RNA–Protein interactions for RNA: ENST00000422392.6

CDH1-202, Transcript of cadherin 1, humanhuman

TSL 1 (best) BASIC

Gene CDH1, Length 2,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-202ENST00000422392 FANCD2Q9BXW9 1451 aa22.95■■□□□ 1.26
CDH1-202ENST00000422392 MAPKBP1O60336 1514 aa22.94■■□□□ 1.26
CDH1-202ENST00000422392 RAD54L2Q9Y4B4 1467 aa22.94■■□□□ 1.26
CDH1-202ENST00000422392 FAM50AQ14320 339 aaKnown RBP22.94■■□□□ 1.26
CDH1-202ENST00000422392 PCF11O94913 1555 aaKnown RBP22.93■■□□□ 1.26
CDH1-202ENST00000422392 MAP3K1Q13233 1512 aa22.92■■□□□ 1.26
CDH1-202ENST00000422392 FHOD3Q2V2M9 1422 aa22.89■■□□□ 1.25
CDH1-202ENST00000422392 SETD5Q9C0A6 1442 aa22.88■■□□□ 1.25
CDH1-202ENST00000422392 FHAD1B1AJZ9 1412 aa22.86■■□□□ 1.25
CDH1-202ENST00000422392 CFAP43Q8NDM7 1665 aa22.86■■□□□ 1.25
CDH1-202ENST00000422392 NESP48681 1621 aa22.86■■□□□ 1.25
CDH1-202ENST00000422392 SIN3AQ96ST3 1273 aa22.85■■□□□ 1.25
CDH1-202ENST00000422392 POLA1P09884 1462 aaPredicted RBP22.83■■□□□ 1.24
CDH1-202ENST00000422392 DNMBPQ6XZF7 1577 aa22.82■■□□□ 1.24
CDH1-202ENST00000422392 TOPBP1Q92547 1522 aa22.81■■□□□ 1.24
CDH1-202ENST00000422392 ABCA10Q8WWZ4 1543 aa22.79■■□□□ 1.24
CDH1-202ENST00000422392 KCNH8Q96L42 1107 aa22.78■■□□□ 1.24
CDH1-202ENST00000422392 WDR97A6NE52 1622 aa22.77■■□□□ 1.24
CDH1-202ENST00000422392 CTTNBP2Q8WZ74 1663 aa22.73■■□□□ 1.23
CDH1-202ENST00000422392 FYCO1Q9BQS8 1478 aa22.72■■□□□ 1.23
CDH1-202ENST00000422392 CASKIN1Q8WXD9 1431 aa22.7■■□□□ 1.22
CDH1-202ENST00000422392 EFCAB5A4FU69 1503 aa22.69■■□□□ 1.22
CDH1-202ENST00000422392 CUL7Q14999 1698 aa22.69■■□□□ 1.22
CDH1-202ENST00000422392 HIRIP3Q9BW71 556 aaPredicted RBP22.68■■□□□ 1.22
CDH1-202ENST00000422392 SUPT16HQ9Y5B9 1047 aaKnown RBP22.68■■□□□ 1.22
CDH1-202ENST00000422392 DDX10Q13206 875 aaKnown RBP22.67■■□□□ 1.22
CDH1-202ENST00000422392 TDRD9Q8NDG6 1382 aaKnown RBP22.64■■□□□ 1.21
CDH1-202ENST00000422392 URB2Q14146 1524 aaKnown RBP22.63■■□□□ 1.21
CDH1-202ENST00000422392 AQRO60306 1485 aaKnown RBP eCLIP22.62■■□□□ 1.21
CDH1-202ENST00000422392 SNAPC4Q5SXM2 1469 aa22.61■■□□□ 1.21
CDH1-202ENST00000422392 LRRIQ1Q96JM4 1722 aa22.61■■□□□ 1.21
CDH1-202ENST00000422392 FGD6Q6ZV73 1430 aa22.6■■□□□ 1.21
CDH1-202ENST00000422392 FMN1Q68DA7 1419 aa22.59■■□□□ 1.21
CDH1-202ENST00000422392 MTUS2Q5JR59 1369 aa22.58■■□□□ 1.21
CDH1-202ENST00000422392 PTPRKQ15262 1439 aa22.55■■□□□ 1.2
CDH1-202ENST00000422392 PPP1R15AO75807 674 aaPredicted RBP22.55■■□□□ 1.2
CDH1-202ENST00000422392 DNAJC5BQ9UF47 199 aa22.54■■□□□ 1.2
CDH1-202ENST00000422392 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.54■■□□□ 1.2
CDH1-202ENST00000422392 ABCA5Q8WWZ7 1642 aa22.53■■□□□ 1.2
CDH1-202ENST00000422392 CCDC18Q5T9S5 1454 aa22.52■■□□□ 1.2
CDH1-202ENST00000422392 GAPVD1Q14C86 1478 aa22.51■■□□□ 1.19
CDH1-202ENST00000422392 LAMC3Q9Y6N6 1575 aa22.51■■□□□ 1.19
CDH1-202ENST00000422392 SAMD9Q5K651 1589 aa22.51■■□□□ 1.19
CDH1-202ENST00000422392 TIMELESSQ9UNS1 1208 aa22.49■■□□□ 1.19
CDH1-202ENST00000422392 NCOA2Q15596 1464 aa22.47■■□□□ 1.19
CDH1-202ENST00000422392 PTPN23Q9H3S7 1636 aa22.46■■□□□ 1.19
CDH1-202ENST00000422392 TONSLQ96HA7 1378 aa22.45■■□□□ 1.18
CDH1-202ENST00000422392 GRIN2BQ13224 1484 aa22.45■■□□□ 1.18
CDH1-202ENST00000422392 HFM1A2PYH4 1435 aa22.44■■□□□ 1.18
CDH1-202ENST00000422392 KIF21AQ7Z4S6 1674 aa22.43■■□□□ 1.18
CDH1-202ENST00000422392 MYOM3Q5VTT5 1437 aa22.43■■□□□ 1.18
CDH1-202ENST00000422392 UACAQ9BZF9 1416 aa22.42■■□□□ 1.18
CDH1-202ENST00000422392 SUPT6HQ7KZ85 1726 aaKnown RBP22.42■■□□□ 1.18
CDH1-202ENST00000422392 NAIPQ13075 1403 aa22.41■■□□□ 1.18
CDH1-202ENST00000422392 BCANQ96GW7 911 aa22.4■■□□□ 1.18
CDH1-202ENST00000422392 MAGI3Q5TCQ9 1506 aa22.39■■□□□ 1.18
CDH1-202ENST00000422392 CHIC2Q9UKJ5 165 aa22.38■■□□□ 1.17
CDH1-202ENST00000422392 PDS5BQ9NTI5 1447 aa22.38■■□□□ 1.17
CDH1-202ENST00000422392 RRP7BPQ9NSQ0 103 aa22.37■■□□□ 1.17
CDH1-202ENST00000422392 TRIM52Q96A61 297 aa22.36■■□□□ 1.17
CDH1-202ENST00000422392 EHBP1L1Q8N3D4 1523 aa22.36■■□□□ 1.17
CDH1-202ENST00000422392 ARID3CA6NKF2 412 aa22.36■■□□□ 1.17
CDH1-202ENST00000422392 ANP32CO43423 234 aa22.35■■□□□ 1.17
CDH1-202ENST00000422392 TARBP1Q13395 1621 aaKnown RBP22.33■■□□□ 1.16
CDH1-202ENST00000422392 THOC2Q8NI27 1593 aaKnown RBP22.33■■□□□ 1.16
CDH1-202ENST00000422392 UGGT2Q9NYU1 1516 aa22.33■■□□□ 1.16
CDH1-202ENST00000422392 FKBP8Q14318 412 aa22.31■■□□□ 1.16
CDH1-202ENST00000422392 TSHZ2Q9NRE2 1034 aa22.31■■□□□ 1.16
CDH1-202ENST00000422392 PBRM1Q86U86 1689 aa22.28■■□□□ 1.16
CDH1-202ENST00000422392 ARHGEF11O15085 1522 aa22.27■■□□□ 1.16
CDH1-202ENST00000422392 KDM5BQ9UGL1 1544 aa22.27■■□□□ 1.16
CDH1-202ENST00000422392 CCER2I3L3R5 266 aa22.27■■□□□ 1.16
CDH1-202ENST00000422392 KDM6BO15054 1643 aa22.26■■□□□ 1.15
CDH1-202ENST00000422392 CDK13Q14004 1512 aaKnown RBP22.25■■□□□ 1.15
CDH1-202ENST00000422392 HECW1Q76N89 1606 aa22.23■■□□□ 1.15
CDH1-202ENST00000422392 DENND4BO75064 1496 aaPredicted RBP22.22■■□□□ 1.15
CDH1-202ENST00000422392 IQGAP2Q13576 1575 aa22.22■■□□□ 1.15
CDH1-202ENST00000422392 EPRSP07814 1512 aaKnown RBP22.22■■□□□ 1.15
CDH1-202ENST00000422392 GCC2Q8IWJ2 1684 aa22.2■■□□□ 1.14
CDH1-202ENST00000422392 MYT1Q01538 1121 aa22.2■■□□□ 1.14
CDH1-202ENST00000422392 FOXD1Q16676 465 aa22.19■■□□□ 1.14
CDH1-202ENST00000422392 TCOF1Q13428 1488 aaKnown RBP22.18■■□□□ 1.14
CDH1-202ENST00000422392 ADAMTS12P58397 1594 aa22.17■■□□□ 1.14
CDH1-202ENST00000422392 HSPA5P11021 654 aaKnown RBP22.15■■□□□ 1.14
CDH1-202ENST00000422392 WDR62O43379 1518 aa22.13■■□□□ 1.13
CDH1-202ENST00000422392 WASHC2AQ641Q2 1341 aa22.13■■□□□ 1.13
CDH1-202ENST00000422392 MPHOSPH9Q99550 1183 aa22.12■■□□□ 1.13
CDH1-202ENST00000422392 NEFLP07196 543 aa22.12■■□□□ 1.13
CDH1-202ENST00000422392 L3MBTL2Q969R5 705 aa22.08■■□□□ 1.12
CDH1-202ENST00000422392 ZNF608Q9ULD9 1512 aaPredicted RBP22.07■■□□□ 1.12
CDH1-202ENST00000422392 MIA2Q96PC5 1412 aa22.07■■□□□ 1.12
CDH1-202ENST00000422392 ZNF644Q9H582 1327 aaPredicted RBP22.07■■□□□ 1.12
CDH1-202ENST00000422392 HNRNPUQ00839 825 aaKnown RBP eCLIP22.06■■□□□ 1.12
CDH1-202ENST00000422392 AKNAQ7Z591 1439 aa22.05■■□□□ 1.12
CDH1-202ENST00000422392 EIF4G2P78344 907 aaKnown RBP eCLIP22.04■■□□□ 1.12
CDH1-202ENST00000422392 MRC2Q9UBG0 1479 aa22.04■■□□□ 1.12
CDH1-202ENST00000422392 C11orf95C9JLR9 678 aaPredicted RBP22.01■■□□□ 1.11
CDH1-202ENST00000422392 DAPK1P53355 1430 aa22.01■■□□□ 1.11
CDH1-202ENST00000422392 CCDC184Q52MB2 194 aa21.99■■□□□ 1.11
CDH1-202ENST00000422392 DISP1Q96F81 1524 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms