RNA–Protein interactions for RNA: ENST00000397149.3

SMU1-201, Transcript of SMU1, DNA replication regulator and spliceosomal factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMU1, Length 7,122 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMU1-201ENST00000397149 NAP1L5Q96NT1 182 aaPredicted RBP16.38■□□□□ 0.21
SMU1-201ENST00000397149 WDR43Q15061 677 aaKnown RBP eCLIP16.38■□□□□ 0.21
SMU1-201ENST00000397149 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.35■□□□□ 0.21
SMU1-201ENST00000397149 TMC1Q8TDI8 760 aa16.34■□□□□ 0.21
SMU1-201ENST00000397149 SENP3-EIF4A1A0A087X0R7 540 aa16.34■□□□□ 0.21
SMU1-201ENST00000397149 ACIN1Q9UKV3 1341 aaKnown RBP16.34■□□□□ 0.21
SMU1-201ENST00000397149 NAP1L2Q9ULW6 460 aaPredicted RBP16.33■□□□□ 0.21
SMU1-201ENST00000397149 GOLGA6L22H0YM25 854 aa16.33■□□□□ 0.21
SMU1-201ENST00000397149 PDE4CQ08493 712 aa16.31■□□□□ 0.2
SMU1-201ENST00000397149 ISY1Q9ULR0 285 aaKnown RBP16.29■□□□□ 0.2
SMU1-201ENST00000397149 DDX10Q13206 875 aaKnown RBP16.28■□□□□ 0.2
SMU1-201ENST00000397149 ARID4BQ4LE39 1312 aaPredicted RBP16.28■□□□□ 0.2
SMU1-201ENST00000397149 KDM2AQ9Y2K7 1162 aa16.27■□□□□ 0.19
SMU1-201ENST00000397149 BECN1Q14457 450 aa16.26■□□□□ 0.19
SMU1-201ENST00000397149 ERICH6BQ5W0A0 696 aa16.26■□□□□ 0.19
SMU1-201ENST00000397149 ANO8Q9HCE9 1232 aaPredicted RBP16.24■□□□□ 0.19
SMU1-201ENST00000397149 FBXO3Q9UK99 471 aa16.24■□□□□ 0.19
SMU1-201ENST00000397149 FGD1P98174 961 aa16.22■□□□□ 0.19
SMU1-201ENST00000397149 ARID3AQ99856 593 aa16.21■□□□□ 0.19
SMU1-201ENST00000397149 PPM1GO15355 546 aaPredicted RBP16.2■□□□□ 0.18
SMU1-201ENST00000397149 LAS1LQ9Y4W2 734 aaKnown RBP16.18■□□□□ 0.18
SMU1-201ENST00000397149 GOLGA6L6A8MZA4 724 aa16.18■□□□□ 0.18
SMU1-201ENST00000397149 LMOD2Q6P5Q4 547 aa16.17■□□□□ 0.18
SMU1-201ENST00000397149 GOLGA2Q08379 1002 aa16.17■□□□□ 0.18
SMU1-201ENST00000397149 CASC1Q6TDU7 716 aa16.17■□□□□ 0.18
SMU1-201ENST00000397149 NOC3LQ8WTT2 800 aaKnown RBP16.15■□□□□ 0.18
SMU1-201ENST00000397149 TONSLQ96HA7 1378 aa16.15■□□□□ 0.18
SMU1-201ENST00000397149 MRS2Q9HD23 443 aa16.14■□□□□ 0.17
SMU1-201ENST00000397149 PNNQ9H307 717 aaKnown RBP16.14■□□□□ 0.17
SMU1-201ENST00000397149 NPM1P06748 294 aaKnown RBP eCLIP16.13■□□□□ 0.17
SMU1-201ENST00000397149 DDRGK1Q96HY6 314 aa16.13■□□□□ 0.17
SMU1-201ENST00000397149 KCNJ4P48050 445 aa16.12■□□□□ 0.17
SMU1-201ENST00000397149 ANP32EQ9BTT0 268 aa16.11■□□□□ 0.17
SMU1-201ENST00000397149 DRC7Q8IY82 874 aa16.11■□□□□ 0.17
SMU1-201ENST00000397149 OS9Q13438 667 aaPredicted RBP16.11■□□□□ 0.17
SMU1-201ENST00000397149 PPP1R15AO75807 674 aaPredicted RBP16.1■□□□□ 0.17
SMU1-201ENST00000397149 HIRIP3Q9BW71 556 aaPredicted RBP16.1■□□□□ 0.17
SMU1-201ENST00000397149 CHIC2Q9UKJ5 165 aa16.1■□□□□ 0.17
SMU1-201ENST00000397149 NRDCO43847 1150 aa16.07■□□□□ 0.16
SMU1-201ENST00000397149 PABPN1Q86U42 306 aaKnown RBP eCLIP16.06■□□□□ 0.16
SMU1-201ENST00000397149 NEUROD2Q15784 382 aa16.06■□□□□ 0.16
SMU1-201ENST00000397149 FTSJ3Q8IY81 847 aaKnown RBP16.06■□□□□ 0.16
SMU1-201ENST00000397149 GOLGA6L4A6NEF3 574 aa16.06■□□□□ 0.16
SMU1-201ENST00000397149 HSP90AB1P08238 724 aaKnown RBP16.04■□□□□ 0.16
SMU1-201ENST00000397149 CHAF1AQ13111 956 aaPredicted RBP16.04■□□□□ 0.16
SMU1-201ENST00000397149 A0A0U1RQG5 324 aaPredicted RBP16.04■□□□□ 0.16
SMU1-201ENST00000397149 KRI1Q8N9T8 703 aaKnown RBP16.03■□□□□ 0.16
SMU1-201ENST00000397149 SPRYD3Q8NCJ5 442 aa16.02■□□□□ 0.16
SMU1-201ENST00000397149 KIAA2012Q0VF49 1180 aa16.02■□□□□ 0.15
SMU1-201ENST00000397149 RGS3P49796 1198 aa16■□□□□ 0.15
SMU1-201ENST00000397149 TNNT3P45378 269 aaPredicted RBP16■□□□□ 0.15
SMU1-201ENST00000397149 WWC1Q8IX03 1113 aa15.99■□□□□ 0.15
SMU1-201ENST00000397149 GNL2Q13823 731 aaKnown RBP15.98■□□□□ 0.15
SMU1-201ENST00000397149 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.97■□□□□ 0.15
SMU1-201ENST00000397149 MSNP26038 577 aaKnown RBP15.95■□□□□ 0.14
SMU1-201ENST00000397149 L1TD1Q5T7N2 865 aaKnown RBP15.94■□□□□ 0.14
SMU1-201ENST00000397149 FRAT1Q92837 279 aaPredicted RBP15.94■□□□□ 0.14
SMU1-201ENST00000397149 PATL2C9JE40 543 aaKnown RBP15.93■□□□□ 0.14
SMU1-201ENST00000397149 CREBRFQ8IUR6 639 aa15.91■□□□□ 0.14
SMU1-201ENST00000397149 SOX12O15370 315 aa15.9■□□□□ 0.14
SMU1-201ENST00000397149 RGL3Q3MIN7 710 aa15.87■□□□□ 0.13
SMU1-201ENST00000397149 CFAP53Q96M91 514 aa15.86■□□□□ 0.13
SMU1-201ENST00000397149 ZNF330Q9Y3S2 320 aaPredicted RBP15.85■□□□□ 0.13
SMU1-201ENST00000397149 APBB1O00213 710 aa15.84■□□□□ 0.13
SMU1-201ENST00000397149 MAPK8IP3Q9UPT6 1336 aa15.84■□□□□ 0.13
SMU1-201ENST00000397149 HSP90B1P14625 803 aaKnown RBP15.79■□□□□ 0.12
SMU1-201ENST00000397149 U2SURPO15042 1029 aaKnown RBP15.79■□□□□ 0.12
SMU1-201ENST00000397149 GOLGA6L1Q8N7Z2 621 aa15.79■□□□□ 0.12
SMU1-201ENST00000397149 TSPY4P0CV99 314 aa15.78■□□□□ 0.12
SMU1-201ENST00000397149 TSPY10P0CW01 314 aa15.78■□□□□ 0.12
SMU1-201ENST00000397149 HSCBQ8IWL3 235 aa15.78■□□□□ 0.12
SMU1-201ENST00000397149 VPS53Q5VIR6 699 aa15.78■□□□□ 0.12
SMU1-201ENST00000397149 CALRP27797 417 aaKnown RBP15.77■□□□□ 0.12
SMU1-201ENST00000397149 CEP89Q96ST8 783 aa15.77■□□□□ 0.12
SMU1-201ENST00000397149 KCNH8Q96L42 1107 aa15.77■□□□□ 0.11
SMU1-201ENST00000397149 SUPT16HQ9Y5B9 1047 aaKnown RBP15.77■□□□□ 0.11
SMU1-201ENST00000397149 GZF1Q9H116 711 aaPredicted RBP15.77■□□□□ 0.11
SMU1-201ENST00000397149 RASSF8Q8NHQ8 419 aa15.75■□□□□ 0.11
SMU1-201ENST00000397149 KNSTRNQ9Y448 316 aa15.74■□□□□ 0.11
SMU1-201ENST00000397149 CNKSR2Q8WXI2 1034 aa15.73■□□□□ 0.11
SMU1-201ENST00000397149 MCCP23508 829 aa15.72■□□□□ 0.11
SMU1-201ENST00000397149 MIER1Q8N108 512 aa15.71■□□□□ 0.11
SMU1-201ENST00000397149 POGKQ9P215 609 aa15.71■□□□□ 0.11
SMU1-201ENST00000397149 NOP58Q9Y2X3 529 aaKnown RBP15.71■□□□□ 0.11
SMU1-201ENST00000397149 G3V3G9 751 aa15.7■□□□□ 0.1
SMU1-201ENST00000397149 DCAF8Q5TAQ9 597 aa15.7■□□□□ 0.1
SMU1-201ENST00000397149 TMX4Q9H1E5 349 aaPredicted RBP15.7■□□□□ 0.1
SMU1-201ENST00000397149 PES1O00541 588 aaKnown RBP15.69■□□□□ 0.1
SMU1-201ENST00000397149 TAF7LQ5H9L4 462 aa15.69■□□□□ 0.1
SMU1-201ENST00000397149 NUDCQ9Y266 331 aa15.68■□□□□ 0.1
SMU1-201ENST00000397149 EIF4G2P78344 907 aaKnown RBP eCLIP15.67■□□□□ 0.1
SMU1-201ENST00000397149 RRP7BPQ9NSQ0 103 aa15.67■□□□□ 0.1
SMU1-201ENST00000397149 CC2D1BQ5T0F9 858 aaKnown RBP15.67■□□□□ 0.1
SMU1-201ENST00000397149 KIAA1211Q6ZU35 1233 aa15.66■□□□□ 0.1
SMU1-201ENST00000397149 CHMP3Q9Y3E7 222 aa15.65■□□□□ 0.1
SMU1-201ENST00000397149 MARCH6O60337 910 aa15.65■□□□□ 0.1
SMU1-201ENST00000397149 CCDC9Q9Y3X0 531 aaKnown RBP15.65■□□□□ 0.1
SMU1-201ENST00000397149 PTMSP20962 102 aa15.64■□□□□ 0.09
SMU1-201ENST00000397149 SETQ01105 290 aaPredicted RBP15.64■□□□□ 0.09
SMU1-201ENST00000397149 TPM4P67936 248 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms