RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 MNX1P50219 401 aaPredicted RBP10.67□□□□□ -0.7
CLK1-202ENST00000409403 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.67□□□□□ -0.7
CLK1-202ENST00000409403 NPM1P06748 294 aaKnown RBP eCLIP10.66□□□□□ -0.7
CLK1-202ENST00000409403 PRKAR2AP13861 404 aaKnown RBP10.65□□□□□ -0.7
CLK1-202ENST00000409403 HAP1P54257 671 aaPredicted RBP10.65□□□□□ -0.7
CLK1-202ENST00000409403 DCAF8Q5TAQ9 597 aa10.64□□□□□ -0.71
CLK1-202ENST00000409403 FAM212AQ96EL1 285 aa10.63□□□□□ -0.71
CLK1-202ENST00000409403 HAX1O00165 279 aa10.61□□□□□ -0.71
CLK1-202ENST00000409403 CHGAP10645 457 aaKnown RBP10.6□□□□□ -0.71
CLK1-202ENST00000409403 PAXIP1Q6ZW49 1069 aaPredicted RBP10.57□□□□□ -0.72
CLK1-202ENST00000409403 RNF25Q96BH1 459 aaPredicted RBP10.57□□□□□ -0.72
CLK1-202ENST00000409403 RASEFQ8IZ41 740 aa10.57□□□□□ -0.72
CLK1-202ENST00000409403 CHADLQ6NUI6 762 aa10.55□□□□□ -0.72
CLK1-202ENST00000409403 CFAP44Q96MT7 982 aa10.55□□□□□ -0.72
CLK1-202ENST00000409403 PLSCR2Q9NRY7 297 aa10.54□□□□□ -0.72
CLK1-202ENST00000409403 HS6ST3Q8IZP7 471 aa10.53□□□□□ -0.72
CLK1-202ENST00000409403 TAOK2Q9UL54 1235 aa10.53□□□□□ -0.72
CLK1-202ENST00000409403 RIOK3O14730 519 aaKnown RBP10.53□□□□□ -0.72
CLK1-202ENST00000409403 SPRYD3Q8NCJ5 442 aa10.52□□□□□ -0.73
CLK1-202ENST00000409403 CHRM1P11229 460 aaPredicted RBP10.51□□□□□ -0.73
CLK1-202ENST00000409403 VSIG10Q8N0Z9 540 aa10.51□□□□□ -0.73
CLK1-202ENST00000409403 EVX2Q03828 476 aa10.5□□□□□ -0.73
CLK1-202ENST00000409403 CCDC180Q9P1Z9 1646 aa10.49□□□□□ -0.73
CLK1-202ENST00000409403 FARP1Q9Y4F1 1045 aaPredicted RBP10.47□□□□□ -0.73
CLK1-202ENST00000409403 VGFO15240 615 aaPredicted RBP10.46□□□□□ -0.74
CLK1-202ENST00000409403 C19orf67A6NJJ6 358 aa10.45□□□□□ -0.74
CLK1-202ENST00000409403 PYGBP11216 843 aa10.44□□□□□ -0.74
CLK1-202ENST00000409403 STK25O00506 426 aa10.41□□□□□ -0.74
CLK1-202ENST00000409403 TSPYL2Q9H2G4 693 aaPredicted RBP10.41□□□□□ -0.74
CLK1-202ENST00000409403 RB1CC1Q8TDY2 1594 aa10.4□□□□□ -0.74
CLK1-202ENST00000409403 SGIP1Q9BQI5 828 aa10.4□□□□□ -0.74
CLK1-202ENST00000409403 TSHZ2Q9NRE2 1034 aa10.38□□□□□ -0.75
CLK1-202ENST00000409403 KDM2AQ9Y2K7 1162 aa10.38□□□□□ -0.75
CLK1-202ENST00000409403 UNC13AQ9UPW8 1703 aa10.37□□□□□ -0.75
CLK1-202ENST00000409403 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.37□□□□□ -0.75
CLK1-202ENST00000409403 ZFP91Q96JP5 570 aaPredicted RBP10.37□□□□□ -0.75
CLK1-202ENST00000409403 NKX1-1Q15270 411 aaPredicted RBP10.36□□□□□ -0.75
CLK1-202ENST00000409403 BCL11BQ9C0K0 894 aaPredicted RBP10.35□□□□□ -0.75
CLK1-202ENST00000409403 STK24Q9Y6E0 443 aa10.34□□□□□ -0.75
CLK1-202ENST00000409403 CECR2Q9BXF3 1484 aa10.34□□□□□ -0.75
CLK1-202ENST00000409403 ZNF467Q7Z7K2 595 aaPredicted RBP10.34□□□□□ -0.75
CLK1-202ENST00000409403 BCANQ96GW7 911 aa10.33□□□□□ -0.76
CLK1-202ENST00000409403 CD44P16070 742 aaKnown RBP10.31□□□□□ -0.76
CLK1-202ENST00000409403 CCDC61Q9Y6R9 512 aa10.31□□□□□ -0.76
CLK1-202ENST00000409403 GTPBP6O43824 516 aaPredicted RBP10.31□□□□□ -0.76
CLK1-202ENST00000409403 PAK3O75914 559 aaPredicted RBP10.3□□□□□ -0.76
CLK1-202ENST00000409403 CC2D2AQ9P2K1 1620 aa10.29□□□□□ -0.76
CLK1-202ENST00000409403 RYDENQ9NUL5 291 aaKnown RBP10.28□□□□□ -0.76
CLK1-202ENST00000409403 GABBR2O75899 941 aa10.27□□□□□ -0.77
CLK1-202ENST00000409403 PDAP1Q13442 181 aaKnown RBP10.27□□□□□ -0.77
CLK1-202ENST00000409403 PCDHB8Q9UN66 801 aa10.25□□□□□ -0.77
CLK1-202ENST00000409403 PCDHB13Q9Y5F0 798 aa10.25□□□□□ -0.77
CLK1-202ENST00000409403 ZNF579Q8NAF0 562 aaKnown RBP10.25□□□□□ -0.77
CLK1-202ENST00000409403 BICRAQ9NZM4 1560 aa10.21□□□□□ -0.77
CLK1-202ENST00000409403 PSEN1P49768 467 aa10.2□□□□□ -0.78
CLK1-202ENST00000409403 ZRANB1Q9UGI0 708 aa10.19□□□□□ -0.78
CLK1-202ENST00000409403 KIF12Q96FN5 646 aa10.18□□□□□ -0.78
CLK1-202ENST00000409403 MAP3K13O43283 966 aa10.18□□□□□ -0.78
CLK1-202ENST00000409403 IFNL1Q8IU54 200 aa10.18□□□□□ -0.78
CLK1-202ENST00000409403 CUX2O14529 1486 aa10.17□□□□□ -0.78
CLK1-202ENST00000409403 LHX8Q68G74 356 aa10.13□□□□□ -0.79
CLK1-202ENST00000409403 CLCN6P51797 869 aa10.12□□□□□ -0.79
CLK1-202ENST00000409403 PHF12Q96QT6 1004 aa10.09□□□□□ -0.79
CLK1-202ENST00000409403 MFRPQ9BY79 579 aa10.09□□□□□ -0.79
CLK1-202ENST00000409403 CABP2Q9NPB3 220 aa10.08□□□□□ -0.8
CLK1-202ENST00000409403 NBR1Q14596 966 aa10.06□□□□□ -0.8
CLK1-202ENST00000409403 POTEIP0CG38 1075 aa10.06□□□□□ -0.8
CLK1-202ENST00000409403 EFCAB3Q8N7B9 438 aa10.06□□□□□ -0.8
CLK1-202ENST00000409403 NACADO15069 1562 aa10.05□□□□□ -0.8
CLK1-202ENST00000409403 SOX12O15370 315 aa10.05□□□□□ -0.8
CLK1-202ENST00000409403 GALR2O43603 387 aaPredicted RBP10.03□□□□□ -0.8
CLK1-202ENST00000409403 NLRP6P59044 892 aa10.03□□□□□ -0.8
CLK1-202ENST00000409403 FBXO22Q8NEZ5 403 aa10.02□□□□□ -0.81
CLK1-202ENST00000409403 DCBLD2Q96PD2 775 aa10.01□□□□□ -0.81
CLK1-202ENST00000409403 PRKCSHP14314 528 aaPredicted RBP10□□□□□ -0.81
CLK1-202ENST00000409403 CADPS2Q86UW7 1296 aa10□□□□□ -0.81
CLK1-202ENST00000409403 PHF8Q9UPP1 1060 aa10□□□□□ -0.81
CLK1-202ENST00000409403 EIF4G1Q04637 1599 aaKnown RBP10□□□□□ -0.81
CLK1-202ENST00000409403 MS4A3Q96HJ5 214 aa9.99□□□□□ -0.81
CLK1-202ENST00000409403 TMEM106CQ9BVX2 250 aa9.99□□□□□ -0.81
CLK1-202ENST00000409403 PPP1R37O75864 691 aa9.97□□□□□ -0.81
CLK1-202ENST00000409403 GOLGA2Q08379 1002 aa9.97□□□□□ -0.81
CLK1-202ENST00000409403 TPRNQ4KMQ1 711 aa9.97□□□□□ -0.81
CLK1-202ENST00000409403 P3H3Q8IVL6 736 aa9.97□□□□□ -0.81
CLK1-202ENST00000409403 WDR70Q9NW82 654 aa9.97□□□□□ -0.81
CLK1-202ENST00000409403 TRPC6Q9Y210 931 aa9.95□□□□□ -0.82
CLK1-202ENST00000409403 TIE1P35590 1138 aa9.92□□□□□ -0.82
CLK1-202ENST00000409403 MKRN3Q13064 507 aaKnown RBP9.91□□□□□ -0.82
CLK1-202ENST00000409403 MS4A4AQ96JQ5 239 aa9.9□□□□□ -0.82
CLK1-202ENST00000409403 TTLL13PA6NNM8 815 aa9.89□□□□□ -0.83
CLK1-202ENST00000409403 ERCC6Q03468 1493 aa9.88□□□□□ -0.83
CLK1-202ENST00000409403 KCNV2Q8TDN2 545 aa9.88□□□□□ -0.83
CLK1-202ENST00000409403 BMP2KQ9NSY1 1161 aaPredicted RBP9.86□□□□□ -0.83
CLK1-202ENST00000409403 ILDR1Q86SU0 546 aaPredicted RBP9.84□□□□□ -0.83
CLK1-202ENST00000409403 PELP1Q8IZL8 1130 aaKnown RBP9.83□□□□□ -0.84
CLK1-202ENST00000409403 ASTLQ6HA08 431 aaPredicted RBP9.83□□□□□ -0.84
CLK1-202ENST00000409403 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.82□□□□□ -0.845e-10■■□□□ 13.8
CLK1-202ENST00000409403 TRIM35Q9UPQ4 493 aa9.82□□□□□ -0.84
CLK1-202ENST00000409403 SHROOM4Q9ULL8 1493 aa9.82□□□□□ -0.84
CLK1-202ENST00000409403 NCKAP5LQ9HCH0 1330 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms