RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 PLCB2Q00722 1185 aa17.43■□□□□ 0.38
USP49-203ENST00000394253 TULP1O00294 542 aaPredicted RBP17.39■□□□□ 0.37
USP49-203ENST00000394253 DRC7Q8IY82 874 aa17.38■□□□□ 0.37
USP49-203ENST00000394253 PNNQ9H307 717 aaKnown RBP17.37■□□□□ 0.37
USP49-203ENST00000394253 NOP58Q9Y2X3 529 aaKnown RBP17.36■□□□□ 0.37
USP49-203ENST00000394253 GOLGA6L4A6NEF3 574 aa17.34■□□□□ 0.37
USP49-203ENST00000394253 ESF1Q9H501 851 aaKnown RBP17.32■□□□□ 0.36
USP49-203ENST00000394253 HSP90AB1P08238 724 aaKnown RBP17.32■□□□□ 0.36
USP49-203ENST00000394253 SALL2Q9Y467 1007 aaPredicted RBP17.31■□□□□ 0.36
USP49-203ENST00000394253 A0A0U1RQG5 324 aaPredicted RBP17.3■□□□□ 0.36
USP49-203ENST00000394253 FTSJ3Q8IY81 847 aaKnown RBP17.28■□□□□ 0.36
USP49-203ENST00000394253 TPRNQ4KMQ1 711 aa17.28■□□□□ 0.36
USP49-203ENST00000394253 CHMP4BQ9H444 224 aaKnown RBP17.27■□□□□ 0.35
USP49-203ENST00000394253 FGD1P98174 961 aa17.26■□□□□ 0.35
USP49-203ENST00000394253 MRS2Q9HD23 443 aa17.26■□□□□ 0.35
USP49-203ENST00000394253 STAG3Q9UJ98 1225 aa17.26■□□□□ 0.35
USP49-203ENST00000394253 CLSTN1O94985 981 aa17.22■□□□□ 0.35
USP49-203ENST00000394253 NCBP3Q53F19 620 aaKnown RBP17.22■□□□□ 0.35
USP49-203ENST00000394253 HSCBQ8IWL3 235 aa17.22■□□□□ 0.35
USP49-203ENST00000394253 CFAP44Q96MT7 982 aa17.22■□□□□ 0.35
USP49-203ENST00000394253 DDX10Q13206 875 aaKnown RBP17.21■□□□□ 0.35
USP49-203ENST00000394253 LAS1LQ9Y4W2 734 aaKnown RBP17.21■□□□□ 0.35
USP49-203ENST00000394253 SYAP1Q96A49 352 aaPredicted RBP17.19■□□□□ 0.34
USP49-203ENST00000394253 ARID4BQ4LE39 1312 aaPredicted RBP17.18■□□□□ 0.34
USP49-203ENST00000394253 SCAF1Q9H7N4 1312 aaKnown RBP17.18■□□□□ 0.34
USP49-203ENST00000394253 DEKP35659 375 aaKnown RBP17.17■□□□□ 0.34
USP49-203ENST00000394253 HSP90AA2PQ14568 343 aaPredicted RBP17.17■□□□□ 0.34
USP49-203ENST00000394253 MCCP23508 829 aa17.16■□□□□ 0.34
USP49-203ENST00000394253 PRM3Q9NNZ6 103 aa17.15■□□□□ 0.34
USP49-203ENST00000394253 KCNJ4P48050 445 aa17.15■□□□□ 0.34
USP49-203ENST00000394253 TPM4P67936 248 aa17.14■□□□□ 0.33
USP49-203ENST00000394253 IRX6P78412 446 aaPredicted RBP17.14■□□□□ 0.33
USP49-203ENST00000394253 GBP4Q96PP9 640 aa17.12■□□□□ 0.33
USP49-203ENST00000394253 CCDC34Q96HJ3 373 aa17.11■□□□□ 0.33
USP49-203ENST00000394253 RSPH6AQ9H0K4 717 aa17.11■□□□□ 0.33
USP49-203ENST00000394253 GNL2Q13823 731 aaKnown RBP17.11■□□□□ 0.33
USP49-203ENST00000394253 MS4A1P11836 297 aa17.1■□□□□ 0.33
USP49-203ENST00000394253 HTATSF1O43719 755 aaKnown RBP17.09■□□□□ 0.33
USP49-203ENST00000394253 ARID3AQ99856 593 aa17.08■□□□□ 0.33
USP49-203ENST00000394253 GOLGA6L3A6NEY3 463 aa17.08■□□□□ 0.32
USP49-203ENST00000394253 NAP1L2Q9ULW6 460 aaPredicted RBP17.07■□□□□ 0.32
USP49-203ENST00000394253 GPS2Q13227 327 aa17.07■□□□□ 0.32
USP49-203ENST00000394253 RRP12Q5JTH9 1297 aaKnown RBP17.07■□□□□ 0.32
USP49-203ENST00000394253 A0A0G2JS52 829 aa17.07■□□□□ 0.32
USP49-203ENST00000394253 GOLGA2Q08379 1002 aa17.06■□□□□ 0.32
USP49-203ENST00000394253 PHF14O94880 888 aa17.06■□□□□ 0.32
USP49-203ENST00000394253 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.06■□□□□ 0.32
USP49-203ENST00000394253 APPP05067 770 aa17.05■□□□□ 0.32
USP49-203ENST00000394253 CFAP53Q96M91 514 aa17.04■□□□□ 0.32
USP49-203ENST00000394253 NOM1Q5C9Z4 860 aaKnown RBP17.03■□□□□ 0.32
USP49-203ENST00000394253 CHGAP10645 457 aaKnown RBP17.03■□□□□ 0.32
USP49-203ENST00000394253 PPP4R2Q9NY27 417 aa17.01■□□□□ 0.31
USP49-203ENST00000394253 CCDC70Q6NSX1 233 aa17■□□□□ 0.31
USP49-203ENST00000394253 OS9Q13438 667 aaPredicted RBP17■□□□□ 0.31
USP49-203ENST00000394253 ZNF777Q9ULD5 760 aaPredicted RBP17■□□□□ 0.31
USP49-203ENST00000394253 CEP89Q96ST8 783 aa16.99■□□□□ 0.31
USP49-203ENST00000394253 TEX35Q5T0J7 233 aa16.99■□□□□ 0.31
USP49-203ENST00000394253 CSPP1Q1MSJ5 1256 aa16.98■□□□□ 0.31
USP49-203ENST00000394253 TAOK2Q9UL54 1235 aa16.98■□□□□ 0.31
USP49-203ENST00000394253 CCDC180Q9P1Z9 1646 aa16.98■□□□□ 0.31
USP49-203ENST00000394253 DCAF1Q9Y4B6 1507 aa16.98■□□□□ 0.31
USP49-203ENST00000394253 TPM3P06753 285 aa16.98■□□□□ 0.31
USP49-203ENST00000394253 RGS3P49796 1198 aa16.95■□□□□ 0.3
USP49-203ENST00000394253 HMMRO75330 724 aa16.94■□□□□ 0.3
USP49-203ENST00000394253 NPHP1O15259 732 aa16.94■□□□□ 0.3
USP49-203ENST00000394253 CDCA8Q53HL2 280 aa16.94■□□□□ 0.3
USP49-203ENST00000394253 ZNF771Q7L3S4 317 aaPredicted RBP16.94■□□□□ 0.3
USP49-203ENST00000394253 KAT6BQ8WYB5 2073 aa16.93■□□□□ 0.3
USP49-203ENST00000394253 EIF4G2P78344 907 aaKnown RBP eCLIP16.92■□□□□ 0.3
USP49-203ENST00000394253 KIAA1211Q6ZU35 1233 aa16.91■□□□□ 0.3
USP49-203ENST00000394253 CALD1Q05682 793 aaKnown RBP16.91■□□□□ 0.3
USP49-203ENST00000394253 SUPT16HQ9Y5B9 1047 aaKnown RBP16.9■□□□□ 0.3
USP49-203ENST00000394253 FBLN2P98095 1184 aa16.89■□□□□ 0.29
USP49-203ENST00000394253 KNSTRNQ9Y448 316 aa16.89■□□□□ 0.29
USP49-203ENST00000394253 STK11IPQ8N1F8 1099 aa16.88■□□□□ 0.29
USP49-203ENST00000394253 MAPK8IP3Q9UPT6 1336 aa16.88■□□□□ 0.29
USP49-203ENST00000394253 TSR1Q2NL82 804 aaKnown RBP16.87■□□□□ 0.29
USP49-203ENST00000394253 VSIG10Q8N0Z9 540 aa16.87■□□□□ 0.29
USP49-203ENST00000394253 ZBTB7CA1YPR0 619 aa16.86■□□□□ 0.29
USP49-203ENST00000394253 PATL2C9JE40 543 aaKnown RBP16.86■□□□□ 0.29
USP49-203ENST00000394253 MIER1Q8N108 512 aa16.86■□□□□ 0.29
USP49-203ENST00000394253 HSP90B1P14625 803 aaKnown RBP16.85■□□□□ 0.29
USP49-203ENST00000394253 C14orf37Q86TY3 774 aa16.84■□□□□ 0.29
USP49-203ENST00000394253 CCDC191Q8NCU4 936 aa16.84■□□□□ 0.29
USP49-203ENST00000394253 MAP7D2Q96T17 732 aa16.83■□□□□ 0.28
USP49-203ENST00000394253 GZF1Q9H116 711 aaPredicted RBP16.82■□□□□ 0.28
USP49-203ENST00000394253 CWC15Q9P013 229 aaKnown RBP16.81■□□□□ 0.28
USP49-203ENST00000394253 TPM1P09493 284 aa16.8■□□□□ 0.28
USP49-203ENST00000394253 CDR1P51861 262 aa16.8■□□□□ 0.28
USP49-203ENST00000394253 HAP1P54257 671 aaPredicted RBP16.79■□□□□ 0.28
USP49-203ENST00000394253 NUDCQ9Y266 331 aa16.79■□□□□ 0.28
USP49-203ENST00000394253 RDXP35241 583 aaKnown RBP16.79■□□□□ 0.28
USP49-203ENST00000394253 DCTN1Q14203 1278 aa16.77■□□□□ 0.28
USP49-203ENST00000394253 ISY1Q9ULR0 285 aaKnown RBP16.77■□□□□ 0.28
USP49-203ENST00000394253 FRAT1Q92837 279 aaPredicted RBP16.77■□□□□ 0.28
USP49-203ENST00000394253 MTERF4Q7Z6M4 381 aaKnown RBP16.77■□□□□ 0.28
USP49-203ENST00000394253 KDM2AQ9Y2K7 1162 aa16.77■□□□□ 0.28
USP49-203ENST00000394253 SPRYD3Q8NCJ5 442 aa16.77■□□□□ 0.27
USP49-203ENST00000394253 AK7Q96M32 723 aa16.77■□□□□ 0.27
USP49-203ENST00000394253 DDX11L8A8MPP1 907 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms