RNA–Protein interactions for RNA: ENST00000390462.1

TRAV35-201, Transcript of T cell receptor alpha variable 35, humanhuman

BASIC

Gene TRAV35, Length 330 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV35-201ENST00000390462 SSUH2Q9Y2M2 353 aa11.51□□□□□ -0.57
TRAV35-201ENST00000390462 STAG3Q9UJ98 1225 aa11.47□□□□□ -0.57
TRAV35-201ENST00000390462 PABPN1Q86U42 306 aaKnown RBP eCLIP11.42□□□□□ -0.58
TRAV35-201ENST00000390462 HS6ST3Q8IZP7 471 aa11.39□□□□□ -0.59
TRAV35-201ENST00000390462 PLCD3Q8N3E9 789 aa11.38□□□□□ -0.59
TRAV35-201ENST00000390462 NPM2Q86SE8 214 aaKnown RBP11.34□□□□□ -0.59
TRAV35-201ENST00000390462 BRPF1P55201 1214 aaPredicted RBP11.33□□□□□ -0.6
TRAV35-201ENST00000390462 UBTFP17480 764 aaKnown RBP11.32□□□□□ -0.6
TRAV35-201ENST00000390462 TRIM26Q12899 539 aaPredicted RBP11.32□□□□□ -0.6
TRAV35-201ENST00000390462 MIER1Q8N108 512 aa11.32□□□□□ -0.6
TRAV35-201ENST00000390462 CIZ1Q9ULV3 898 aaPredicted RBP11.3□□□□□ -0.6
TRAV35-201ENST00000390462 CACNB1Q02641 598 aaPredicted RBP11.29□□□□□ -0.6
TRAV35-201ENST00000390462 GTPBP6O43824 516 aaPredicted RBP11.24□□□□□ -0.61
TRAV35-201ENST00000390462 LMOD2Q6P5Q4 547 aa11.24□□□□□ -0.61
TRAV35-201ENST00000390462 TRIM41Q8WV44 630 aa11.24□□□□□ -0.61
TRAV35-201ENST00000390462 PLEKHG5O94827 1062 aa11.23□□□□□ -0.61
TRAV35-201ENST00000390462 NKX1-1Q15270 411 aaPredicted RBP11.23□□□□□ -0.61
TRAV35-201ENST00000390462 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.22□□□□□ -0.61
TRAV35-201ENST00000390462 ZBTB47Q9UFB7 747 aaPredicted RBP11.22□□□□□ -0.61
TRAV35-201ENST00000390462 HRCP23327 699 aa11.2□□□□□ -0.62
TRAV35-201ENST00000390462 P3H3Q8IVL6 736 aa11.2□□□□□ -0.62
TRAV35-201ENST00000390462 NEUROD2Q15784 382 aa11.18□□□□□ -0.62
TRAV35-201ENST00000390462 RNF25Q96BH1 459 aaPredicted RBP11.11□□□□□ -0.63
TRAV35-201ENST00000390462 ZMYND15Q9H091 742 aa11.08□□□□□ -0.64
TRAV35-201ENST00000390462 RBM42Q9BTD8 480 aaKnown RBP11.06□□□□□ -0.64
TRAV35-201ENST00000390462 RSPH6AQ9H0K4 717 aa11.06□□□□□ -0.64
TRAV35-201ENST00000390462 SPDYE1Q8NFV5 336 aaPredicted RBP11.05□□□□□ -0.64
TRAV35-201ENST00000390462 ZC3H15Q8WU90 426 aaKnown RBP11.04□□□□□ -0.64
TRAV35-201ENST00000390462 AKT1S1Q96B36 256 aa11.04□□□□□ -0.64
TRAV35-201ENST00000390462 GSE1Q14687 1217 aa11.02□□□□□ -0.65
TRAV35-201ENST00000390462 KCNV2Q8TDN2 545 aa11.02□□□□□ -0.65
TRAV35-201ENST00000390462 SLC24A3Q9HC58 644 aa11.01□□□□□ -0.65
TRAV35-201ENST00000390462 RIOK3O14730 519 aaKnown RBP11□□□□□ -0.65
TRAV35-201ENST00000390462 NUBP1P53384 320 aa11□□□□□ -0.65
TRAV35-201ENST00000390462 RYDENQ9NUL5 291 aaKnown RBP11□□□□□ -0.65
TRAV35-201ENST00000390462 STK25O00506 426 aa10.98□□□□□ -0.65
TRAV35-201ENST00000390462 WDR70Q9NW82 654 aa10.98□□□□□ -0.65
TRAV35-201ENST00000390462 CLEC11AQ9Y240 323 aa10.96□□□□□ -0.65
TRAV35-201ENST00000390462 ARID3AQ99856 593 aa10.95□□□□□ -0.66
TRAV35-201ENST00000390462 CREBZFQ9NS37 354 aa10.95□□□□□ -0.66
TRAV35-201ENST00000390462 PRR29P0C7W0 189 aa10.94□□□□□ -0.66
TRAV35-201ENST00000390462 REM2Q8IYK8 340 aaPredicted RBP10.93□□□□□ -0.66
TRAV35-201ENST00000390462 DCAF8Q5TAQ9 597 aa10.92□□□□□ -0.66
TRAV35-201ENST00000390462 CCDC9Q9Y3X0 531 aaKnown RBP10.92□□□□□ -0.66
TRAV35-201ENST00000390462 VGFO15240 615 aaPredicted RBP10.91□□□□□ -0.66
TRAV35-201ENST00000390462 MNX1P50219 401 aaPredicted RBP10.91□□□□□ -0.66
TRAV35-201ENST00000390462 ZBTB7CA1YPR0 619 aa10.89□□□□□ -0.67
TRAV35-201ENST00000390462 FAM212AQ96EL1 285 aa10.89□□□□□ -0.67
TRAV35-201ENST00000390462 C1orf115Q9H7X2 142 aa10.86□□□□□ -0.67
TRAV35-201ENST00000390462 PDIA4P13667 645 aaKnown RBP10.84□□□□□ -0.67
TRAV35-201ENST00000390462 STK24Q9Y6E0 443 aa10.84□□□□□ -0.67
TRAV35-201ENST00000390462 ZMYND10O75800 440 aa10.83□□□□□ -0.68
TRAV35-201ENST00000390462 CADPS2Q86UW7 1296 aa10.83□□□□□ -0.68
TRAV35-201ENST00000390462 RASEFQ8IZ41 740 aa10.83□□□□□ -0.68
TRAV35-201ENST00000390462 SGIP1Q9BQI5 828 aa10.83□□□□□ -0.68
TRAV35-201ENST00000390462 BCL11BQ9C0K0 894 aaPredicted RBP10.82□□□□□ -0.68
TRAV35-201ENST00000390462 CHRM1P11229 460 aaPredicted RBP10.81□□□□□ -0.68
TRAV35-201ENST00000390462 ARHGEF1Q92888 912 aaKnown RBP10.81□□□□□ -0.68
TRAV35-201ENST00000390462 PITPNM1O00562 1244 aa10.8□□□□□ -0.68
TRAV35-201ENST00000390462 TESPA1A2RU30 521 aaPredicted RBP10.79□□□□□ -0.68
TRAV35-201ENST00000390462 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.77□□□□□ -0.69
TRAV35-201ENST00000390462 IL27Q8NEV9 243 aa10.77□□□□□ -0.69
TRAV35-201ENST00000390462 ZFP91Q96JP5 570 aaPredicted RBP10.77□□□□□ -0.69
TRAV35-201ENST00000390462 APBB1O00213 710 aa10.74□□□□□ -0.69
TRAV35-201ENST00000390462 SEMA3EO15041 775 aa10.74□□□□□ -0.69
TRAV35-201ENST00000390462 BARGINQ6ZT62 677 aa10.74□□□□□ -0.69
TRAV35-201ENST00000390462 NECTIN2Q92692 538 aa10.74□□□□□ -0.69
TRAV35-201ENST00000390462 GPBP1L1Q9HC44 474 aaPredicted RBP10.74□□□□□ -0.69
TRAV35-201ENST00000390462 ARID3CA6NKF2 412 aa10.73□□□□□ -0.69
TRAV35-201ENST00000390462 PYGBP11216 843 aa10.72□□□□□ -0.69
TRAV35-201ENST00000390462 AK7Q96M32 723 aa10.71□□□□□ -0.69
TRAV35-201ENST00000390462 MKRN3Q13064 507 aaKnown RBP10.67□□□□□ -0.7
TRAV35-201ENST00000390462 E2F4Q16254 413 aa10.67□□□□□ -0.7
TRAV35-201ENST00000390462 SMYD5Q6GMV2 418 aa10.67□□□□□ -0.7
TRAV35-201ENST00000390462 KDM4CQ9H3R0 1056 aa10.67□□□□□ -0.7
TRAV35-201ENST00000390462 CHADLQ6NUI6 762 aa10.65□□□□□ -0.7
TRAV35-201ENST00000390462 TSPYL2Q9H2G4 693 aaPredicted RBP10.61□□□□□ -0.71
TRAV35-201ENST00000390462 LOC105371045A0A1W2PR82 267 aa10.6□□□□□ -0.71
TRAV35-201ENST00000390462 FARP1Q9Y4F1 1045 aaPredicted RBP10.6□□□□□ -0.71
TRAV35-201ENST00000390462 FLIIQ13045 1269 aa10.59□□□□□ -0.71
TRAV35-201ENST00000390462 ZNF467Q7Z7K2 595 aaPredicted RBP10.59□□□□□ -0.71
TRAV35-201ENST00000390462 KCTD17Q8N5Z5 321 aa10.59□□□□□ -0.71
TRAV35-201ENST00000390462 KRI1Q8N9T8 703 aaKnown RBP10.58□□□□□ -0.72
TRAV35-201ENST00000390462 CCDC82Q8N4S0 544 aa10.57□□□□□ -0.72
TRAV35-201ENST00000390462 PDE4DQ08499 809 aa10.54□□□□□ -0.72
TRAV35-201ENST00000390462 PDAP1Q13442 181 aaKnown RBP10.54□□□□□ -0.72
TRAV35-201ENST00000390462 TRIM66O15016 1216 aa10.53□□□□□ -0.72
TRAV35-201ENST00000390462 PRKAR2AP13861 404 aaKnown RBP10.53□□□□□ -0.72
TRAV35-201ENST00000390462 TRAIPQ9BWF2 469 aa10.53□□□□□ -0.72
TRAV35-201ENST00000390462 RAD21O60216 631 aa10.52□□□□□ -0.73
TRAV35-201ENST00000390462 CCDC61Q9Y6R9 512 aa10.52□□□□□ -0.73
TRAV35-201ENST00000390462 ZNF316A6NFI3 1004 aaPredicted RBP10.51□□□□□ -0.73
TRAV35-201ENST00000390462 PCDHB8Q9UN66 801 aa10.51□□□□□ -0.73
TRAV35-201ENST00000390462 PCDHB13Q9Y5F0 798 aa10.51□□□□□ -0.73
TRAV35-201ENST00000390462 SHROOM4Q9ULL8 1493 aa10.5□□□□□ -0.73
TRAV35-201ENST00000390462 A6NJR5 290 aa10.5□□□□□ -0.73
TRAV35-201ENST00000390462 PELP1Q8IZL8 1130 aaKnown RBP10.5□□□□□ -0.73
TRAV35-201ENST00000390462 TRAK2O60296 914 aa10.49□□□□□ -0.73
TRAV35-201ENST00000390462 FXR2P51116 673 aaKnown RBP eCLIP10.49□□□□□ -0.73
TRAV35-201ENST00000390462 GPIHBP1Q8IV16 184 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms