RNA–Protein interactions for RNA: ENST00000409769.6

CLK1-203, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 1,192 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-203ENST00000409769 AEBP2Q6ZN18 517 aaPredicted RBP28.13■■■□□ 2.09
CLK1-203ENST00000409769 CHIC1Q5VXU3 224 aa27.01■■□□□ 1.91
CLK1-203ENST00000409769 SENP3Q9H4L4 574 aaPredicted RBP24.14■■□□□ 1.45
CLK1-203ENST00000409769 PHF23Q9BUL5 403 aaPredicted RBP23.77■■□□□ 1.4
CLK1-203ENST00000409769 FOXD1Q16676 465 aa22.36■■□□□ 1.17
CLK1-203ENST00000409769 PLPPR3Q6T4P5 718 aa21.73■■□□□ 1.07
CLK1-203ENST00000409769 MSH5O43196 834 aa21■□□□□ 0.95
CLK1-203ENST00000409769 PIAS4Q8N2W9 510 aaPredicted RBP20.99■□□□□ 0.95
CLK1-203ENST00000409769 PPP6R1Q9UPN7 881 aa20.98■□□□□ 0.95
CLK1-203ENST00000409769 ADRA2BP18089 450 aa20.95■□□□□ 0.94
CLK1-203ENST00000409769 POTEDQ86YR6 584 aa20.04■□□□□ 0.8
CLK1-203ENST00000409769 SCAF1Q9H7N4 1312 aaKnown RBP19.39■□□□□ 0.69
CLK1-203ENST00000409769 MAPK8IP2Q13387 824 aaPredicted RBP19.14■□□□□ 0.65
CLK1-203ENST00000409769 DMRT2Q9Y5R5 561 aa19.14■□□□□ 0.65
CLK1-203ENST00000409769 PPP4R3CPQ6ZMV5 832 aa19.01■□□□□ 0.63
CLK1-203ENST00000409769 CNKSR2Q8WXI2 1034 aa18.67■□□□□ 0.58
CLK1-203ENST00000409769 HOXD11P31277 338 aaPredicted RBP18.52■□□□□ 0.56
CLK1-203ENST00000409769 RNF216Q9NWF9 866 aaPredicted RBP18.46■□□□□ 0.55
CLK1-203ENST00000409769 NCBP3Q53F19 620 aaKnown RBP18.45■□□□□ 0.54
CLK1-203ENST00000409769 DCAF8L1A6NGE4 600 aa18.29■□□□□ 0.52
CLK1-203ENST00000409769 NPM3O75607 178 aaKnown RBP18.05■□□□□ 0.48
CLK1-203ENST00000409769 DNAJC5BQ9UF47 199 aa17.97■□□□□ 0.47
CLK1-203ENST00000409769 RNF39Q9H2S5 420 aa17.86■□□□□ 0.45
CLK1-203ENST00000409769 KCNA4P22459 653 aa17.83■□□□□ 0.44
CLK1-203ENST00000409769 CACNB1Q02641 598 aaPredicted RBP17.83■□□□□ 0.44
CLK1-203ENST00000409769 C1QBPQ07021 282 aaKnown RBP17.68■□□□□ 0.42
CLK1-203ENST00000409769 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.63■□□□□ 0.411e-8■□□□□ 11.2
CLK1-203ENST00000409769 U3KPZ7 1027 aaPredicted RBP17.23■□□□□ 0.35
CLK1-203ENST00000409769 SLC4A2P04920 1241 aa17.15■□□□□ 0.34
CLK1-203ENST00000409769 APLP2Q06481 763 aa17■□□□□ 0.31
CLK1-203ENST00000409769 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.99■□□□□ 0.31
CLK1-203ENST00000409769 HNRNPUL2Q1KMD3 747 aaKnown RBP16.99■□□□□ 0.31
CLK1-203ENST00000409769 SLC4A1APQ9BWU0 796 aaKnown RBP16.93■□□□□ 0.3
CLK1-203ENST00000409769 CAPN15O75808 1086 aa16.92■□□□□ 0.3
CLK1-203ENST00000409769 SPINK5Q9NQ38 1064 aaPredicted RBP16.88■□□□□ 0.29
CLK1-203ENST00000409769 SAMD1Q6SPF0 538 aaPredicted RBP16.85■□□□□ 0.29
CLK1-203ENST00000409769 MYCNP04198 464 aaPredicted RBP16.78■□□□□ 0.28
CLK1-203ENST00000409769 DSG3P32926 999 aa16.77■□□□□ 0.28
CLK1-203ENST00000409769 ZNF219Q9P2Y4 722 aaPredicted RBP16.77■□□□□ 0.28
CLK1-203ENST00000409769 TRHP20396 242 aaPredicted RBP16.67■□□□□ 0.26
CLK1-203ENST00000409769 FOXD4L1Q9NU39 408 aa16.67■□□□□ 0.26
CLK1-203ENST00000409769 ABCB7O75027 752 aa16.47■□□□□ 0.23
CLK1-203ENST00000409769 ZBTB22O15209 634 aa16.33■□□□□ 0.2
CLK1-203ENST00000409769 POLA2Q14181 598 aa16.27■□□□□ 0.2
CLK1-203ENST00000409769 ATXN8OSP0DMR3 200 aa16.23■□□□□ 0.19
CLK1-203ENST00000409769 ATF5Q9Y2D1 282 aaPredicted RBP16.2■□□□□ 0.18
CLK1-203ENST00000409769 RBM42Q9BTD8 480 aaKnown RBP16.13■□□□□ 0.17
CLK1-203ENST00000409769 ZBTB12Q9Y330 459 aaPredicted RBP16.12■□□□□ 0.17
CLK1-203ENST00000409769 CSRNP3Q8WYN3 585 aa15.81■□□□□ 0.12
CLK1-203ENST00000409769 POTEHQ6S545 545 aa15.78■□□□□ 0.12
CLK1-203ENST00000409769 FBLN2P98095 1184 aa15.75■□□□□ 0.11
CLK1-203ENST00000409769 AKT1S1Q96B36 256 aa15.75■□□□□ 0.11
CLK1-203ENST00000409769 OSCARQ8IYS5 282 aa15.72■□□□□ 0.11
CLK1-203ENST00000409769 EHMT2Q96KQ7 1210 aa15.67■□□□□ 0.1
CLK1-203ENST00000409769 CHRDL2Q6WN34 429 aa15.59■□□□□ 0.09
CLK1-203ENST00000409769 SPDYE2BA6NHP3 402 aa15.58■□□□□ 0.08
CLK1-203ENST00000409769 SPDYE6P0CI01 402 aa15.58■□□□□ 0.08
CLK1-203ENST00000409769 SPDYE2Q495Y8 402 aa15.58■□□□□ 0.08
CLK1-203ENST00000409769 REM2Q8IYK8 340 aaPredicted RBP15.53■□□□□ 0.08
CLK1-203ENST00000409769 MKRN4PQ13434 485 aaPredicted RBP15.5■□□□□ 0.07
CLK1-203ENST00000409769 ZNF692Q9BU19 519 aaPredicted RBP15.36■□□□□ 0.05
CLK1-203ENST00000409769 PITPNM1O00562 1244 aa15.34■□□□□ 0.05
CLK1-203ENST00000409769 SSUH2Q9Y2M2 353 aa15.34■□□□□ 0.05
CLK1-203ENST00000409769 SPDYE1Q8NFV5 336 aaPredicted RBP15.26■□□□□ 0.03
CLK1-203ENST00000409769 PIP4P2Q8N4L2 257 aa15.23■□□□□ 0.03
CLK1-203ENST00000409769 FXR2P51116 673 aaKnown RBP eCLIP15.21■□□□□ 0.03
CLK1-203ENST00000409769 CLEC11AQ9Y240 323 aa15.14■□□□□ 0.01
CLK1-203ENST00000409769 PABPN1Q86U42 306 aaKnown RBP eCLIP15.12■□□□□ 0.01
CLK1-203ENST00000409769 PRKAR2AP13861 404 aaKnown RBP14.97□□□□□ -0.01
CLK1-203ENST00000409769 PRR29P0C7W0 189 aa14.96□□□□□ -0.01
CLK1-203ENST00000409769 SPDYE4A6NLX3 237 aa14.95□□□□□ -0.02
CLK1-203ENST00000409769 HAX1O00165 279 aa14.92□□□□□ -0.02
CLK1-203ENST00000409769 SP7Q8TDD2 431 aaPredicted RBP14.89□□□□□ -0.03
CLK1-203ENST00000409769 STAG3Q9UJ98 1225 aa14.88□□□□□ -0.03
CLK1-203ENST00000409769 CHADLQ6NUI6 762 aa14.76□□□□□ -0.05
CLK1-203ENST00000409769 C19orf67A6NJJ6 358 aa14.71□□□□□ -0.05
CLK1-203ENST00000409769 FARP1Q9Y4F1 1045 aaPredicted RBP14.65□□□□□ -0.06
CLK1-203ENST00000409769 EVX2Q03828 476 aa14.63□□□□□ -0.07
CLK1-203ENST00000409769 PROM2Q8N271 834 aa14.63□□□□□ -0.07
CLK1-203ENST00000409769 CREBZFQ9NS37 354 aa14.57□□□□□ -0.08
CLK1-203ENST00000409769 CD44P16070 742 aaKnown RBP14.51□□□□□ -0.09
CLK1-203ENST00000409769 CLCN6P51797 869 aa14.48□□□□□ -0.09
CLK1-203ENST00000409769 NPM1P06748 294 aaKnown RBP eCLIP14.44□□□□□ -0.1
CLK1-203ENST00000409769 GABBR2O75899 941 aa14.42□□□□□ -0.1
CLK1-203ENST00000409769 PAK3O75914 559 aaPredicted RBP14.37□□□□□ -0.11
CLK1-203ENST00000409769 PLEKHG5O94827 1062 aa14.35□□□□□ -0.11
CLK1-203ENST00000409769 FKBP8Q14318 412 aa14.35□□□□□ -0.11
CLK1-203ENST00000409769 MNX1P50219 401 aaPredicted RBP14.34□□□□□ -0.11
CLK1-203ENST00000409769 ZNF579Q8NAF0 562 aaKnown RBP14.33□□□□□ -0.12
CLK1-203ENST00000409769 ZRANB1Q9UGI0 708 aa14.33□□□□□ -0.12
CLK1-203ENST00000409769 MIER1Q8N108 512 aa14.24□□□□□ -0.13
CLK1-203ENST00000409769 PLCD3Q8N3E9 789 aa14.17□□□□□ -0.14
CLK1-203ENST00000409769 ZBTB47Q9UFB7 747 aaPredicted RBP14.17□□□□□ -0.14
CLK1-203ENST00000409769 FBXO3Q9UK99 471 aa14.15□□□□□ -0.14
CLK1-203ENST00000409769 DCBLD2Q96PD2 775 aa14.13□□□□□ -0.15
CLK1-203ENST00000409769 PHF12Q96QT6 1004 aa14.08□□□□□ -0.16
CLK1-203ENST00000409769 GALR2O43603 387 aaPredicted RBP14.06□□□□□ -0.16
CLK1-203ENST00000409769 POTEIP0CG38 1075 aa14.05□□□□□ -0.16
CLK1-203ENST00000409769 TSPYL2Q9H2G4 693 aaPredicted RBP14.05□□□□□ -0.16
CLK1-203ENST00000409769 CCDC61Q9Y6R9 512 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms