RNA–Protein interactions for RNA: ENST00000427191.6

PTPN13-203, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,487 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-203ENST00000427191 DDX10Q13206 875 aaKnown RBP18.85■□□□□ 0.61
PTPN13-203ENST00000427191 CHAF1AQ13111 956 aaPredicted RBP18.85■□□□□ 0.61
PTPN13-203ENST00000427191 CHGAP10645 457 aaKnown RBP18.84■□□□□ 0.61
PTPN13-203ENST00000427191 CDCA8Q53HL2 280 aa18.83■□□□□ 0.6
PTPN13-203ENST00000427191 CFAP53Q96M91 514 aa18.79■□□□□ 0.6
PTPN13-203ENST00000427191 CFAP44Q96MT7 982 aa18.78■□□□□ 0.6
PTPN13-203ENST00000427191 P3H3Q8IVL6 736 aa18.77■□□□□ 0.6
PTPN13-203ENST00000427191 MS4A1P11836 297 aa18.76■□□□□ 0.59
PTPN13-203ENST00000427191 EIF4G2P78344 907 aaKnown RBP eCLIP18.76■□□□□ 0.59
PTPN13-203ENST00000427191 TSPY4P0CV99 314 aa18.75■□□□□ 0.59
PTPN13-203ENST00000427191 TSPY10P0CW01 314 aa18.75■□□□□ 0.59
PTPN13-203ENST00000427191 NAP1L5Q96NT1 182 aaPredicted RBP18.73■□□□□ 0.59
PTPN13-203ENST00000427191 FTSJ3Q8IY81 847 aaKnown RBP18.72■□□□□ 0.59
PTPN13-203ENST00000427191 SALL2Q9Y467 1007 aaPredicted RBP18.71■□□□□ 0.59
PTPN13-203ENST00000427191 PTMSP20962 102 aa18.71■□□□□ 0.59
PTPN13-203ENST00000427191 CCDC180Q9P1Z9 1646 aa18.7■□□□□ 0.58
PTPN13-203ENST00000427191 MTUS2Q5JR59 1369 aa18.69■□□□□ 0.58
PTPN13-203ENST00000427191 RSF1Q96T23 1441 aaPredicted RBP18.69■□□□□ 0.58
PTPN13-203ENST00000427191 SCAF1Q9H7N4 1312 aaKnown RBP18.67■□□□□ 0.58
PTPN13-203ENST00000427191 PNNQ9H307 717 aaKnown RBP18.64■□□□□ 0.57
PTPN13-203ENST00000427191 MSNP26038 577 aaKnown RBP18.62■□□□□ 0.57
PTPN13-203ENST00000427191 KNSTRNQ9Y448 316 aa18.6■□□□□ 0.57
PTPN13-203ENST00000427191 USP35Q9P2H5 1018 aa18.6■□□□□ 0.57
PTPN13-203ENST00000427191 NOP58Q9Y2X3 529 aaKnown RBP18.59■□□□□ 0.57
PTPN13-203ENST00000427191 HSP90AB1P08238 724 aaKnown RBP18.58■□□□□ 0.57
PTPN13-203ENST00000427191 EEA1Q15075 1411 aa18.58■□□□□ 0.56
PTPN13-203ENST00000427191 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.57■□□□□ 0.56
PTPN13-203ENST00000427191 A0A0G2JS52 829 aa18.57■□□□□ 0.56
PTPN13-203ENST00000427191 MCCP23508 829 aa18.57■□□□□ 0.56
PTPN13-203ENST00000427191 GOLGA6L4A6NEF3 574 aa18.56■□□□□ 0.56
PTPN13-203ENST00000427191 NUDCQ9Y266 331 aa18.55■□□□□ 0.56
PTPN13-203ENST00000427191 MAPK8IP3Q9UPT6 1336 aa18.55■□□□□ 0.56
PTPN13-203ENST00000427191 PPP4R2Q9NY27 417 aa18.55■□□□□ 0.56
PTPN13-203ENST00000427191 HSCBQ8IWL3 235 aa18.54■□□□□ 0.56
PTPN13-203ENST00000427191 KIAA2012Q0VF49 1180 aa18.54■□□□□ 0.56
PTPN13-203ENST00000427191 FGD1P98174 961 aa18.54■□□□□ 0.56
PTPN13-203ENST00000427191 PPP1R15AO75807 674 aaPredicted RBP18.53■□□□□ 0.56
PTPN13-203ENST00000427191 HAP1P54257 671 aaPredicted RBP18.53■□□□□ 0.56
PTPN13-203ENST00000427191 SCRIBQ14160 1630 aa18.52■□□□□ 0.55
PTPN13-203ENST00000427191 KDM2AQ9Y2K7 1162 aa18.51■□□□□ 0.55
PTPN13-203ENST00000427191 CLIP1P30622 1438 aa18.5■□□□□ 0.55
PTPN13-203ENST00000427191 IRX6P78412 446 aaPredicted RBP18.47■□□□□ 0.55
PTPN13-203ENST00000427191 KCNJ4P48050 445 aa18.47■□□□□ 0.55
PTPN13-203ENST00000427191 PLCB2Q00722 1185 aa18.46■□□□□ 0.55
PTPN13-203ENST00000427191 MIER1Q8N108 512 aa18.46■□□□□ 0.55
PTPN13-203ENST00000427191 HTATSF1O43719 755 aaKnown RBP18.45■□□□□ 0.54
PTPN13-203ENST00000427191 CHIC2Q9UKJ5 165 aa18.45■□□□□ 0.54
PTPN13-203ENST00000427191 CHMP7Q8WUX9 453 aaPredicted RBP18.45■□□□□ 0.54
PTPN13-203ENST00000427191 SYAP1Q96A49 352 aaPredicted RBP18.44■□□□□ 0.54
PTPN13-203ENST00000427191 GOLGA3Q08378 1498 aa18.44■□□□□ 0.54
PTPN13-203ENST00000427191 C14orf37Q86TY3 774 aa18.44■□□□□ 0.54
PTPN13-203ENST00000427191 DRC7Q8IY82 874 aa18.43■□□□□ 0.54
PTPN13-203ENST00000427191 GOLGA2Q08379 1002 aa18.42■□□□□ 0.54
PTPN13-203ENST00000427191 OS9Q13438 667 aaPredicted RBP18.42■□□□□ 0.54
PTPN13-203ENST00000427191 CCDC34Q96HJ3 373 aa18.42■□□□□ 0.54
PTPN13-203ENST00000427191 GBP4Q96PP9 640 aa18.41■□□□□ 0.54
PTPN13-203ENST00000427191 ARID4BQ4LE39 1312 aaPredicted RBP18.4■□□□□ 0.54
PTPN13-203ENST00000427191 GOLGA6L1Q8N7Z2 621 aa18.38■□□□□ 0.53
PTPN13-203ENST00000427191 TPM4P67936 248 aa18.37■□□□□ 0.53
PTPN13-203ENST00000427191 ZBTB7CA1YPR0 619 aa18.36■□□□□ 0.53
PTPN13-203ENST00000427191 NOC3LQ8WTT2 800 aaKnown RBP18.36■□□□□ 0.53
PTPN13-203ENST00000427191 CHMP4AQ9BY43 222 aa18.36■□□□□ 0.53
PTPN13-203ENST00000427191 PLEKHG5O94827 1062 aa18.34■□□□□ 0.53
PTPN13-203ENST00000427191 NPHP1O15259 732 aa18.33■□□□□ 0.53
PTPN13-203ENST00000427191 TNNT3P45378 269 aaPredicted RBP18.33■□□□□ 0.53
PTPN13-203ENST00000427191 SUPT16HQ9Y5B9 1047 aaKnown RBP18.33■□□□□ 0.53
PTPN13-203ENST00000427191 GNL2Q13823 731 aaKnown RBP18.33■□□□□ 0.53
PTPN13-203ENST00000427191 LAS1LQ9Y4W2 734 aaKnown RBP18.33■□□□□ 0.52
PTPN13-203ENST00000427191 CSPP1Q1MSJ5 1256 aa18.32■□□□□ 0.52
PTPN13-203ENST00000427191 TULP1O00294 542 aaPredicted RBP18.31■□□□□ 0.52
PTPN13-203ENST00000427191 CARD11Q9BXL7 1154 aa18.31■□□□□ 0.52
PTPN13-203ENST00000427191 RGS3P49796 1198 aa18.3■□□□□ 0.52
PTPN13-203ENST00000427191 ZCCHC6Q5VYS8 1495 aaKnown RBP18.29■□□□□ 0.52
PTPN13-203ENST00000427191 PLEKHD1A6NEE1 506 aa18.28■□□□□ 0.52
PTPN13-203ENST00000427191 CALD1Q05682 793 aaKnown RBP18.28■□□□□ 0.52
PTPN13-203ENST00000427191 KIAA1211Q6ZU35 1233 aa18.28■□□□□ 0.52
PTPN13-203ENST00000427191 NAP1L2Q9ULW6 460 aaPredicted RBP18.28■□□□□ 0.52
PTPN13-203ENST00000427191 PHF14O94880 888 aa18.27■□□□□ 0.52
PTPN13-203ENST00000427191 IPO8O15397 1037 aaKnown RBP18.27■□□□□ 0.51
PTPN13-203ENST00000427191 TPRNQ4KMQ1 711 aa18.26■□□□□ 0.51
PTPN13-203ENST00000427191 TIMELESSQ9UNS1 1208 aa18.26■□□□□ 0.51
PTPN13-203ENST00000427191 SETQ01105 290 aaPredicted RBP18.25■□□□□ 0.51
PTPN13-203ENST00000427191 CLSTN1O94985 981 aa18.25■□□□□ 0.51
PTPN13-203ENST00000427191 FRAT1Q92837 279 aaPredicted RBP18.25■□□□□ 0.51
PTPN13-203ENST00000427191 HDAC5Q9UQL6 1122 aa18.24■□□□□ 0.51
PTPN13-203ENST00000427191 KANK1Q14678 1352 aa18.23■□□□□ 0.51
PTPN13-203ENST00000427191 HIRIP3Q9BW71 556 aaPredicted RBP18.23■□□□□ 0.51
PTPN13-203ENST00000427191 TRHP20396 242 aaPredicted RBP18.23■□□□□ 0.51
PTPN13-203ENST00000427191 CEP164Q9UPV0 1460 aa18.23■□□□□ 0.51
PTPN13-203ENST00000427191 CEP162Q5TB80 1403 aa18.22■□□□□ 0.51
PTPN13-203ENST00000427191 KCNH8Q96L42 1107 aa18.22■□□□□ 0.51
PTPN13-203ENST00000427191 HDGFP51858 240 aaKnown RBP18.21■□□□□ 0.51
PTPN13-203ENST00000427191 RRP7BPQ9NSQ0 103 aa18.21■□□□□ 0.51
PTPN13-203ENST00000427191 POGKQ9P215 609 aa18.21■□□□□ 0.51
PTPN13-203ENST00000427191 CCER2I3L3R5 266 aa18.21■□□□□ 0.5
PTPN13-203ENST00000427191 ERCC6Q03468 1493 aa18.2■□□□□ 0.5
PTPN13-203ENST00000427191 TMF1P82094 1093 aa18.2■□□□□ 0.5
PTPN13-203ENST00000427191 SENP3Q9H4L4 574 aaPredicted RBP18.2■□□□□ 0.5
PTPN13-203ENST00000427191 FHAD1B1AJZ9 1412 aa18.2■□□□□ 0.5
PTPN13-203ENST00000427191 RTN4Q9NQC3 1192 aaKnown RBP18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms