RNA–Protein interactions for RNA: ENST00000409769.6

CLK1-203, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 1,192 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-203ENST00000409769 LHX8Q68G74 356 aa13.96□□□□□ -0.17
CLK1-203ENST00000409769 RASEFQ8IZ41 740 aa13.96□□□□□ -0.17
CLK1-203ENST00000409769 MS4A3Q96HJ5 214 aa13.93□□□□□ -0.18
CLK1-203ENST00000409769 NUBP1P53384 320 aa13.92□□□□□ -0.18
CLK1-203ENST00000409769 KIF12Q96FN5 646 aa13.91□□□□□ -0.18
CLK1-203ENST00000409769 FAM212AQ96EL1 285 aa13.9□□□□□ -0.18
CLK1-203ENST00000409769 VASPP50552 380 aaPredicted RBP13.88□□□□□ -0.19
CLK1-203ENST00000409769 SGIP1Q9BQI5 828 aa13.86□□□□□ -0.19
CLK1-203ENST00000409769 ASTLQ6HA08 431 aaPredicted RBP13.85□□□□□ -0.19
CLK1-203ENST00000409769 MAP3K13O43283 966 aa13.81□□□□□ -0.2
CLK1-203ENST00000409769 ATMINO43313 823 aaPredicted RBP13.79□□□□□ -0.2
CLK1-203ENST00000409769 KLHL34Q8N239 644 aa13.78□□□□□ -0.2
CLK1-203ENST00000409769 TIE1P35590 1138 aa13.77□□□□□ -0.21
CLK1-203ENST00000409769 SLC39A7Q92504 469 aa13.77□□□□□ -0.21
CLK1-203ENST00000409769 PCDHB13Q9Y5F0 798 aa13.75□□□□□ -0.21
CLK1-203ENST00000409769 C7P10643 843 aa13.74□□□□□ -0.21
CLK1-203ENST00000409769 DCAF8Q5TAQ9 597 aa13.73□□□□□ -0.21
CLK1-203ENST00000409769 PELP1Q8IZL8 1130 aaKnown RBP13.72□□□□□ -0.21
CLK1-203ENST00000409769 GSE1Q14687 1217 aa13.7□□□□□ -0.22
CLK1-203ENST00000409769 BMP2KQ9NSY1 1161 aaPredicted RBP13.7□□□□□ -0.22
CLK1-203ENST00000409769 METRNQ9UJH8 293 aa13.7□□□□□ -0.22
CLK1-203ENST00000409769 ATN1P54259 1190 aaPredicted RBP13.68□□□□□ -0.22
CLK1-203ENST00000409769 TRPC6Q9Y210 931 aa13.65□□□□□ -0.22
CLK1-203ENST00000409769 TTLL13PA6NNM8 815 aa13.63□□□□□ -0.23
CLK1-203ENST00000409769 IFNL1Q8IU54 200 aa13.63□□□□□ -0.23
CLK1-203ENST00000409769 PYGBP11216 843 aa13.6□□□□□ -0.23
CLK1-203ENST00000409769 SPOCK2Q92563 424 aa13.6□□□□□ -0.23
CLK1-203ENST00000409769 POTEB2H3BUK9 544 aa13.58□□□□□ -0.24
CLK1-203ENST00000409769 IFNLR1Q8IU57 520 aaPredicted RBP13.58□□□□□ -0.24
CLK1-203ENST00000409769 IER5LQ5T953 404 aa13.57□□□□□ -0.24
CLK1-203ENST00000409769 CHRM1P11229 460 aaPredicted RBP13.55□□□□□ -0.24
CLK1-203ENST00000409769 MAMSTRQ6ZN01 415 aa13.55□□□□□ -0.24
CLK1-203ENST00000409769 TRIM35Q9UPQ4 493 aa13.55□□□□□ -0.24
CLK1-203ENST00000409769 ZNF467Q7Z7K2 595 aaPredicted RBP13.53□□□□□ -0.24
CLK1-203ENST00000409769 OTUD5Q96G74 571 aa13.53□□□□□ -0.24
CLK1-203ENST00000409769 TMEM106CQ9BVX2 250 aa13.53□□□□□ -0.24
CLK1-203ENST00000409769 SEC24BO95487 1268 aa13.5□□□□□ -0.25
CLK1-203ENST00000409769 SCUBE2Q9NQ36 999 aa13.47□□□□□ -0.25
CLK1-203ENST00000409769 PCDHB8Q9UN66 801 aa13.46□□□□□ -0.25
CLK1-203ENST00000409769 POTEFA5A3E0 1075 aa13.45□□□□□ -0.26
CLK1-203ENST00000409769 CIZ1Q9ULV3 898 aaPredicted RBP13.45□□□□□ -0.26
CLK1-203ENST00000409769 TRIM41Q8WV44 630 aa13.43□□□□□ -0.26
CLK1-203ENST00000409769 POTEJP0CG39 1038 aa13.4□□□□□ -0.26
CLK1-203ENST00000409769 COLQQ9Y215 455 aaPredicted RBP13.4□□□□□ -0.26
CLK1-203ENST00000409769 PLCG2P16885 1265 aa13.38□□□□□ -0.27
CLK1-203ENST00000409769 IRX5P78411 483 aaPredicted RBP13.35□□□□□ -0.27
CLK1-203ENST00000409769 GOLGA2Q08379 1002 aa13.34□□□□□ -0.27
CLK1-203ENST00000409769 PSEN1P49768 467 aa13.33□□□□□ -0.28
CLK1-203ENST00000409769 PDAP1Q13442 181 aaKnown RBP13.33□□□□□ -0.28
CLK1-203ENST00000409769 OCEL1Q9H607 264 aa13.33□□□□□ -0.28
CLK1-203ENST00000409769 MKRN3Q13064 507 aaKnown RBP13.3□□□□□ -0.28
CLK1-203ENST00000409769 L3MBTL3Q96JM7 780 aaPredicted RBP13.17□□□□□ -0.3
CLK1-203ENST00000409769 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.17□□□□□ -0.36e-10■■□□□ 13.9
CLK1-203ENST00000409769 PDCD7Q8N8D1 485 aaKnown RBP13.16□□□□□ -0.3
CLK1-203ENST00000409769 SLAIN1Q8ND83 568 aa13.15□□□□□ -0.3
CLK1-203ENST00000409769 CABP2Q9NPB3 220 aa13.15□□□□□ -0.3
CLK1-203ENST00000409769 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.14□□□□□ -0.31
CLK1-203ENST00000409769 RIOK3O14730 519 aaKnown RBP13.13□□□□□ -0.31
CLK1-203ENST00000409769 ILDR1Q86SU0 546 aaPredicted RBP13.13□□□□□ -0.31
CLK1-203ENST00000409769 POTEMA6NI47 508 aa13.12□□□□□ -0.31
CLK1-203ENST00000409769 TAOK2Q9UL54 1235 aa13.12□□□□□ -0.31
CLK1-203ENST00000409769 VGFO15240 615 aaPredicted RBP13.1□□□□□ -0.31
CLK1-203ENST00000409769 POTEGQ6S5H5 508 aa13.09□□□□□ -0.31
CLK1-203ENST00000409769 FAM163AQ96GL9 167 aaPredicted RBP13.09□□□□□ -0.31
CLK1-203ENST00000409769 C3orf67Q6ZVT6 689 aa13.08□□□□□ -0.32
CLK1-203ENST00000409769 RNF25Q96BH1 459 aaPredicted RBP13.05□□□□□ -0.32
CLK1-203ENST00000409769 PCDH10Q9P2E7 1040 aa13.05□□□□□ -0.32
CLK1-203ENST00000409769 G3V3G9 751 aa13.04□□□□□ -0.32
CLK1-203ENST00000409769 SNPHO15079 494 aa13.04□□□□□ -0.32
CLK1-203ENST00000409769 LCE2DQ5TA82 110 aaPredicted RBP13.02□□□□□ -0.33
CLK1-203ENST00000409769 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13□□□□□ -0.33
CLK1-203ENST00000409769 EFCAB3Q8N7B9 438 aa13□□□□□ -0.33
CLK1-203ENST00000409769 ZFP91Q96JP5 570 aaPredicted RBP13□□□□□ -0.33
CLK1-203ENST00000409769 SOX12O15370 315 aa12.99□□□□□ -0.33
CLK1-203ENST00000409769 ECM2O94769 699 aaPredicted RBP12.98□□□□□ -0.33
CLK1-203ENST00000409769 BOLA1Q9Y3E2 137 aa12.98□□□□□ -0.33
CLK1-203ENST00000409769 DPY19L2Q6NUT2 758 aa12.94□□□□□ -0.34
CLK1-203ENST00000409769 TMEM121BQ9BXQ6 578 aaPredicted RBP12.93□□□□□ -0.34
CLK1-203ENST00000409769 ST18O60284 1047 aa12.92□□□□□ -0.34
CLK1-203ENST00000409769 PKD2Q13563 968 aa12.89□□□□□ -0.35
CLK1-203ENST00000409769 BCL11BQ9C0K0 894 aaPredicted RBP12.88□□□□□ -0.35
CLK1-203ENST00000409769 STK24Q9Y6E0 443 aa12.85□□□□□ -0.35
CLK1-203ENST00000409769 STK25O00506 426 aa12.84□□□□□ -0.35
CLK1-203ENST00000409769 NLRP6P59044 892 aa12.84□□□□□ -0.35
CLK1-203ENST00000409769 PLSCR2Q9NRY7 297 aa12.83□□□□□ -0.36
CLK1-203ENST00000409769 PHF8Q9UPP1 1060 aa12.83□□□□□ -0.36
CLK1-203ENST00000409769 MICALL2Q8IY33 904 aa12.81□□□□□ -0.36
CLK1-203ENST00000409769 RGL2O15211 777 aa12.8□□□□□ -0.36
CLK1-203ENST00000409769 MS4A4AQ96JQ5 239 aa12.8□□□□□ -0.36
CLK1-203ENST00000409769 CDAN1Q8IWY9 1227 aa12.76□□□□□ -0.37
CLK1-203ENST00000409769 FBXO22Q8NEZ5 403 aa12.76□□□□□ -0.37
CLK1-203ENST00000409769 DOK7Q18PE1 504 aa12.74□□□□□ -0.37
CLK1-203ENST00000409769 MFRPQ9BY79 579 aa12.73□□□□□ -0.37
CLK1-203ENST00000409769 RIMBP2O15034 1052 aa12.7□□□□□ -0.38
CLK1-203ENST00000409769 EMP3P54852 163 aa12.69□□□□□ -0.38
CLK1-203ENST00000409769 ZNF710Q8N1W2 664 aa12.69□□□□□ -0.38
CLK1-203ENST00000409769 HOXB3P14651 431 aaPredicted RBP12.68□□□□□ -0.38
CLK1-203ENST00000409769 MARVELD3Q96A59 401 aa12.68□□□□□ -0.38
CLK1-203ENST00000409769 ZSWIM6Q9HCJ5 1215 aa12.65□□□□□ -0.38
CLK1-203ENST00000409769 TMEM92Q6UXU6 159 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms