RNA–Protein interactions for RNA: ENST00000392770.6

SCN3B-202, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 6,061 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-202ENST00000392770 KDM2AQ9Y2K7 1162 aa22.73■■□□□ 1.23
SCN3B-202ENST00000392770 FHAD1B1AJZ9 1412 aa22.71■■□□□ 1.23
SCN3B-202ENST00000392770 PDS5BQ9NTI5 1447 aa22.69■■□□□ 1.22
SCN3B-202ENST00000392770 CANXP27824 592 aaKnown RBP22.69■■□□□ 1.22
SCN3B-202ENST00000392770 PLPPR3Q6T4P5 718 aa22.68■■□□□ 1.22
SCN3B-202ENST00000392770 CFDP1Q9UEE9 299 aaPredicted RBP22.68■■□□□ 1.22
SCN3B-202ENST00000392770 NEFMP07197 916 aa22.67■■□□□ 1.22
SCN3B-202ENST00000392770 HIRIP3Q9BW71 556 aaPredicted RBP22.65■■□□□ 1.22
SCN3B-202ENST00000392770 FAM9BQ8IZU0 186 aa22.62■■□□□ 1.21
SCN3B-202ENST00000392770 VPS8Q8N3P4 1428 aa22.61■■□□□ 1.21
SCN3B-202ENST00000392770 HNRNPUQ00839 825 aaKnown RBP eCLIP22.6■■□□□ 1.21
SCN3B-202ENST00000392770 CADPSQ9ULU8 1353 aa22.6■■□□□ 1.21
SCN3B-202ENST00000392770 SLC24A1O60721 1099 aa22.59■■□□□ 1.21
SCN3B-202ENST00000392770 CCNB3Q8WWL7 1395 aa22.57■■□□□ 1.2
SCN3B-202ENST00000392770 MIER1Q8N108 512 aa22.55■■□□□ 1.2
SCN3B-202ENST00000392770 EIF4G2P78344 907 aaKnown RBP eCLIP22.54■■□□□ 1.2
SCN3B-202ENST00000392770 TDRD9Q8NDG6 1382 aaKnown RBP22.54■■□□□ 1.2
SCN3B-202ENST00000392770 ZBTB47Q9UFB7 747 aaPredicted RBP22.52■■□□□ 1.19
SCN3B-202ENST00000392770 RTL5Q5HYW3 569 aaPredicted RBP22.5■■□□□ 1.19
SCN3B-202ENST00000392770 FKBP8Q14318 412 aa22.5■■□□□ 1.19
SCN3B-202ENST00000392770 TMC1Q8TDI8 760 aa22.48■■□□□ 1.19
SCN3B-202ENST00000392770 ARHGAP35Q9NRY4 1499 aa22.47■■□□□ 1.19
SCN3B-202ENST00000392770 KANK4Q5T7N3 995 aaPredicted RBP22.46■■□□□ 1.19
SCN3B-202ENST00000392770 MRS2Q9HD23 443 aa22.44■■□□□ 1.18
SCN3B-202ENST00000392770 SALL2Q9Y467 1007 aaPredicted RBP22.44■■□□□ 1.18
SCN3B-202ENST00000392770 SIN3AQ96ST3 1273 aa22.44■■□□□ 1.18
SCN3B-202ENST00000392770 RGL3Q3MIN7 710 aa22.44■■□□□ 1.18
SCN3B-202ENST00000392770 RAPGEF2Q9Y4G8 1499 aa22.43■■□□□ 1.18
SCN3B-202ENST00000392770 BCL11AQ9H165 835 aa22.42■■□□□ 1.18
SCN3B-202ENST00000392770 FANCD2Q9BXW9 1451 aa22.39■■□□□ 1.18
SCN3B-202ENST00000392770 RUSC2Q8N2Y8 1516 aa22.39■■□□□ 1.17
SCN3B-202ENST00000392770 SENP3Q9H4L4 574 aaPredicted RBP22.39■■□□□ 1.17
SCN3B-202ENST00000392770 FMN1Q68DA7 1419 aa22.37■■□□□ 1.17
SCN3B-202ENST00000392770 WDR43Q15061 677 aaKnown RBP eCLIP22.36■■□□□ 1.17
SCN3B-202ENST00000392770 CARMIL2Q6F5E8 1435 aa22.36■■□□□ 1.17
SCN3B-202ENST00000392770 SETD5Q9C0A6 1442 aa22.34■■□□□ 1.17
SCN3B-202ENST00000392770 FHOD3Q2V2M9 1422 aa22.3■■□□□ 1.16
SCN3B-202ENST00000392770 CARD11Q9BXL7 1154 aa22.29■■□□□ 1.16
SCN3B-202ENST00000392770 PPP1R15AO75807 674 aaPredicted RBP22.28■■□□□ 1.16
SCN3B-202ENST00000392770 ARID4BQ4LE39 1312 aaPredicted RBP22.22■■□□□ 1.15
SCN3B-202ENST00000392770 ANP32AP39687 249 aaKnown RBP22.21■■□□□ 1.15
SCN3B-202ENST00000392770 NPM2Q86SE8 214 aaKnown RBP22.2■■□□□ 1.14
SCN3B-202ENST00000392770 NCAPD3P42695 1498 aa22.18■■□□□ 1.14
SCN3B-202ENST00000392770 FGD5Q6ZNL6 1462 aa22.18■■□□□ 1.14
SCN3B-202ENST00000392770 RAB3GAP2Q9H2M9 1393 aa22.17■■□□□ 1.14
SCN3B-202ENST00000392770 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.15■■□□□ 1.14
SCN3B-202ENST00000392770 IRX6P78412 446 aaPredicted RBP22.14■■□□□ 1.13
SCN3B-202ENST00000392770 CDCA8Q53HL2 280 aa22.14■■□□□ 1.13
SCN3B-202ENST00000392770 SCAF1Q9H7N4 1312 aaKnown RBP22.14■■□□□ 1.13
SCN3B-202ENST00000392770 KANK1Q14678 1352 aa22.14■■□□□ 1.13
SCN3B-202ENST00000392770 CCDC136Q96JN2 1154 aa22.12■■□□□ 1.13
SCN3B-202ENST00000392770 DCAF11Q8TEB1 546 aa22.11■■□□□ 1.13
SCN3B-202ENST00000392770 KNSTRNQ9Y448 316 aa22.11■■□□□ 1.13
SCN3B-202ENST00000392770 TIMELESSQ9UNS1 1208 aa22.1■■□□□ 1.13
SCN3B-202ENST00000392770 RAD54L2Q9Y4B4 1467 aa22.09■■□□□ 1.13
SCN3B-202ENST00000392770 FOXD1Q16676 465 aa22.09■■□□□ 1.13
SCN3B-202ENST00000392770 CCDC18Q5T9S5 1454 aa22.06■■□□□ 1.12
SCN3B-202ENST00000392770 PKD2Q13563 968 aa22.06■■□□□ 1.12
SCN3B-202ENST00000392770 GAPVD1Q14C86 1478 aa22.04■■□□□ 1.12
SCN3B-202ENST00000392770 SENP3-EIF4A1A0A087X0R7 540 aa22.04■■□□□ 1.12
SCN3B-202ENST00000392770 MPHOSPH9Q99550 1183 aa22.03■■□□□ 1.12
SCN3B-202ENST00000392770 IGF1RP08069 1367 aa22.03■■□□□ 1.12
SCN3B-202ENST00000392770 ANKRD30AQ9BXX3 1397 aa22.03■■□□□ 1.12
SCN3B-202ENST00000392770 JPH4Q96JJ6 628 aa22.02■■□□□ 1.12
SCN3B-202ENST00000392770 C14orf37Q86TY3 774 aa22■■□□□ 1.11
SCN3B-202ENST00000392770 ZBTB7CA1YPR0 619 aa22■■□□□ 1.11
SCN3B-202ENST00000392770 HSPA5P11021 654 aaKnown RBP21.98■■□□□ 1.11
SCN3B-202ENST00000392770 CFAP53Q96M91 514 aa21.98■■□□□ 1.11
SCN3B-202ENST00000392770 SYNJ1O43426 1573 aa21.98■■□□□ 1.11
SCN3B-202ENST00000392770 EFCAB2Q5VUJ9 269 aa21.97■■□□□ 1.11
SCN3B-202ENST00000392770 POGKQ9P215 609 aa21.97■■□□□ 1.11
SCN3B-202ENST00000392770 NUP155O75694 1391 aa21.96■■□□□ 1.11
SCN3B-202ENST00000392770 HNRNPMP52272 730 aaKnown RBP eCLIP21.96■■□□□ 1.11
SCN3B-202ENST00000392770 CC2D1BQ5T0F9 858 aaKnown RBP21.96■■□□□ 1.11
SCN3B-202ENST00000392770 PLEKHG5O94827 1062 aa21.96■■□□□ 1.11
SCN3B-202ENST00000392770 TMF1P82094 1093 aa21.94■■□□□ 1.1
SCN3B-202ENST00000392770 CC2D2AQ9P2K1 1620 aa21.94■■□□□ 1.1
SCN3B-202ENST00000392770 UPF2Q9HAU5 1272 aaKnown RBP21.93■■□□□ 1.1
SCN3B-202ENST00000392770 GGT6Q6P531 493 aa21.92■■□□□ 1.1
SCN3B-202ENST00000392770 MLECQ14165 292 aa21.92■■□□□ 1.1
SCN3B-202ENST00000392770 CFTRP13569 1480 aa21.92■■□□□ 1.1
SCN3B-202ENST00000392770 KIF21BO75037 1637 aa21.9■■□□□ 1.1
SCN3B-202ENST00000392770 HMGXB3Q12766 1538 aa21.9■■□□□ 1.1
SCN3B-202ENST00000392770 PPM1GO15355 546 aaPredicted RBP21.9■■□□□ 1.1
SCN3B-202ENST00000392770 SUPT16HQ9Y5B9 1047 aaKnown RBP21.87■■□□□ 1.09
SCN3B-202ENST00000392770 AQRO60306 1485 aaKnown RBP eCLIP21.86■■□□□ 1.09
SCN3B-202ENST00000392770 TNNT2P45379 298 aaPredicted RBP21.86■■□□□ 1.09
SCN3B-202ENST00000392770 TRHP20396 242 aaPredicted RBP21.84■■□□□ 1.09
SCN3B-202ENST00000392770 ROCK2O75116 1388 aaKnown RBP21.84■■□□□ 1.09
SCN3B-202ENST00000392770 NESP48681 1621 aa21.84■■□□□ 1.09
SCN3B-202ENST00000392770 PTPRGP23470 1445 aa21.82■■□□□ 1.08
SCN3B-202ENST00000392770 TOP2BQ02880 1626 aa21.82■■□□□ 1.08
SCN3B-202ENST00000392770 HSP90AA1P07900 732 aaKnown RBP21.82■■□□□ 1.08
SCN3B-202ENST00000392770 DHX57Q6P158 1386 aaKnown RBP21.81■■□□□ 1.08
SCN3B-202ENST00000392770 ERICH3Q5RHP9 1530 aa21.8■■□□□ 1.08
SCN3B-202ENST00000392770 NEUROD2Q15784 382 aa21.8■■□□□ 1.08
SCN3B-202ENST00000392770 RSPH4AQ5TD94 716 aa21.8■■□□□ 1.08
SCN3B-202ENST00000392770 MYH16Q9H6N6 1097 aa21.8■■□□□ 1.08
SCN3B-202ENST00000392770 BICRAQ9NZM4 1560 aa21.79■■□□□ 1.08
SCN3B-202ENST00000392770 CCER2I3L3R5 266 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms