RNA–Protein interactions for RNA: ENST00000404424.5

CLIP4-204, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLIP4, Length 2,480 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-204ENST00000404424 SETD5Q9C0A6 1442 aa15.57■□□□□ 0.08
CLIP4-204ENST00000404424 DNMBPQ6XZF7 1577 aa15.56■□□□□ 0.08
CLIP4-204ENST00000404424 ITGAEP38570 1179 aa15.56■□□□□ 0.08
CLIP4-204ENST00000404424 ABCA10Q8WWZ4 1543 aa15.56■□□□□ 0.08
CLIP4-204ENST00000404424 MAPKBP1O60336 1514 aa15.54■□□□□ 0.08
CLIP4-204ENST00000404424 PHLDB1Q86UU1 1377 aa15.54■□□□□ 0.08
CLIP4-204ENST00000404424 EFCAB5A4FU69 1503 aa15.54■□□□□ 0.08
CLIP4-204ENST00000404424 PCF11O94913 1555 aaKnown RBP15.52■□□□□ 0.07
CLIP4-204ENST00000404424 AQRO60306 1485 aaKnown RBP eCLIP15.51■□□□□ 0.07
CLIP4-204ENST00000404424 FYCO1Q9BQS8 1478 aa15.51■□□□□ 0.07
CLIP4-204ENST00000404424 CUL7Q14999 1698 aa15.51■□□□□ 0.07
CLIP4-204ENST00000404424 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.51■□□□□ 0.07
CLIP4-204ENST00000404424 TOPBP1Q92547 1522 aa15.5■□□□□ 0.07
CLIP4-204ENST00000404424 POLA1P09884 1462 aaPredicted RBP15.5■□□□□ 0.07
CLIP4-204ENST00000404424 CASKIN1Q8WXD9 1431 aa15.49■□□□□ 0.07
CLIP4-204ENST00000404424 TIMELESSQ9UNS1 1208 aa15.48■□□□□ 0.07
CLIP4-204ENST00000404424 RAD54L2Q9Y4B4 1467 aa15.48■□□□□ 0.07
CLIP4-204ENST00000404424 FAM50AQ14320 339 aaKnown RBP15.46■□□□□ 0.07
CLIP4-204ENST00000404424 FHOD3Q2V2M9 1422 aa15.46■□□□□ 0.07
CLIP4-204ENST00000404424 CTTNBP2Q8WZ74 1663 aa15.45■□□□□ 0.06
CLIP4-204ENST00000404424 FMN1Q68DA7 1419 aa15.44■□□□□ 0.06
CLIP4-204ENST00000404424 P3H3Q8IVL6 736 aa15.44■□□□□ 0.06
CLIP4-204ENST00000404424 ATP1B4Q9UN42 357 aaPredicted RBP15.41■□□□□ 0.06
CLIP4-204ENST00000404424 LAMC3Q9Y6N6 1575 aa15.39■□□□□ 0.05
CLIP4-204ENST00000404424 WDR97A6NE52 1622 aa15.39■□□□□ 0.05
CLIP4-204ENST00000404424 MYT1Q01538 1121 aa15.38■□□□□ 0.05
CLIP4-204ENST00000404424 NESP48681 1621 aa15.38■□□□□ 0.05
CLIP4-204ENST00000404424 SNAPC4Q5SXM2 1469 aa15.37■□□□□ 0.05
CLIP4-204ENST00000404424 FGD6Q6ZV73 1430 aa15.36■□□□□ 0.05
CLIP4-204ENST00000404424 SIN3AQ96ST3 1273 aa15.35■□□□□ 0.05
CLIP4-204ENST00000404424 SAMD9Q5K651 1589 aa15.34■□□□□ 0.05
CLIP4-204ENST00000404424 URB2Q14146 1524 aaKnown RBP15.34■□□□□ 0.05
CLIP4-204ENST00000404424 ABCA5Q8WWZ7 1642 aa15.34■□□□□ 0.05
CLIP4-204ENST00000404424 MTUS2Q5JR59 1369 aa15.32■□□□□ 0.04
CLIP4-204ENST00000404424 THOC2Q8NI27 1593 aaKnown RBP15.32■□□□□ 0.04
CLIP4-204ENST00000404424 SUPT16HQ9Y5B9 1047 aaKnown RBP15.32■□□□□ 0.04
CLIP4-204ENST00000404424 PPP1R15AO75807 674 aaPredicted RBP15.32■□□□□ 0.04
CLIP4-204ENST00000404424 GAPVD1Q14C86 1478 aa15.31■□□□□ 0.04
CLIP4-204ENST00000404424 HFM1A2PYH4 1435 aa15.3■□□□□ 0.04
CLIP4-204ENST00000404424 PDS5BQ9NTI5 1447 aa15.29■□□□□ 0.04
CLIP4-204ENST00000404424 GRIN2BQ13224 1484 aa15.29■□□□□ 0.04
CLIP4-204ENST00000404424 UACAQ9BZF9 1416 aa15.28■□□□□ 0.04
CLIP4-204ENST00000404424 CCDC18Q5T9S5 1454 aa15.27■□□□□ 0.04
CLIP4-204ENST00000404424 TDRD9Q8NDG6 1382 aaKnown RBP15.27■□□□□ 0.04
CLIP4-204ENST00000404424 MYOM3Q5VTT5 1437 aa15.27■□□□□ 0.03
CLIP4-204ENST00000404424 DDX10Q13206 875 aaKnown RBP15.26■□□□□ 0.03
CLIP4-204ENST00000404424 EHBP1L1Q8N3D4 1523 aa15.26■□□□□ 0.03
CLIP4-204ENST00000404424 NCOA2Q15596 1464 aa15.26■□□□□ 0.03
CLIP4-204ENST00000404424 KIF21AQ7Z4S6 1674 aa15.25■□□□□ 0.03
CLIP4-204ENST00000404424 SUPT6HQ7KZ85 1726 aaKnown RBP15.25■□□□□ 0.03
CLIP4-204ENST00000404424 PTPN23Q9H3S7 1636 aa15.25■□□□□ 0.03
CLIP4-204ENST00000404424 TONSLQ96HA7 1378 aa15.24■□□□□ 0.03
CLIP4-204ENST00000404424 LRRIQ1Q96JM4 1722 aa15.24■□□□□ 0.03
CLIP4-204ENST00000404424 PTPRKQ15262 1439 aa15.23■□□□□ 0.03
CLIP4-204ENST00000404424 CCER2I3L3R5 266 aa15.22■□□□□ 0.03
CLIP4-204ENST00000404424 NAIPQ13075 1403 aa15.22■□□□□ 0.03
CLIP4-204ENST00000404424 KCNH8Q96L42 1107 aa15.22■□□□□ 0.03
CLIP4-204ENST00000404424 ARHGEF11O15085 1522 aa15.21■□□□□ 0.03
CLIP4-204ENST00000404424 UGGT2Q9NYU1 1516 aa15.2■□□□□ 0.02
CLIP4-204ENST00000404424 ANP32CO43423 234 aa15.18■□□□□ 0.02
CLIP4-204ENST00000404424 TARBP1Q13395 1621 aaKnown RBP15.18■□□□□ 0.02
CLIP4-204ENST00000404424 TCOF1Q13428 1488 aaKnown RBP15.17■□□□□ 0.02
CLIP4-204ENST00000404424 HECW1Q76N89 1606 aa15.16■□□□□ 0.02
CLIP4-204ENST00000404424 AKNAQ7Z591 1439 aa15.15■□□□□ 0.02
CLIP4-204ENST00000404424 MAGI3Q5TCQ9 1506 aa15.13■□□□□ 0.01
CLIP4-204ENST00000404424 HIRIP3Q9BW71 556 aaPredicted RBP15.12■□□□□ 0.01
CLIP4-204ENST00000404424 IQGAP2Q13576 1575 aa15.12■□□□□ 0.01
CLIP4-204ENST00000404424 GCC2Q8IWJ2 1684 aa15.12■□□□□ 0.01
CLIP4-204ENST00000404424 MIA2Q96PC5 1412 aa15.11■□□□□ 0.01
CLIP4-204ENST00000404424 PBRM1Q86U86 1689 aa15.11■□□□□ 0.01
CLIP4-204ENST00000404424 EPRSP07814 1512 aaKnown RBP15.1■□□□□ 0.01
CLIP4-204ENST00000404424 KDM5BQ9UGL1 1544 aa15.1■□□□□ 0.01
CLIP4-204ENST00000404424 ADAMTS12P58397 1594 aa15.08■□□□□ 0
CLIP4-204ENST00000404424 TSHZ2Q9NRE2 1034 aa15.06■□□□□ 0
CLIP4-204ENST00000404424 WDR62O43379 1518 aa15.05■□□□□ 0
CLIP4-204ENST00000404424 RRP7BPQ9NSQ0 103 aa15.05■□□□□ 0
CLIP4-204ENST00000404424 NEFLP07196 543 aa15.04■□□□□ -0
CLIP4-204ENST00000404424 FKBP8Q14318 412 aa15.04■□□□□ -0
CLIP4-204ENST00000404424 DENND4BO75064 1496 aaPredicted RBP15.03■□□□□ -0
CLIP4-204ENST00000404424 MRC2Q9UBG0 1479 aa15.02■□□□□ -0
CLIP4-204ENST00000404424 CHIC2Q9UKJ5 165 aa15.02■□□□□ -0
CLIP4-204ENST00000404424 TRIM52Q96A61 297 aa15.02□□□□□ -0.01
CLIP4-204ENST00000404424 CDK13Q14004 1512 aaKnown RBP15.01□□□□□ -0.01
CLIP4-204ENST00000404424 DNAJC5BQ9UF47 199 aa15.01□□□□□ -0.01
CLIP4-204ENST00000404424 ROCK1Q13464 1354 aa15.01□□□□□ -0.01
CLIP4-204ENST00000404424 MPHOSPH9Q99550 1183 aa15□□□□□ -0.01
CLIP4-204ENST00000404424 EIF4G2P78344 907 aaKnown RBP eCLIP14.99□□□□□ -0.01
CLIP4-204ENST00000404424 KDM6BO15054 1643 aa14.98□□□□□ -0.01
CLIP4-204ENST00000404424 HSPA5P11021 654 aaKnown RBP14.98□□□□□ -0.01
CLIP4-204ENST00000404424 IFT140Q96RY7 1462 aa14.98□□□□□ -0.01
CLIP4-204ENST00000404424 KIAA0586Q9BVV6 1533 aa14.97□□□□□ -0.01
CLIP4-204ENST00000404424 DAPK1P53355 1430 aa14.96□□□□□ -0.01
CLIP4-204ENST00000404424 WASHC2AQ641Q2 1341 aa14.96□□□□□ -0.01
CLIP4-204ENST00000404424 BCANQ96GW7 911 aa14.95□□□□□ -0.02
CLIP4-204ENST00000404424 KIAA0556O60303 1618 aa14.95□□□□□ -0.02
CLIP4-204ENST00000404424 DNMT1P26358 1616 aaKnown RBP14.94□□□□□ -0.02
CLIP4-204ENST00000404424 CDK11AQ9UQ88 783 aaPredicted RBP14.94□□□□□ -0.02
CLIP4-204ENST00000404424 DISP1Q96F81 1524 aa14.93□□□□□ -0.02
CLIP4-204ENST00000404424 L3MBTL2Q969R5 705 aa14.93□□□□□ -0.02
CLIP4-204ENST00000404424 ANKRD30BQ9BXX2 1392 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms