RNA–Protein interactions for RNA: ENST00000429017.2

HOXD8-202, Transcript of homeobox D8, humanhuman

TSL 2 BASIC

Gene HOXD8, Length 1,608 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD8-202ENST00000429017 ATAD2BQ9ULI0 1458 aa13.04□□□□□ -0.32
HOXD8-202ENST00000429017 DCBLD2Q96PD2 775 aa13.03□□□□□ -0.32
HOXD8-202ENST00000429017 ZRANB1Q9UGI0 708 aa13.02□□□□□ -0.32
HOXD8-202ENST00000429017 SMARCA4P51532 1647 aa13□□□□□ -0.33
HOXD8-202ENST00000429017 GALR2O43603 387 aaPredicted RBP12.99□□□□□ -0.33
HOXD8-202ENST00000429017 CUX2O14529 1486 aa12.99□□□□□ -0.33
HOXD8-202ENST00000429017 ERCC6Q03468 1493 aa12.97□□□□□ -0.33
HOXD8-202ENST00000429017 HMGXB3Q12766 1538 aa12.96□□□□□ -0.33
HOXD8-202ENST00000429017 STAG3Q9UJ98 1225 aa12.96□□□□□ -0.33
HOXD8-202ENST00000429017 SMARCA2P51531 1590 aa12.96□□□□□ -0.34
HOXD8-202ENST00000429017 NESP48681 1621 aa12.95□□□□□ -0.34
HOXD8-202ENST00000429017 POTEB2H3BUK9 544 aa12.92□□□□□ -0.34
HOXD8-202ENST00000429017 OTUD5Q96G74 571 aa12.92□□□□□ -0.34
HOXD8-202ENST00000429017 BAZ1AQ9NRL2 1556 aaPredicted RBP12.89□□□□□ -0.35
HOXD8-202ENST00000429017 MNX1P50219 401 aaPredicted RBP12.89□□□□□ -0.35
HOXD8-202ENST00000429017 BAZ1BQ9UIG0 1483 aaKnown RBP12.88□□□□□ -0.35
HOXD8-202ENST00000429017 PEG3Q9GZU2 1588 aa12.87□□□□□ -0.35
HOXD8-202ENST00000429017 PHF12Q96QT6 1004 aa12.85□□□□□ -0.35
HOXD8-202ENST00000429017 MROH2BQ7Z745 1585 aa12.85□□□□□ -0.35
HOXD8-202ENST00000429017 SPDYE4A6NLX3 237 aa12.84□□□□□ -0.35
HOXD8-202ENST00000429017 THOC2Q8NI27 1593 aaKnown RBP12.82□□□□□ -0.36
HOXD8-202ENST00000429017 PELP1Q8IZL8 1130 aaKnown RBP12.81□□□□□ -0.36
HOXD8-202ENST00000429017 PLSCR2Q9NRY7 297 aa12.8□□□□□ -0.36
HOXD8-202ENST00000429017 LAMC3Q9Y6N6 1575 aa12.78□□□□□ -0.36
HOXD8-202ENST00000429017 PAK3O75914 559 aaPredicted RBP12.76□□□□□ -0.37
HOXD8-202ENST00000429017 KIF21AQ7Z4S6 1674 aa12.75□□□□□ -0.37
HOXD8-202ENST00000429017 NPM1P06748 294 aaKnown RBP eCLIP12.73□□□□□ -0.37
HOXD8-202ENST00000429017 ASTLQ6HA08 431 aaPredicted RBP12.73□□□□□ -0.37
HOXD8-202ENST00000429017 MS4A3Q96HJ5 214 aa12.7□□□□□ -0.38
HOXD8-202ENST00000429017 PDS5BQ9NTI5 1447 aa12.69□□□□□ -0.38
HOXD8-202ENST00000429017 POTEJP0CG39 1038 aa12.69□□□□□ -0.38
HOXD8-202ENST00000429017 WIZO95785 1651 aa12.68□□□□□ -0.38
HOXD8-202ENST00000429017 CADPSQ9ULU8 1353 aa12.67□□□□□ -0.38
HOXD8-202ENST00000429017 POTEMA6NI47 508 aa12.67□□□□□ -0.38
HOXD8-202ENST00000429017 ATMINO43313 823 aaPredicted RBP12.67□□□□□ -0.38
HOXD8-202ENST00000429017 METRNQ9UJH8 293 aa12.65□□□□□ -0.38
HOXD8-202ENST00000429017 PROM2Q8N271 834 aa12.64□□□□□ -0.39
HOXD8-202ENST00000429017 POTEGQ6S5H5 508 aa12.62□□□□□ -0.39
HOXD8-202ENST00000429017 MRC2Q9UBG0 1479 aa12.62□□□□□ -0.39
HOXD8-202ENST00000429017 SLC39A7Q92504 469 aa12.61□□□□□ -0.39
HOXD8-202ENST00000429017 C7P10643 843 aa12.6□□□□□ -0.39
HOXD8-202ENST00000429017 WDR62O43379 1518 aa12.6□□□□□ -0.39
HOXD8-202ENST00000429017 CCDC61Q9Y6R9 512 aa12.58□□□□□ -0.4
HOXD8-202ENST00000429017 LCE2DQ5TA82 110 aaPredicted RBP12.57□□□□□ -0.4
HOXD8-202ENST00000429017 EHMT2Q96KQ7 1210 aa12.55□□□□□ -0.4
HOXD8-202ENST00000429017 CEP164Q9UPV0 1460 aa12.54□□□□□ -0.4
HOXD8-202ENST00000429017 RSF1Q96T23 1441 aaPredicted RBP12.54□□□□□ -0.4
HOXD8-202ENST00000429017 FANCD2Q9BXW9 1451 aa12.53□□□□□ -0.4
HOXD8-202ENST00000429017 ATN1P54259 1190 aaPredicted RBP12.52□□□□□ -0.4
HOXD8-202ENST00000429017 CFTRP13569 1480 aa12.52□□□□□ -0.41
HOXD8-202ENST00000429017 POTEFA5A3E0 1075 aa12.51□□□□□ -0.41
HOXD8-202ENST00000429017 KIF12Q96FN5 646 aa12.51□□□□□ -0.41
HOXD8-202ENST00000429017 TRIM41Q8WV44 630 aa12.5□□□□□ -0.41
HOXD8-202ENST00000429017 TSPYL2Q9H2G4 693 aaPredicted RBP12.49□□□□□ -0.41
HOXD8-202ENST00000429017 PCDH10Q9P2E7 1040 aa12.49□□□□□ -0.41
HOXD8-202ENST00000429017 TOP2AP11388 1531 aaKnown RBP12.49□□□□□ -0.41
HOXD8-202ENST00000429017 MAMSTRQ6ZN01 415 aa12.48□□□□□ -0.41
HOXD8-202ENST00000429017 URB2Q14146 1524 aaKnown RBP12.47□□□□□ -0.41
HOXD8-202ENST00000429017 TRPC6Q9Y210 931 aa12.46□□□□□ -0.41
HOXD8-202ENST00000429017 BMP2KQ9NSY1 1161 aaPredicted RBP12.45□□□□□ -0.42
HOXD8-202ENST00000429017 MAP3K13O43283 966 aa12.38□□□□□ -0.43
HOXD8-202ENST00000429017 TIE1P35590 1138 aa12.38□□□□□ -0.43
HOXD8-202ENST00000429017 SCUBE2Q9NQ36 999 aa12.37□□□□□ -0.43
HOXD8-202ENST00000429017 CCDC88BA6NC98 1476 aa12.37□□□□□ -0.43
HOXD8-202ENST00000429017 RASEFQ8IZ41 740 aa12.37□□□□□ -0.43
HOXD8-202ENST00000429017 PRDM2Q13029 1718 aa12.36□□□□□ -0.43
HOXD8-202ENST00000429017 ZNF608Q9ULD9 1512 aaPredicted RBP12.34□□□□□ -0.43
HOXD8-202ENST00000429017 COLQQ9Y215 455 aaPredicted RBP12.33□□□□□ -0.44
HOXD8-202ENST00000429017 FAM163AQ96GL9 167 aaPredicted RBP12.32□□□□□ -0.44
HOXD8-202ENST00000429017 TTLL13PA6NNM8 815 aa12.31□□□□□ -0.44
HOXD8-202ENST00000429017 TOPBP1Q92547 1522 aa12.3□□□□□ -0.44
HOXD8-202ENST00000429017 IFT140Q96RY7 1462 aa12.3□□□□□ -0.44
HOXD8-202ENST00000429017 RIMBP3CA6NJZ7 1639 aa12.26□□□□□ -0.45
HOXD8-202ENST00000429017 RIMBP3BA6NNM3 1639 aa12.26□□□□□ -0.45
HOXD8-202ENST00000429017 RIMBP3Q9UFD9 1639 aa12.26□□□□□ -0.45
HOXD8-202ENST00000429017 SGIP1Q9BQI5 828 aa12.24□□□□□ -0.45
HOXD8-202ENST00000429017 MIER1Q8N108 512 aa12.23□□□□□ -0.45
HOXD8-202ENST00000429017 EIF4G3O43432 1585 aaKnown RBP12.23□□□□□ -0.45
HOXD8-202ENST00000429017 DNMBPQ6XZF7 1577 aa12.23□□□□□ -0.45
HOXD8-202ENST00000429017 IER5LQ5T953 404 aa12.22□□□□□ -0.45
HOXD8-202ENST00000429017 ARHGEF11O15085 1522 aa12.21□□□□□ -0.46
HOXD8-202ENST00000429017 TARBP1Q13395 1621 aaKnown RBP12.21□□□□□ -0.46
HOXD8-202ENST00000429017 ABCC8Q09428 1581 aa12.2□□□□□ -0.46
HOXD8-202ENST00000429017 TRIM35Q9UPQ4 493 aa12.2□□□□□ -0.46
HOXD8-202ENST00000429017 AQRO60306 1485 aaKnown RBP eCLIP12.19□□□□□ -0.46
HOXD8-202ENST00000429017 PLEKHG5O94827 1062 aa12.19□□□□□ -0.46
HOXD8-202ENST00000429017 NUBP1P53384 320 aa12.19□□□□□ -0.46
HOXD8-202ENST00000429017 SEC24BO95487 1268 aa12.17□□□□□ -0.46
HOXD8-202ENST00000429017 POLA1P09884 1462 aaPredicted RBP12.17□□□□□ -0.46
HOXD8-202ENST00000429017 PCDHB13Q9Y5F0 798 aa12.16□□□□□ -0.46
HOXD8-202ENST00000429017 CHD1O14646 1710 aa12.16□□□□□ -0.46
HOXD8-202ENST00000429017 RAD54L2Q9Y4B4 1467 aa12.15□□□□□ -0.46
HOXD8-202ENST00000429017 IFNL1Q8IU54 200 aa12.13□□□□□ -0.47
HOXD8-202ENST00000429017 CYB5RLQ6IPT4 315 aa12.12□□□□□ -0.47
HOXD8-202ENST00000429017 CDAN1Q8IWY9 1227 aa12.12□□□□□ -0.47
HOXD8-202ENST00000429017 TDRD9Q8NDG6 1382 aaKnown RBP12.11□□□□□ -0.47
HOXD8-202ENST00000429017 ARAP1Q96P48 1450 aa12.11□□□□□ -0.47
HOXD8-202ENST00000429017 SOGA1O94964 1423 aa12.1□□□□□ -0.47
HOXD8-202ENST00000429017 ST18O60284 1047 aa12.08□□□□□ -0.48
HOXD8-202ENST00000429017 FGD5Q6ZNL6 1462 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms