RNA–Protein interactions for RNA: ENST00000389194.6

LTN1-202, Transcript of listerin E3 ubiquitin protein ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LTN1, Length 7,749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTN1-202ENST00000389194 TPRNQ4KMQ1 711 aa6.73□□□□□ -1.33
LTN1-202ENST00000389194 NEFMP07197 916 aa6.73□□□□□ -1.33
LTN1-202ENST00000389194 NEUROD2Q15784 382 aa6.72□□□□□ -1.33
LTN1-202ENST00000389194 B4GALNT3Q6L9W6 998 aa6.72□□□□□ -1.33
LTN1-202ENST00000389194 FOXD1Q16676 465 aa6.71□□□□□ -1.33
LTN1-202ENST00000389194 TNNT2P45379 298 aaPredicted RBP6.71□□□□□ -1.34
LTN1-202ENST00000389194 LAS1LQ9Y4W2 734 aaKnown RBP6.71□□□□□ -1.34
LTN1-202ENST00000389194 EIF4G2P78344 907 aaKnown RBP eCLIP6.7□□□□□ -1.34
LTN1-202ENST00000389194 WDR43Q15061 677 aaKnown RBP eCLIP6.7□□□□□ -1.34
LTN1-202ENST00000389194 ZBTB7CA1YPR0 619 aa6.7□□□□□ -1.34
LTN1-202ENST00000389194 SOGA1O94964 1423 aa6.69□□□□□ -1.34
LTN1-202ENST00000389194 PPM1GO15355 546 aaPredicted RBP6.68□□□□□ -1.34
LTN1-202ENST00000389194 TSPY4P0CV99 314 aa6.68□□□□□ -1.34
LTN1-202ENST00000389194 TSPY10P0CW01 314 aa6.68□□□□□ -1.34
LTN1-202ENST00000389194 CECR2Q9BXF3 1484 aa6.68□□□□□ -1.34
LTN1-202ENST00000389194 CHMP7Q8WUX9 453 aaPredicted RBP6.67□□□□□ -1.34
LTN1-202ENST00000389194 KANK4Q5T7N3 995 aaPredicted RBP6.67□□□□□ -1.34
LTN1-202ENST00000389194 CC2D1BQ5T0F9 858 aaKnown RBP6.67□□□□□ -1.34
LTN1-202ENST00000389194 RGS3P49796 1198 aa6.66□□□□□ -1.34
LTN1-202ENST00000389194 A0A0G2JS52 829 aa6.66□□□□□ -1.34
LTN1-202ENST00000389194 ESF1Q9H501 851 aaKnown RBP6.65□□□□□ -1.34
LTN1-202ENST00000389194 CCDC180Q9P1Z9 1646 aa6.65□□□□□ -1.35
LTN1-202ENST00000389194 UPF2Q9HAU5 1272 aaKnown RBP6.65□□□□□ -1.35
LTN1-202ENST00000389194 ABCC8Q09428 1581 aa6.64□□□□□ -1.35
LTN1-202ENST00000389194 ANP32EQ9BTT0 268 aa6.64□□□□□ -1.35
LTN1-202ENST00000389194 GOLGA3Q08378 1498 aa6.64□□□□□ -1.35
LTN1-202ENST00000389194 C14orf37Q86TY3 774 aa6.64□□□□□ -1.35
LTN1-202ENST00000389194 WRNQ14191 1432 aaPredicted RBP eCLIP6.64□□□□□ -1.35
LTN1-202ENST00000389194 CARD11Q9BXL7 1154 aa6.63□□□□□ -1.35
LTN1-202ENST00000389194 TAOK2Q9UL54 1235 aa6.63□□□□□ -1.35
LTN1-202ENST00000389194 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.63□□□□□ -1.35
LTN1-202ENST00000389194 SPRYD3Q8NCJ5 442 aa6.63□□□□□ -1.35
LTN1-202ENST00000389194 FRAT1Q92837 279 aaPredicted RBP6.63□□□□□ -1.35
LTN1-202ENST00000389194 RB1CC1Q8TDY2 1594 aa6.62□□□□□ -1.35
LTN1-202ENST00000389194 SAFB2Q14151 953 aaKnown RBP eCLIP6.62□□□□□ -1.35
LTN1-202ENST00000389194 CFDP1Q9UEE9 299 aaPredicted RBP6.61□□□□□ -1.35
LTN1-202ENST00000389194 SOX12O15370 315 aa6.61□□□□□ -1.35
LTN1-202ENST00000389194 NPM1P06748 294 aaKnown RBP eCLIP6.6□□□□□ -1.35
LTN1-202ENST00000389194 RBM19Q9Y4C8 960 aaKnown RBP6.6□□□□□ -1.35
LTN1-202ENST00000389194 TNIKQ9UKE5 1360 aa6.59□□□□□ -1.35
LTN1-202ENST00000389194 DCAF11Q8TEB1 546 aa6.59□□□□□ -1.35
LTN1-202ENST00000389194 ANP32BQ92688 251 aaKnown RBP6.59□□□□□ -1.35
LTN1-202ENST00000389194 NCLP19338 710 aaKnown RBP6.59□□□□□ -1.35
LTN1-202ENST00000389194 CCDC88BA6NC98 1476 aa6.58□□□□□ -1.36
LTN1-202ENST00000389194 ARID4BQ4LE39 1312 aaPredicted RBP6.58□□□□□ -1.36
LTN1-202ENST00000389194 BAZ1BQ9UIG0 1483 aaKnown RBP6.58□□□□□ -1.36
LTN1-202ENST00000389194 PLEKHD1A6NEE1 506 aa6.58□□□□□ -1.36
LTN1-202ENST00000389194 KNSTRNQ9Y448 316 aa6.58□□□□□ -1.36
LTN1-202ENST00000389194 HSPA5P11021 654 aaKnown RBP6.57□□□□□ -1.36
LTN1-202ENST00000389194 CCNB3Q8WWL7 1395 aa6.56□□□□□ -1.36
LTN1-202ENST00000389194 U2SURPO15042 1029 aaKnown RBP6.56□□□□□ -1.36
LTN1-202ENST00000389194 PPP4R2Q9NY27 417 aa6.55□□□□□ -1.36
LTN1-202ENST00000389194 PPP1R15AO75807 674 aaPredicted RBP6.55□□□□□ -1.36
LTN1-202ENST00000389194 NOP58Q9Y2X3 529 aaKnown RBP6.55□□□□□ -1.36
LTN1-202ENST00000389194 TSHZ2Q9NRE2 1034 aa6.55□□□□□ -1.36
LTN1-202ENST00000389194 CEP164Q9UPV0 1460 aa6.54□□□□□ -1.36
LTN1-202ENST00000389194 MLECQ14165 292 aa6.54□□□□□ -1.36
LTN1-202ENST00000389194 LMOD2Q6P5Q4 547 aa6.54□□□□□ -1.36
LTN1-202ENST00000389194 FTSJ3Q8IY81 847 aaKnown RBP6.54□□□□□ -1.36
LTN1-202ENST00000389194 APBB1O00213 710 aa6.54□□□□□ -1.36
LTN1-202ENST00000389194 KIF27Q86VH2 1401 aa6.54□□□□□ -1.36
LTN1-202ENST00000389194 NUTM2DQ5VT03 806 aaPredicted RBP6.54□□□□□ -1.36
LTN1-202ENST00000389194 EIF4G1Q04637 1599 aaKnown RBP6.53□□□□□ -1.36
LTN1-202ENST00000389194 MROH2BQ7Z745 1585 aa6.53□□□□□ -1.36
LTN1-202ENST00000389194 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.53□□□□□ -1.36
LTN1-202ENST00000389194 DEKP35659 375 aaKnown RBP6.53□□□□□ -1.36
LTN1-202ENST00000389194 RUSC2Q8N2Y8 1516 aa6.53□□□□□ -1.36
LTN1-202ENST00000389194 STK26Q9P289 416 aa6.52□□□□□ -1.36
LTN1-202ENST00000389194 RAB3GAP2Q9H2M9 1393 aa6.52□□□□□ -1.37
LTN1-202ENST00000389194 MYH16Q9H6N6 1097 aa6.52□□□□□ -1.37
LTN1-202ENST00000389194 PLCB2Q00722 1185 aa6.52□□□□□ -1.37
LTN1-202ENST00000389194 CUX2O14529 1486 aa6.51□□□□□ -1.37
LTN1-202ENST00000389194 PKD2Q13563 968 aa6.51□□□□□ -1.37
LTN1-202ENST00000389194 AMER1Q5JTC6 1135 aaPredicted RBP6.51□□□□□ -1.37
LTN1-202ENST00000389194 ARID3AQ99856 593 aa6.51□□□□□ -1.37
LTN1-202ENST00000389194 GZF1Q9H116 711 aaPredicted RBP6.51□□□□□ -1.37
LTN1-202ENST00000389194 CCDC146Q8IYE0 955 aa6.5□□□□□ -1.37
LTN1-202ENST00000389194 EEA1Q15075 1411 aa6.5□□□□□ -1.37
LTN1-202ENST00000389194 CARMIL1Q5VZK9 1371 aa6.5□□□□□ -1.37
LTN1-202ENST00000389194 TULP1O00294 542 aaPredicted RBP6.5□□□□□ -1.37
LTN1-202ENST00000389194 SLC4A3P48751 1232 aa6.5□□□□□ -1.37
LTN1-202ENST00000389194 SLKQ9H2G2 1235 aaPredicted RBP6.5□□□□□ -1.37
LTN1-202ENST00000389194 WIZO95785 1651 aa6.5□□□□□ -1.37
LTN1-202ENST00000389194 BECN1Q14457 450 aa6.49□□□□□ -1.37
LTN1-202ENST00000389194 TRIM44Q96DX7 344 aaPredicted RBP6.49□□□□□ -1.37
LTN1-202ENST00000389194 POGKQ9P215 609 aa6.49□□□□□ -1.37
LTN1-202ENST00000389194 PLIN1O60240 522 aa6.49□□□□□ -1.37
LTN1-202ENST00000389194 NAP1L5Q96NT1 182 aaPredicted RBP6.49□□□□□ -1.37
LTN1-202ENST00000389194 CLUAP1Q96AJ1 413 aa6.49□□□□□ -1.37
LTN1-202ENST00000389194 TDRD9Q8NDG6 1382 aaKnown RBP6.49□□□□□ -1.37
LTN1-202ENST00000389194 GGT6Q6P531 493 aa6.48□□□□□ -1.37
LTN1-202ENST00000389194 DDRGK1Q96HY6 314 aa6.48□□□□□ -1.37
LTN1-202ENST00000389194 L3MBTL2Q969R5 705 aa6.48□□□□□ -1.37
LTN1-202ENST00000389194 SETD5Q9C0A6 1442 aa6.48□□□□□ -1.37
LTN1-202ENST00000389194 MPHOSPH9Q99550 1183 aa6.47□□□□□ -1.37
LTN1-202ENST00000389194 MAPK8IP3Q9UPT6 1336 aa6.47□□□□□ -1.37
LTN1-202ENST00000389194 CFAP53Q96M91 514 aa6.47□□□□□ -1.37
LTN1-202ENST00000389194 NUTM2FA1L443 756 aa6.47□□□□□ -1.37
LTN1-202ENST00000389194 SRPK2P78362 688 aaKnown RBP6.47□□□□□ -1.37
LTN1-202ENST00000389194 VPS8Q8N3P4 1428 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms