RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 RAB3GAP2Q9H2M9 1393 aa17.22■□□□□ 0.35
CD44-209ENST00000433892 ATP1B4Q9UN42 357 aaPredicted RBP17.22■□□□□ 0.35
CD44-209ENST00000433892 FHAD1B1AJZ9 1412 aa17.2■□□□□ 0.34
CD44-209ENST00000433892 PHLDB1Q86UU1 1377 aa17.2■□□□□ 0.34
CD44-209ENST00000433892 DNMBPQ6XZF7 1577 aa17.2■□□□□ 0.34
CD44-209ENST00000433892 NESP48681 1621 aa17.19■□□□□ 0.34
CD44-209ENST00000433892 POLA1P09884 1462 aaPredicted RBP17.19■□□□□ 0.34
CD44-209ENST00000433892 TOPBP1Q92547 1522 aa17.18■□□□□ 0.34
CD44-209ENST00000433892 ABCA10Q8WWZ4 1543 aa17.18■□□□□ 0.34
CD44-209ENST00000433892 FAM50AQ14320 339 aaKnown RBP17.17■□□□□ 0.34
CD44-209ENST00000433892 PCF11O94913 1555 aaKnown RBP17.17■□□□□ 0.34
CD44-209ENST00000433892 FHOD3Q2V2M9 1422 aa17.16■□□□□ 0.34
CD44-209ENST00000433892 SETD5Q9C0A6 1442 aa17.14■□□□□ 0.34
CD44-209ENST00000433892 MAPKBP1O60336 1514 aa17.14■□□□□ 0.33
CD44-209ENST00000433892 CFAP43Q8NDM7 1665 aa17.12■□□□□ 0.33
CD44-209ENST00000433892 FYCO1Q9BQS8 1478 aa17.08■□□□□ 0.33
CD44-209ENST00000433892 EFCAB5A4FU69 1503 aa17.08■□□□□ 0.32
CD44-209ENST00000433892 CUL7Q14999 1698 aa17.07■□□□□ 0.32
CD44-209ENST00000433892 CASKIN1Q8WXD9 1431 aa17.07■□□□□ 0.32
CD44-209ENST00000433892 SIN3AQ96ST3 1273 aa17.05■□□□□ 0.32
CD44-209ENST00000433892 URB2Q14146 1524 aaKnown RBP17.05■□□□□ 0.32
CD44-209ENST00000433892 CTTNBP2Q8WZ74 1663 aa17.04■□□□□ 0.32
CD44-209ENST00000433892 AQRO60306 1485 aaKnown RBP eCLIP17.03■□□□□ 0.32
CD44-209ENST00000433892 TDRD9Q8NDG6 1382 aaKnown RBP17.03■□□□□ 0.32
CD44-209ENST00000433892 LAMC3Q9Y6N6 1575 aa17.01■□□□□ 0.31
CD44-209ENST00000433892 FMN1Q68DA7 1419 aa17■□□□□ 0.31
CD44-209ENST00000433892 WDR97A6NE52 1622 aa16.98■□□□□ 0.31
CD44-209ENST00000433892 SNAPC4Q5SXM2 1469 aa16.98■□□□□ 0.31
CD44-209ENST00000433892 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.97■□□□□ 0.31
CD44-209ENST00000433892 DNAJC5BQ9UF47 199 aa16.96■□□□□ 0.31
CD44-209ENST00000433892 GAPVD1Q14C86 1478 aa16.96■□□□□ 0.31
CD44-209ENST00000433892 MTUS2Q5JR59 1369 aa16.96■□□□□ 0.31
CD44-209ENST00000433892 FGD6Q6ZV73 1430 aa16.95■□□□□ 0.3
CD44-209ENST00000433892 ABCA5Q8WWZ7 1642 aa16.95■□□□□ 0.3
CD44-209ENST00000433892 PDS5BQ9NTI5 1447 aa16.93■□□□□ 0.3
CD44-209ENST00000433892 KCNH8Q96L42 1107 aa16.92■□□□□ 0.3
CD44-209ENST00000433892 SAMD9Q5K651 1589 aa16.91■□□□□ 0.3
CD44-209ENST00000433892 TIMELESSQ9UNS1 1208 aa16.91■□□□□ 0.3
CD44-209ENST00000433892 DDX10Q13206 875 aaKnown RBP16.9■□□□□ 0.3
CD44-209ENST00000433892 PTPRKQ15262 1439 aa16.88■□□□□ 0.29
CD44-209ENST00000433892 LRRIQ1Q96JM4 1722 aa16.88■□□□□ 0.29
CD44-209ENST00000433892 PPP1R15AO75807 674 aaPredicted RBP16.87■□□□□ 0.29
CD44-209ENST00000433892 GRIN2BQ13224 1484 aa16.87■□□□□ 0.29
CD44-209ENST00000433892 HIRIP3Q9BW71 556 aaPredicted RBP16.87■□□□□ 0.29
CD44-209ENST00000433892 NCOA2Q15596 1464 aa16.86■□□□□ 0.29
CD44-209ENST00000433892 CCDC18Q5T9S5 1454 aa16.86■□□□□ 0.29
CD44-209ENST00000433892 KIF21AQ7Z4S6 1674 aa16.85■□□□□ 0.29
CD44-209ENST00000433892 HFM1A2PYH4 1435 aa16.84■□□□□ 0.29
CD44-209ENST00000433892 SUPT16HQ9Y5B9 1047 aaKnown RBP16.84■□□□□ 0.29
CD44-209ENST00000433892 MYOM3Q5VTT5 1437 aa16.84■□□□□ 0.29
CD44-209ENST00000433892 TARBP1Q13395 1621 aaKnown RBP16.82■□□□□ 0.28
CD44-209ENST00000433892 UACAQ9BZF9 1416 aa16.81■□□□□ 0.28
CD44-209ENST00000433892 TONSLQ96HA7 1378 aa16.81■□□□□ 0.28
CD44-209ENST00000433892 PTPN23Q9H3S7 1636 aa16.81■□□□□ 0.28
CD44-209ENST00000433892 THOC2Q8NI27 1593 aaKnown RBP16.8■□□□□ 0.28
CD44-209ENST00000433892 NAIPQ13075 1403 aa16.8■□□□□ 0.28
CD44-209ENST00000433892 SUPT6HQ7KZ85 1726 aaKnown RBP16.8■□□□□ 0.28
CD44-209ENST00000433892 EHBP1L1Q8N3D4 1523 aa16.79■□□□□ 0.28
CD44-209ENST00000433892 MAGI3Q5TCQ9 1506 aa16.77■□□□□ 0.28
CD44-209ENST00000433892 UGGT2Q9NYU1 1516 aa16.76■□□□□ 0.27
CD44-209ENST00000433892 CHIC2Q9UKJ5 165 aa16.75■□□□□ 0.27
CD44-209ENST00000433892 RRP7BPQ9NSQ0 103 aa16.74■□□□□ 0.27
CD44-209ENST00000433892 ARHGEF11O15085 1522 aa16.74■□□□□ 0.27
CD44-209ENST00000433892 ARID3CA6NKF2 412 aa16.72■□□□□ 0.27
CD44-209ENST00000433892 PBRM1Q86U86 1689 aa16.72■□□□□ 0.27
CD44-209ENST00000433892 IQGAP2Q13576 1575 aa16.71■□□□□ 0.27
CD44-209ENST00000433892 HECW1Q76N89 1606 aa16.7■□□□□ 0.26
CD44-209ENST00000433892 ANP32CO43423 234 aa16.7■□□□□ 0.26
CD44-209ENST00000433892 EPRSP07814 1512 aaKnown RBP16.69■□□□□ 0.26
CD44-209ENST00000433892 ADAMTS12P58397 1594 aa16.68■□□□□ 0.26
CD44-209ENST00000433892 CDK13Q14004 1512 aaKnown RBP16.68■□□□□ 0.26
CD44-209ENST00000433892 TCOF1Q13428 1488 aaKnown RBP16.67■□□□□ 0.26
CD44-209ENST00000433892 TRIM52Q96A61 297 aa16.67■□□□□ 0.26
CD44-209ENST00000433892 CCER2I3L3R5 266 aa16.66■□□□□ 0.26
CD44-209ENST00000433892 MRC2Q9UBG0 1479 aa16.66■□□□□ 0.26
CD44-209ENST00000433892 KDM5BQ9UGL1 1544 aa16.64■□□□□ 0.25
CD44-209ENST00000433892 WDR62O43379 1518 aa16.63■□□□□ 0.25
CD44-209ENST00000433892 KDM6BO15054 1643 aa16.62■□□□□ 0.25
CD44-209ENST00000433892 DENND4BO75064 1496 aaPredicted RBP16.62■□□□□ 0.25
CD44-209ENST00000433892 MIA2Q96PC5 1412 aa16.62■□□□□ 0.25
CD44-209ENST00000433892 ZNF608Q9ULD9 1512 aaPredicted RBP16.62■□□□□ 0.25
CD44-209ENST00000433892 GCC2Q8IWJ2 1684 aa16.61■□□□□ 0.25
CD44-209ENST00000433892 AKNAQ7Z591 1439 aa16.59■□□□□ 0.25
CD44-209ENST00000433892 MPHOSPH9Q99550 1183 aa16.59■□□□□ 0.25
CD44-209ENST00000433892 FKBP8Q14318 412 aa16.58■□□□□ 0.25
CD44-209ENST00000433892 BCANQ96GW7 911 aa16.58■□□□□ 0.25
CD44-209ENST00000433892 FOXD1Q16676 465 aa16.57■□□□□ 0.24
CD44-209ENST00000433892 IFT140Q96RY7 1462 aa16.56■□□□□ 0.24
CD44-209ENST00000433892 HSPA5P11021 654 aaKnown RBP16.56■□□□□ 0.24
CD44-209ENST00000433892 DISP1Q96F81 1524 aa16.55■□□□□ 0.24
CD44-209ENST00000433892 KIAA0586Q9BVV6 1533 aa16.55■□□□□ 0.24
CD44-209ENST00000433892 ZNF644Q9H582 1327 aaPredicted RBP16.54■□□□□ 0.24
CD44-209ENST00000433892 TSHZ2Q9NRE2 1034 aa16.54■□□□□ 0.24
CD44-209ENST00000433892 WASHC2AQ641Q2 1341 aa16.53■□□□□ 0.24
CD44-209ENST00000433892 L3MBTL2Q969R5 705 aa16.53■□□□□ 0.24
CD44-209ENST00000433892 KIAA0556O60303 1618 aa16.53■□□□□ 0.24
CD44-209ENST00000433892 DAPK1P53355 1430 aa16.52■□□□□ 0.24
CD44-209ENST00000433892 NUP153P49790 1475 aaKnown RBP16.52■□□□□ 0.24
CD44-209ENST00000433892 EIF4G2P78344 907 aaKnown RBP eCLIP16.51■□□□□ 0.23
CD44-209ENST00000433892 ABCC5O15440 1437 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms