□□ -1.31
SCN11A-202ENST00000444237 PNNQ9H307 717 aaKnown RBP6.87□□□□□ -1.31
SCN11A-202ENST00000444237 DDX10Q13206 875 aaKnown RBP6.86□□□□□ -1.31
SCN11A-202ENST00000444237 IRX6P78412 446 aaPredicted RBP6.86□□□□□ -1.31
SCN11A-202ENST00000444237 SALL2Q9Y467 1007 aaPredicted RBP6.86□□□□□ -1.31
SCN11A-202ENST00000444237 ZNF326Q5BKZ1 582 aaKnown RBP6.85□□□□□ -1.31
SCN11A-202ENST00000444237 BECN1Q14457 450 aa6.85□□□□□ -1.31
SCN11A-202ENST00000444237 CECR2Q9BXF3 1484 aa6.84□□□□□ -1.31
SCN11A-202ENST00000444237 ARXQ96QS3 562 aa6.84□□□□□ -1.31
SCN11A-202ENST00000444237 BAZ1AQ9NRL2 1556 aaPredicted RBP6.84□□□□□ -1.31
SCN11A-202ENST00000444237 IPO9Q96P70 1041 aaKnown RBP6.82□□□□□ -1.32
SCN11A-202ENST00000444237 CNGB1Q14028 1251 aaPredicted RBP6.82□□□□□ -1.32
SCN11A-202ENST00000444237 A0A0U1RQG5 324 aaPredicted RBP6.8□□□□□ -1.32
SCN11A-202ENST00000444237 RSF1Q96T23 1441 aaPredicted RBP6.79□□□□□ -1.32
SCN11A-202ENST00000444237 SMARCA2P51531 1590 aa6.79□□□□□ -1.32
SCN11A-202ENST00000444237 FAM9BQ8IZU0 186 aa6.78□□□□□ -1.32
SCN11A-202ENST00000444237 TIMELESSQ9UNS1 1208 aa6.78□□□□□ -1.32
SCN11A-202ENST00000444237 CCER2I3L3R5 266 aa6.77□□□□□ -1.33
SCN11A-202ENST00000444237 GSE1Q14687 1217 aa6.77□□□□□ -1.33
SCN11A-202ENST00000444237 GOLGA6L22H0YM25 854 aa6.75□□□□□ -1.33
SCN11A-202ENST00000444237 MSNP26038 577 aaKnown RBP6.75□□□□□ -1.33
SCN11A-202ENST00000444237 CANXP27824 592 aaKnown RBP6.75□□□□□ -1.33
SCN11A-202ENST00000444237 MROH2BQ7Z745 1585 aa6.75□□□□□ -1.33
SCN11A-202ENST00000444237 NPM1P06748 294 aaKnown RBP eCLIP6.75□□□□□ -1.33
SCN11A-202ENST00000444237 B4GALNT3Q6L9W6 998 aa6.75□□□□□ -1.33
SCN11A-202ENST00000444237 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.75□□□□□ -1.33
SCN11A-202ENST00000444237 MRS2Q9HD23 443 aa6.74□□□□□ -1.33
SCN11A-202ENST00000444237 TONSLQ96HA7 1378 aa6.74□□□□□ -1.33
SCN11A-202ENST00000444237 DNTTIP2Q5QJE6 756 aaKnown RBP6.73□□□□□ -1.33
SCN11A-202ENST00000444237 FAM50AQ14320 339 aaKnown RBP6.73□□□□□ -1.33
SCN11A-202ENST00000444237 SMARCA4P51532 1647 aa6.73□□□□□ -1.33
SCN11A-202ENST00000444237 EIF4G1Q04637 1599 aaKnown RBP6.73□□□□□ -1.33
SCN11A-202ENST00000444237 IL27Q8NEV9 243 aa6.73□□□□□ -1.33
SCN11A-202ENST00000444237 ARID4BQ4LE39 1312 aaPredicted RBP6.72□□□□□ -1.33
SCN11A-202ENST00000444237 RRP9O43818 475 aaKnown RBP6.72□□□□□ -1.33
SCN11A-202ENST00000444237 WIZO95785 1651 aa6.72□□□□□ -1.33
SCN11A-202ENST00000444237 FAM43AQ8N2R8 423 aa6.72□□□□□ -1.33
SCN11A-202ENST00000444237 CHMP7Q8WUX9 453 aaPredicted RBP6.71□□□□□ -1.33
SCN11A-202ENST00000444237 TCERG1O14776 1098 aaKnown RBP6.71□□□□□ -1.33
SCN11A-202ENST00000444237 PTMSP20962 102 aa6.71□□□□□ -1.33
SCN11A-202ENST00000444237 PTMAP06454 111 aaKnown RBP6.71□□□□□ -1.34
SCN11A-202ENST00000444237 CC2D2AQ9P2K1 1620 aa6.71□□□□□ -1.34
SCN11A-202ENST00000444237 ARID3CA6NKF2 412 aa6.71□□□□□ -1.34
SCN11A-202ENST00000444237 PDE4CQ08493 712 aa6.71□□□□□ -1.34
SCN11A-202ENST00000444237 AMER1Q5JTC6 1135 aaPredicted RBP6.71□□□□□ -1.34
SCN11A-202ENST00000444237 GOLGA6L3A6NEY3 463 aa6.7□□□□□ -1.34
SCN11A-202ENST00000444237 HAP1P54257 671 aaPredicted RBP6.7□□□□□ -1.34
SCN11A-202ENST00000444237 MAP7D2Q96T17 732 aa6.7□□□□□ -1.34
SCN11A-202ENST00000444237 P3H3Q8IVL6 736 aa6.69□□□□□ -1.34
SCN11A-202ENST00000444237 PDS5BQ9NTI5 1447 aa6.69□□□□□ -1.34
SCN11A-202ENST00000444237 ATAD2BQ9ULI0 1458 aa6.69□□□□□ -1.34
SCN11A-202ENST00000444237 TNNT3P45378 269 aaPredicted RBP6.69□□□□□ -1.34
SCN11A-202ENST00000444237 PLEKHG5O94827 1062 aa6.68□□□□□ -1.34
SCN11A-202ENST00000444237 CHAF1AQ13111 956 aaPredicted RBP6.68□□□□□ -1.34
SCN11A-202ENST00000444237 PLPPR3Q6T4P5 718 aa6.68□□□□□ -1.34
SCN11A-202ENST00000444237 EEA1Q15075 1411 aa6.68□□□□□ -1.34
SCN11A-202ENST00000444237 MTERF4Q7Z6M4 381 aaKnown RBP6.67□□□□□ -1.34
SCN11A-202ENST00000444237 TMC1Q8TDI8 760 aa6.67□□□□□ -1.34
SCN11A-202ENST00000444237 UNC13AQ9UPW8 1703 aa6.67□□□□□ -1.34
SCN11A-202ENST00000444237 TPM2P07951 284 aa6.67□□□□□ -1.34
SCN11A-202ENST00000444237 ZMYND15Q9H091 742 aa6.67□□□□□ -1.34
SCN11A-202ENST00000444237 TOP2AP11388 1531 aaKnown RBP6.66□□□□□ -1.34
SCN11A-202ENST00000444237 MYH16Q9H6N6 1097 aa6.65□□□□□ -1.34
SCN11A-202ENST00000444237 CCDC88BA6NC98 1476 aa6.65□□□□□ -1.34
SCN11A-202ENST00000444237 BICRAQ9NZM4 1560 aa6.64□□□□□ -1.35
SCN11A-202ENST00000444237 DNAJC5BQ9UF47 199 aa6.64□□□□□ -1.35
SCN11A-202ENST00000444237 BRPF3Q9ULD4 1205 aa6.64□□□□□ -1.35
SCN11A-202ENST00000444237 CEP164Q9UPV0 1460 aa6.63□□□□□ -1.35
SCN11A-202ENST00000444237 WRNQ14191 1432 aaPredicted RBP eCLIP6.62□□□□□ -1.35
SCN11A-202ENST00000444237 ARID3AQ99856 593 aa6.62□□□□□ -1.35
SCN11A-202ENST00000444237 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.62□□□□□ -1.35
SCN11A-202ENST00000444237 CADPSQ9ULU8 1353 aa6.61□□□□□ -1.35
SCN11A-202ENST00000444237 MSH5O43196 834 aa6.61□□□□□ -1.35
SCN11A-202ENST00000444237 EIF4G2P78344 907 aaKnown RBP eCLIP6.61□□□□□ -1.35
SCN11A-202ENST00000444237 CEP162Q5TB80 1403 aa6.6□□□□□ -1.35
SCN11A-202ENST00000444237 APPP05067 770 aa6.6□□□□□ -1.35
SCN11A-202ENST00000444237 GBP4Q96PP9 640 aa6.6□□□□□ -1.35
SCN11A-202ENST00000444237 KIAA2012Q0VF49 1180 aa6.6□□□□□ -1.35
SCN11A-202ENST00000444237 MS4A1P11836 297 aa6.59□□□□□ -1.35
SCN11A-202ENST00000444237 FRAT1Q92837 279 aaPredicted RBP6.59□□□□□ -1.35
SCN11A-202ENST00000444237 FAM13BQ9NYF5 915 aa6.59□□□□□ -1.35
SCN11A-202ENST00000444237 TAF3Q5VWG9 929 aa6.59□□□□□ -1.36
SCN11A-202ENST00000444237 HSCBQ8IWL3 235 aa6.59□□□□□ -1.36
SCN11A-202ENST00000444237 FANCD2Q9BXW9 1451 aa6.58□□□□□ -1.36
SCN11A-202ENST00000444237 CSPP1Q1MSJ5 1256 aa6.58□□□□□ -1.36
SCN11A-202ENST00000444237 ZNF771Q7L3S4 317 aaPredicted RBP6.58□□□□□ -1.36
SCN11A-202ENST00000444237 PDIA4P13667 645 aaKnown RBP6.58□□□□□ -1.36
SCN11A-202ENST00000444237 NFKBIBQ15653 356 aa6.58□□□□□ -1.36
SCN11A-202ENST00000444237 HIRIP3Q9BW71 556 aaPredicted RBP6.58□□□□□ -1.36
SCN11A-202ENST00000444237 GZF1Q9H116 711 aaPredicted RBP6.58□□□□□ -1.36
SCN11A-202ENST00000444237 PDE4AP27815 886 aa6.57□□□□□ -1.36
SCN11A-202ENST00000444237 RGS3P49796 1198 aa6.57□□□□□ -1.36
SCN11A-202ENST00000444237 ESF1Q9H501 851 aaKnown RBP6.57□□□□□ -1.36
SCN11A-202ENST00000444237 DDX11L8A8MPP1 907 aa6.57□□□□□ -1.36
SCN11A-202ENST00000444237 NCAPD3P42695 1498 aa6.57□□□□□ -1.36
SCN11A-202ENST00000444237 OSCARQ8IYS5 282 aa6.57□□□□□ -1.36
SCN11A-202ENST00000444237 HSP90AB1P08238 724 aaKnown RBP6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms