RNA–Protein interactions for RNA: ENST00000429017.2

HOXD8-202, Transcript of homeobox D8, humanhuman

TSL 2 BASIC

Gene HOXD8, Length 1,608 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD8-202ENST00000429017 AEBP2Q6ZN18 517 aaPredicted RBP26.29■■□□□ 1.8
HOXD8-202ENST00000429017 CHIC1Q5VXU3 224 aa24.53■■□□□ 1.52
HOXD8-202ENST00000429017 SENP3Q9H4L4 574 aaPredicted RBP22.38■■□□□ 1.17
HOXD8-202ENST00000429017 PHF23Q9BUL5 403 aaPredicted RBP22.05■■□□□ 1.12
HOXD8-202ENST00000429017 FOXD1Q16676 465 aa20.96■□□□□ 0.95
HOXD8-202ENST00000429017 POTEDQ86YR6 584 aa19.96■□□□□ 0.79
HOXD8-202ENST00000429017 MSH5O43196 834 aa19.7■□□□□ 0.74
HOXD8-202ENST00000429017 PIAS4Q8N2W9 510 aaPredicted RBP19.4■□□□□ 0.7
HOXD8-202ENST00000429017 PLPPR3Q6T4P5 718 aa19.35■□□□□ 0.69
HOXD8-202ENST00000429017 PPP6R1Q9UPN7 881 aa19.33■□□□□ 0.68
HOXD8-202ENST00000429017 ADRA2BP18089 450 aa19.17■□□□□ 0.66
HOXD8-202ENST00000429017 MAPK8IP2Q13387 824 aaPredicted RBP17.75■□□□□ 0.43
HOXD8-202ENST00000429017 DMRT2Q9Y5R5 561 aa17.73■□□□□ 0.43
HOXD8-202ENST00000429017 SCAF1Q9H7N4 1312 aaKnown RBP17.44■□□□□ 0.38
HOXD8-202ENST00000429017 CACNB1Q02641 598 aaPredicted RBP17.08■□□□□ 0.32
HOXD8-202ENST00000429017 HOXD11P31277 338 aaPredicted RBP16.96■□□□□ 0.3
HOXD8-202ENST00000429017 PPP4R3CPQ6ZMV5 832 aa16.92■□□□□ 0.3
HOXD8-202ENST00000429017 RNF39Q9H2S5 420 aa16.85■□□□□ 0.29
HOXD8-202ENST00000429017 DCAF8L1A6NGE4 600 aa16.82■□□□□ 0.28
HOXD8-202ENST00000429017 CNKSR2Q8WXI2 1034 aa16.7■□□□□ 0.26
HOXD8-202ENST00000429017 RNF216Q9NWF9 866 aaPredicted RBP16.67■□□□□ 0.26
HOXD8-202ENST00000429017 NISCHQ9Y2I1 1504 aa16.64■□□□□ 0.25
HOXD8-202ENST00000429017 C1QBPQ07021 282 aaKnown RBP16.52■□□□□ 0.24
HOXD8-202ENST00000429017 DNAJC5BQ9UF47 199 aa16.48■□□□□ 0.23
HOXD8-202ENST00000429017 NCBP3Q53F19 620 aaKnown RBP16.07■□□□□ 0.16
HOXD8-202ENST00000429017 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.99■□□□□ 0.15
HOXD8-202ENST00000429017 NPM3O75607 178 aaKnown RBP15.95■□□□□ 0.14
HOXD8-202ENST00000429017 U3KPZ7 1027 aaPredicted RBP15.75■□□□□ 0.11
HOXD8-202ENST00000429017 DSG3P32926 999 aa15.62■□□□□ 0.09
HOXD8-202ENST00000429017 SPINK5Q9NQ38 1064 aaPredicted RBP15.61■□□□□ 0.09
HOXD8-202ENST00000429017 POTEHQ6S545 545 aa15.53■□□□□ 0.08
HOXD8-202ENST00000429017 CAPN15O75808 1086 aa15.49■□□□□ 0.07
HOXD8-202ENST00000429017 SLC4A2P04920 1241 aa15.39■□□□□ 0.05
HOXD8-202ENST00000429017 KCNA4P22459 653 aa15.28■□□□□ 0.04
HOXD8-202ENST00000429017 TRHP20396 242 aaPredicted RBP15.15■□□□□ 0.02
HOXD8-202ENST00000429017 ZNF219Q9P2Y4 722 aaPredicted RBP15.15■□□□□ 0.02
HOXD8-202ENST00000429017 ABCB7O75027 752 aa15.14■□□□□ 0.01
HOXD8-202ENST00000429017 APLP2Q06481 763 aa15.1■□□□□ 0.01
HOXD8-202ENST00000429017 ABCC9O60706 1549 aa15.08■□□□□ 0
HOXD8-202ENST00000429017 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.04■□□□□ -0
HOXD8-202ENST00000429017 HNRNPUL2Q1KMD3 747 aaKnown RBP15.04■□□□□ -0
HOXD8-202ENST00000429017 SAMD1Q6SPF0 538 aaPredicted RBP14.96□□□□□ -0.01
HOXD8-202ENST00000429017 CCDC180Q9P1Z9 1646 aa14.94□□□□□ -0.02
HOXD8-202ENST00000429017 RBM42Q9BTD8 480 aaKnown RBP14.83□□□□□ -0.04
HOXD8-202ENST00000429017 MYCNP04198 464 aaPredicted RBP14.72□□□□□ -0.05
HOXD8-202ENST00000429017 POLA2Q14181 598 aa14.7□□□□□ -0.06
HOXD8-202ENST00000429017 CHRDL2Q6WN34 429 aa14.7□□□□□ -0.06
HOXD8-202ENST00000429017 ATF5Q9Y2D1 282 aaPredicted RBP14.48□□□□□ -0.09
HOXD8-202ENST00000429017 AKT1S1Q96B36 256 aa14.45□□□□□ -0.1
HOXD8-202ENST00000429017 SP7Q8TDD2 431 aaPredicted RBP14.37□□□□□ -0.11
HOXD8-202ENST00000429017 FOXD4L1Q9NU39 408 aa14.36□□□□□ -0.11
HOXD8-202ENST00000429017 ZBTB12Q9Y330 459 aaPredicted RBP14.34□□□□□ -0.11
HOXD8-202ENST00000429017 REM2Q8IYK8 340 aaPredicted RBP14.32□□□□□ -0.12
HOXD8-202ENST00000429017 PIP4P2Q8N4L2 257 aa14.3□□□□□ -0.12
HOXD8-202ENST00000429017 SLC4A1APQ9BWU0 796 aaKnown RBP14.28□□□□□ -0.12
HOXD8-202ENST00000429017 OSCARQ8IYS5 282 aa14.27□□□□□ -0.12
HOXD8-202ENST00000429017 RB1CC1Q8TDY2 1594 aa14.26□□□□□ -0.13
HOXD8-202ENST00000429017 PITPNM1O00562 1244 aa14.19□□□□□ -0.14
HOXD8-202ENST00000429017 FXR2P51116 673 aaKnown RBP eCLIP14.18□□□□□ -0.14
HOXD8-202ENST00000429017 NACADO15069 1562 aa14.15□□□□□ -0.15
HOXD8-202ENST00000429017 ZBTB22O15209 634 aa14.12□□□□□ -0.15
HOXD8-202ENST00000429017 DCAF8L2P0C7V8 631 aa14.06□□□□□ -0.16
HOXD8-202ENST00000429017 HAX1O00165 279 aa14.04□□□□□ -0.16
HOXD8-202ENST00000429017 PABPN1Q86U42 306 aaKnown RBP eCLIP14.04□□□□□ -0.16
HOXD8-202ENST00000429017 UNC13AQ9UPW8 1703 aa13.99□□□□□ -0.17
HOXD8-202ENST00000429017 ATXN8OSP0DMR3 200 aa13.98□□□□□ -0.17
HOXD8-202ENST00000429017 EVX2Q03828 476 aa13.98□□□□□ -0.17
HOXD8-202ENST00000429017 MYO15BQ96JP2 1530 aa13.92□□□□□ -0.18
HOXD8-202ENST00000429017 SPDYE2BA6NHP3 402 aa13.92□□□□□ -0.18
HOXD8-202ENST00000429017 SPDYE6P0CI01 402 aa13.92□□□□□ -0.18
HOXD8-202ENST00000429017 SPDYE2Q495Y8 402 aa13.92□□□□□ -0.18
HOXD8-202ENST00000429017 BICRAQ9NZM4 1560 aa13.92□□□□□ -0.18
HOXD8-202ENST00000429017 MKRN4PQ13434 485 aaPredicted RBP13.82□□□□□ -0.2
HOXD8-202ENST00000429017 FBLN2P98095 1184 aa13.79□□□□□ -0.2
HOXD8-202ENST00000429017 ZCCHC6Q5VYS8 1495 aaKnown RBP13.77□□□□□ -0.2
HOXD8-202ENST00000429017 PRKAR2AP13861 404 aaKnown RBP13.76□□□□□ -0.21
HOXD8-202ENST00000429017 SSUH2Q9Y2M2 353 aa13.76□□□□□ -0.21
HOXD8-202ENST00000429017 SPDYE1Q8NFV5 336 aaPredicted RBP13.74□□□□□ -0.21
HOXD8-202ENST00000429017 C19orf67A6NJJ6 358 aa13.73□□□□□ -0.21
HOXD8-202ENST00000429017 DCAF1Q9Y4B6 1507 aa13.72□□□□□ -0.21
HOXD8-202ENST00000429017 CLEC11AQ9Y240 323 aa13.67□□□□□ -0.22
HOXD8-202ENST00000429017 SCRIBQ14160 1630 aa13.64□□□□□ -0.23
HOXD8-202ENST00000429017 ZNF692Q9BU19 519 aaPredicted RBP13.63□□□□□ -0.23
HOXD8-202ENST00000429017 SHROOM4Q9ULL8 1493 aa13.63□□□□□ -0.23
HOXD8-202ENST00000429017 CC2D2AQ9P2K1 1620 aa13.61□□□□□ -0.23
HOXD8-202ENST00000429017 GABBR2O75899 941 aa13.59□□□□□ -0.23
HOXD8-202ENST00000429017 CECR2Q9BXF3 1484 aa13.57□□□□□ -0.24
HOXD8-202ENST00000429017 EIF4G1Q04637 1599 aaKnown RBP13.55□□□□□ -0.24
HOXD8-202ENST00000429017 CHADLQ6NUI6 762 aa13.53□□□□□ -0.24
HOXD8-202ENST00000429017 LHX8Q68G74 356 aa13.45□□□□□ -0.26
HOXD8-202ENST00000429017 PRR29P0C7W0 189 aa13.42□□□□□ -0.26
HOXD8-202ENST00000429017 POTEIP0CG38 1075 aa13.38□□□□□ -0.27
HOXD8-202ENST00000429017 FARP1Q9Y4F1 1045 aaPredicted RBP13.31□□□□□ -0.28
HOXD8-202ENST00000429017 CD44P16070 742 aaKnown RBP13.29□□□□□ -0.28
HOXD8-202ENST00000429017 CLCN6P51797 869 aa13.21□□□□□ -0.29
HOXD8-202ENST00000429017 ZNF579Q8NAF0 562 aaKnown RBP13.14□□□□□ -0.31
HOXD8-202ENST00000429017 DNAJC5Q9H3Z4 198 aa13.12□□□□□ -0.31
HOXD8-202ENST00000429017 CREBZFQ9NS37 354 aa13.1□□□□□ -0.31
HOXD8-202ENST00000429017 NCAPD3P42695 1498 aa13.08□□□□□ -0.32
HOXD8-202ENST00000429017 CSRNP3Q8WYN3 585 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms