RNA–Protein interactions for RNA: ENST00000374198.4

PRPF4-201, Transcript of pre-mRNA processing factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PRPF4, Length 2,787 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4-201ENST00000374198 EEA1Q15075 1411 aa18.36■□□□□ 0.53
PRPF4-201ENST00000374198 DNAJC5Q9H3Z4 198 aa18.36■□□□□ 0.53
PRPF4-201ENST00000374198 ZNF608Q9ULD9 1512 aaPredicted RBP18.35■□□□□ 0.53
PRPF4-201ENST00000374198 ITGAEP38570 1179 aa18.35■□□□□ 0.53
PRPF4-201ENST00000374198 FGD5Q6ZNL6 1462 aa18.34■□□□□ 0.53
PRPF4-201ENST00000374198 GOLGA3Q08378 1498 aa18.33■□□□□ 0.52
PRPF4-201ENST00000374198 RAD54L2Q9Y4B4 1467 aa18.33■□□□□ 0.52
PRPF4-201ENST00000374198 TARBP1Q13395 1621 aaKnown RBP18.3■□□□□ 0.52
PRPF4-201ENST00000374198 DEKP35659 375 aaKnown RBP18.28■□□□□ 0.52
PRPF4-201ENST00000374198 APLP2Q06481 763 aa18.28■□□□□ 0.52
PRPF4-201ENST00000374198 AQRO60306 1485 aaKnown RBP eCLIP18.27■□□□□ 0.521e-6■■■■□ 23.1
PRPF4-201ENST00000374198 EIF4G3O43432 1585 aaKnown RBP18.27■□□□□ 0.51
PRPF4-201ENST00000374198 RUSC2Q8N2Y8 1516 aa18.26■□□□□ 0.51
PRPF4-201ENST00000374198 TDRD9Q8NDG6 1382 aaKnown RBP18.25■□□□□ 0.51
PRPF4-201ENST00000374198 VPS8Q8N3P4 1428 aa18.22■□□□□ 0.51
PRPF4-201ENST00000374198 ANO8Q9HCE9 1232 aaPredicted RBP18.22■□□□□ 0.51
PRPF4-201ENST00000374198 SYNJ1O43426 1573 aa18.22■□□□□ 0.51
PRPF4-201ENST00000374198 CLIP1P30622 1438 aa18.22■□□□□ 0.51
PRPF4-201ENST00000374198 TOP2BQ02880 1626 aa18.21■□□□□ 0.51
PRPF4-201ENST00000374198 BIVM-ERCC5R4GMW8 1640 aa18.19■□□□□ 0.5
PRPF4-201ENST00000374198 CDK11AQ9UQ88 783 aaPredicted RBP18.18■□□□□ 0.5
PRPF4-201ENST00000374198 OSCARQ8IYS5 282 aa18.17■□□□□ 0.5
PRPF4-201ENST00000374198 FBLN2P98095 1184 aa18.14■□□□□ 0.5
PRPF4-201ENST00000374198 ABCA10Q8WWZ4 1543 aa18.14■□□□□ 0.49
PRPF4-201ENST00000374198 WDR97A6NE52 1622 aa18.13■□□□□ 0.49
PRPF4-201ENST00000374198 TRIM52Q96A61 297 aa18.13■□□□□ 0.49
PRPF4-201ENST00000374198 DDX10Q13206 875 aaKnown RBP18.11■□□□□ 0.49
PRPF4-201ENST00000374198 GAPVD1Q14C86 1478 aa18.11■□□□□ 0.49
PRPF4-201ENST00000374198 ERICH6BQ5W0A0 696 aa18.1■□□□□ 0.49
PRPF4-201ENST00000374198 GRIN2BQ13224 1484 aa18.1■□□□□ 0.49
PRPF4-201ENST00000374198 SNAPC4Q5SXM2 1469 aa18.09■□□□□ 0.49
PRPF4-201ENST00000374198 CCER2I3L3R5 266 aa18.09■□□□□ 0.49
PRPF4-201ENST00000374198 KIF21BO75037 1637 aa18.06■□□□□ 0.48
PRPF4-201ENST00000374198 CHMP7Q8WUX9 453 aaPredicted RBP18.05■□□□□ 0.48
PRPF4-201ENST00000374198 ABCA5Q8WWZ7 1642 aa18.05■□□□□ 0.48
PRPF4-201ENST00000374198 CHD1O14646 1710 aa18.04■□□□□ 0.48
PRPF4-201ENST00000374198 PBRM1Q86U86 1689 aa18.04■□□□□ 0.48
PRPF4-201ENST00000374198 MAGI1Q96QZ7 1491 aaPredicted RBP18.04■□□□□ 0.48
PRPF4-201ENST00000374198 PPP1R15AO75807 674 aaPredicted RBP18.04■□□□□ 0.48
PRPF4-201ENST00000374198 SALL2Q9Y467 1007 aaPredicted RBP18.04■□□□□ 0.48
PRPF4-201ENST00000374198 SYNJ2O15056 1496 aa17.98■□□□□ 0.47
PRPF4-201ENST00000374198 ANP32CO43423 234 aa17.97■□□□□ 0.47
PRPF4-201ENST00000374198 NOP58Q9Y2X3 529 aaKnown RBP17.96■□□□□ 0.47
PRPF4-201ENST00000374198 NBR1Q14596 966 aa17.95■□□□□ 0.46
PRPF4-201ENST00000374198 RRBP1Q9P2E9 1410 aaKnown RBP17.95■□□□□ 0.46
PRPF4-201ENST00000374198 IRX6P78412 446 aaPredicted RBP17.94■□□□□ 0.46
PRPF4-201ENST00000374198 ERICH3Q5RHP9 1530 aa17.92■□□□□ 0.46
PRPF4-201ENST00000374198 KIF27Q86VH2 1401 aa17.92■□□□□ 0.46
PRPF4-201ENST00000374198 MAPKBP1O60336 1514 aa17.91■□□□□ 0.46
PRPF4-201ENST00000374198 ADAMTS12P58397 1594 aa17.9■□□□□ 0.46
PRPF4-201ENST00000374198 PPP4R2Q9NY27 417 aa17.9■□□□□ 0.46
PRPF4-201ENST00000374198 FHAD1B1AJZ9 1412 aa17.89■□□□□ 0.45
PRPF4-201ENST00000374198 KANK4Q5T7N3 995 aaPredicted RBP17.88■□□□□ 0.45
PRPF4-201ENST00000374198 CCDC136Q96JN2 1154 aa17.88■□□□□ 0.45
PRPF4-201ENST00000374198 PAK3O75914 559 aaPredicted RBP17.88■□□□□ 0.45
PRPF4-201ENST00000374198 RAPGEF2Q9Y4G8 1499 aa17.88■□□□□ 0.45
PRPF4-201ENST00000374198 RANGAP1P46060 587 aaPredicted RBP17.87■□□□□ 0.45
PRPF4-201ENST00000374198 UBE2Q2Q8WVN8 375 aa17.87■□□□□ 0.45
PRPF4-201ENST00000374198 GRIN2AQ12879 1464 aa17.86■□□□□ 0.45
PRPF4-201ENST00000374198 CCNB3Q8WWL7 1395 aa17.83■□□□□ 0.45
PRPF4-201ENST00000374198 RAB3GAP2Q9H2M9 1393 aa17.83■□□□□ 0.45
PRPF4-201ENST00000374198 IL27Q8NEV9 243 aa17.83■□□□□ 0.45
PRPF4-201ENST00000374198 ARHGEF11O15085 1522 aa17.82■□□□□ 0.44
PRPF4-201ENST00000374198 RIMBP3CA6NJZ7 1639 aa17.82■□□□□ 0.44
PRPF4-201ENST00000374198 RIMBP3BA6NNM3 1639 aa17.82■□□□□ 0.44
PRPF4-201ENST00000374198 RIMBP3Q9UFD9 1639 aa17.82■□□□□ 0.44
PRPF4-201ENST00000374198 HNRNPUQ00839 825 aaKnown RBP eCLIP17.82■□□□□ 0.44
PRPF4-201ENST00000374198 IGF1RP08069 1367 aa17.82■□□□□ 0.44
PRPF4-201ENST00000374198 CLASP1Q7Z460 1538 aa17.82■□□□□ 0.44
PRPF4-201ENST00000374198 RTL5Q5HYW3 569 aaPredicted RBP17.81■□□□□ 0.44
PRPF4-201ENST00000374198 HIRIP3Q9BW71 556 aaPredicted RBP17.79■□□□□ 0.44
PRPF4-201ENST00000374198 TIMELESSQ9UNS1 1208 aa17.77■□□□□ 0.44
PRPF4-201ENST00000374198 SIN3AQ96ST3 1273 aa17.77■□□□□ 0.43
PRPF4-201ENST00000374198 ARAP1Q96P48 1450 aa17.77■□□□□ 0.43
PRPF4-201ENST00000374198 CEP170Q5SW79 1584 aa17.76■□□□□ 0.43
PRPF4-201ENST00000374198 NUP160Q12769 1436 aa17.76■□□□□ 0.43
PRPF4-201ENST00000374198 CUL7Q14999 1698 aa17.76■□□□□ 0.43
PRPF4-201ENST00000374198 B4GALNT3Q6L9W6 998 aa17.75■□□□□ 0.43
PRPF4-201ENST00000374198 RTN4Q9NQC3 1192 aaKnown RBP17.75■□□□□ 0.43
PRPF4-201ENST00000374198 CARMIL1Q5VZK9 1371 aa17.74■□□□□ 0.43
PRPF4-201ENST00000374198 CYB5RLQ6IPT4 315 aa17.74■□□□□ 0.43
PRPF4-201ENST00000374198 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.74■□□□□ 0.43
PRPF4-201ENST00000374198 IPO9Q96P70 1041 aaKnown RBP17.73■□□□□ 0.43
PRPF4-201ENST00000374198 SETD5Q9C0A6 1442 aa17.7■□□□□ 0.42
PRPF4-201ENST00000374198 ANP32AP39687 249 aaKnown RBP17.69■□□□□ 0.42
PRPF4-201ENST00000374198 ZBTB47Q9UFB7 747 aaPredicted RBP17.68■□□□□ 0.42
PRPF4-201ENST00000374198 WASHC2AQ641Q2 1341 aa17.67■□□□□ 0.42
PRPF4-201ENST00000374198 JPH4Q96JJ6 628 aa17.64■□□□□ 0.41
PRPF4-201ENST00000374198 PRG4Q92954 1404 aaPredicted RBP17.61■□□□□ 0.41
PRPF4-201ENST00000374198 KIAA0586Q9BVV6 1533 aa17.61■□□□□ 0.41
PRPF4-201ENST00000374198 ERCC6L2Q5T890 1561 aa17.6■□□□□ 0.41
PRPF4-201ENST00000374198 SHROOM2Q13796 1616 aa17.6■□□□□ 0.41
PRPF4-201ENST00000374198 C11orf95C9JLR9 678 aaPredicted RBP17.6■□□□□ 0.41
PRPF4-201ENST00000374198 WASHC2CQ9Y4E1 1318 aa17.56■□□□□ 0.4
PRPF4-201ENST00000374198 USP35Q9P2H5 1018 aa17.56■□□□□ 0.4
PRPF4-201ENST00000374198 PRXQ9BXM0 1461 aa17.55■□□□□ 0.4
PRPF4-201ENST00000374198 ZBED9Q6R2W3 1325 aa17.52■□□□□ 0.39
PRPF4-201ENST00000374198 IQGAP2Q13576 1575 aa17.51■□□□□ 0.39
PRPF4-201ENST00000374198 NEFMP07197 916 aa17.5■□□□□ 0.39
PRPF4-201ENST00000374198 TONSLQ96HA7 1378 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms