RNA–Protein interactions for RNA: ENST00000370651.5

PTP4A1-201, Transcript of protein tyrosine phosphatase type IVA, member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTP4A1, Length 5,088 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1-201ENST00000370651 KDM2AQ9Y2K7 1162 aa22.77■■□□□ 1.24
PTP4A1-201ENST00000370651 PPP4R2Q9NY27 417 aa22.71■■□□□ 1.23
PTP4A1-201ENST00000370651 RRP7BPQ9NSQ0 103 aa22.71■■□□□ 1.23
PTP4A1-201ENST00000370651 CHGAP10645 457 aaKnown RBP22.7■■□□□ 1.22
PTP4A1-201ENST00000370651 BECN1Q14457 450 aa22.67■■□□□ 1.22
PTP4A1-201ENST00000370651 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.66■■□□□ 1.22
PTP4A1-201ENST00000370651 TSPY4P0CV99 314 aa22.66■■□□□ 1.22
PTP4A1-201ENST00000370651 TSPY10P0CW01 314 aa22.66■■□□□ 1.22
PTP4A1-201ENST00000370651 PPM1GO15355 546 aaPredicted RBP22.65■■□□□ 1.22
PTP4A1-201ENST00000370651 NOP58Q9Y2X3 529 aaKnown RBP22.62■■□□□ 1.21
PTP4A1-201ENST00000370651 CEP164Q9UPV0 1460 aa22.61■■□□□ 1.21
PTP4A1-201ENST00000370651 WRNQ14191 1432 aaPredicted RBP eCLIP22.6■■□□□ 1.21
PTP4A1-201ENST00000370651 SIN3AQ96ST3 1273 aa22.6■■□□□ 1.21
PTP4A1-201ENST00000370651 SENP3-EIF4A1A0A087X0R7 540 aa22.58■■□□□ 1.21
PTP4A1-201ENST00000370651 TRIM44Q96DX7 344 aaPredicted RBP22.55■■□□□ 1.2
PTP4A1-201ENST00000370651 RBM19Q9Y4C8 960 aaKnown RBP22.54■■□□□ 1.2
PTP4A1-201ENST00000370651 LAS1LQ9Y4W2 734 aaKnown RBP22.53■■□□□ 1.2
PTP4A1-201ENST00000370651 B4GALNT3Q6L9W6 998 aa22.52■■□□□ 1.2
PTP4A1-201ENST00000370651 ERICH6BQ5W0A0 696 aa22.51■■□□□ 1.19
PTP4A1-201ENST00000370651 RTN4Q9NQC3 1192 aaKnown RBP22.48■■□□□ 1.19
PTP4A1-201ENST00000370651 CCER2I3L3R5 266 aa22.48■■□□□ 1.19
PTP4A1-201ENST00000370651 MYH16Q9H6N6 1097 aa22.48■■□□□ 1.19
PTP4A1-201ENST00000370651 STAG3Q9UJ98 1225 aa22.47■■□□□ 1.19
PTP4A1-201ENST00000370651 RB1CC1Q8TDY2 1594 aa22.45■■□□□ 1.18
PTP4A1-201ENST00000370651 CCNB3Q8WWL7 1395 aa22.44■■□□□ 1.18
PTP4A1-201ENST00000370651 GOLGA6L22H0YM25 854 aa22.44■■□□□ 1.18
PTP4A1-201ENST00000370651 TIMELESSQ9UNS1 1208 aa22.43■■□□□ 1.18
PTP4A1-201ENST00000370651 DEKP35659 375 aaKnown RBP22.42■■□□□ 1.18
PTP4A1-201ENST00000370651 CARD11Q9BXL7 1154 aa22.41■■□□□ 1.18
PTP4A1-201ENST00000370651 KIF27Q86VH2 1401 aa22.4■■□□□ 1.18
PTP4A1-201ENST00000370651 RGL3Q3MIN7 710 aa22.38■■□□□ 1.17
PTP4A1-201ENST00000370651 TSHZ2Q9NRE2 1034 aa22.37■■□□□ 1.17
PTP4A1-201ENST00000370651 KNSTRNQ9Y448 316 aa22.37■■□□□ 1.17
PTP4A1-201ENST00000370651 RGS3P49796 1198 aa22.36■■□□□ 1.17
PTP4A1-201ENST00000370651 ESF1Q9H501 851 aaKnown RBP22.35■■□□□ 1.17
PTP4A1-201ENST00000370651 NCLP19338 710 aaKnown RBP22.32■■□□□ 1.16
PTP4A1-201ENST00000370651 CDCA8Q53HL2 280 aa22.32■■□□□ 1.16
PTP4A1-201ENST00000370651 SOGA1O94964 1423 aa22.31■■□□□ 1.16
PTP4A1-201ENST00000370651 NAP1L5Q96NT1 182 aaPredicted RBP22.3■■□□□ 1.16
PTP4A1-201ENST00000370651 CFAP53Q96M91 514 aa22.28■■□□□ 1.16
PTP4A1-201ENST00000370651 VPS8Q8N3P4 1428 aa22.27■■□□□ 1.16
PTP4A1-201ENST00000370651 CFDP1Q9UEE9 299 aaPredicted RBP22.27■■□□□ 1.16
PTP4A1-201ENST00000370651 FTSJ3Q8IY81 847 aaKnown RBP22.26■■□□□ 1.15
PTP4A1-201ENST00000370651 PLEKHD1A6NEE1 506 aa22.25■■□□□ 1.15
PTP4A1-201ENST00000370651 CHMP7Q8WUX9 453 aaPredicted RBP22.24■■□□□ 1.15
PTP4A1-201ENST00000370651 SETD5Q9C0A6 1442 aa22.23■■□□□ 1.15
PTP4A1-201ENST00000370651 PTMAP06454 111 aaKnown RBP22.23■■□□□ 1.15
PTP4A1-201ENST00000370651 NPM1P06748 294 aaKnown RBP eCLIP22.22■■□□□ 1.15
PTP4A1-201ENST00000370651 NEUROD2Q15784 382 aa22.21■■□□□ 1.15
PTP4A1-201ENST00000370651 FHAD1B1AJZ9 1412 aa22.2■■□□□ 1.14
PTP4A1-201ENST00000370651 BAZ1BQ9UIG0 1483 aaKnown RBP22.19■■□□□ 1.14
PTP4A1-201ENST00000370651 HSPA5P11021 654 aaKnown RBP22.19■■□□□ 1.14
PTP4A1-201ENST00000370651 TNNT2P45379 298 aaPredicted RBP22.19■■□□□ 1.14
PTP4A1-201ENST00000370651 FRAT1Q92837 279 aaPredicted RBP22.19■■□□□ 1.14
PTP4A1-201ENST00000370651 CC2D1BQ5T0F9 858 aaKnown RBP22.17■■□□□ 1.14
PTP4A1-201ENST00000370651 DNTTIP2Q5QJE6 756 aaKnown RBP22.16■■□□□ 1.14
PTP4A1-201ENST00000370651 CECR2Q9BXF3 1484 aa22.16■■□□□ 1.14
PTP4A1-201ENST00000370651 BAZ1AQ9NRL2 1556 aaPredicted RBP22.15■■□□□ 1.14
PTP4A1-201ENST00000370651 CASC1Q6TDU7 716 aa22.14■■□□□ 1.13
PTP4A1-201ENST00000370651 KANK4Q5T7N3 995 aaPredicted RBP22.13■■□□□ 1.13
PTP4A1-201ENST00000370651 NACADO15069 1562 aa22.11■■□□□ 1.13
PTP4A1-201ENST00000370651 L1TD1Q5T7N2 865 aaKnown RBP22.11■■□□□ 1.13
PTP4A1-201ENST00000370651 RAB3GAP2Q9H2M9 1393 aa22.09■■□□□ 1.13
PTP4A1-201ENST00000370651 HSP90AB1P08238 724 aaKnown RBP22.09■■□□□ 1.13
PTP4A1-201ENST00000370651 MAPK8IP3Q9UPT6 1336 aa22.08■■□□□ 1.13
PTP4A1-201ENST00000370651 KCNH8Q96L42 1107 aa22.08■■□□□ 1.12
PTP4A1-201ENST00000370651 MS4A1P11836 297 aa22.07■■□□□ 1.12
PTP4A1-201ENST00000370651 TCERG1O14776 1098 aaKnown RBP22.06■■□□□ 1.12
PTP4A1-201ENST00000370651 NUDCQ9Y266 331 aa22.05■■□□□ 1.12
PTP4A1-201ENST00000370651 DCAF11Q8TEB1 546 aa22.05■■□□□ 1.12
PTP4A1-201ENST00000370651 TMF1P82094 1093 aa22.04■■□□□ 1.12
PTP4A1-201ENST00000370651 PPP1R15AO75807 674 aaPredicted RBP22.04■■□□□ 1.12
PTP4A1-201ENST00000370651 SENP3Q9H4L4 574 aaPredicted RBP22.04■■□□□ 1.12
PTP4A1-201ENST00000370651 HSCBQ8IWL3 235 aa22.03■■□□□ 1.12
PTP4A1-201ENST00000370651 IPO9Q96P70 1041 aaKnown RBP22.02■■□□□ 1.12
PTP4A1-201ENST00000370651 CHMP4BQ9H444 224 aaKnown RBP22.02■■□□□ 1.12
PTP4A1-201ENST00000370651 RCAN3Q9UKA8 241 aa22.02■■□□□ 1.12
PTP4A1-201ENST00000370651 CARMIL1Q5VZK9 1371 aa22.02■■□□□ 1.12
PTP4A1-201ENST00000370651 CCDC88BA6NC98 1476 aa22.01■■□□□ 1.11
PTP4A1-201ENST00000370651 ARHGAP35Q9NRY4 1499 aa22.01■■□□□ 1.11
PTP4A1-201ENST00000370651 TPRNQ4KMQ1 711 aa22■■□□□ 1.11
PTP4A1-201ENST00000370651 PLPPR3Q6T4P5 718 aa21.99■■□□□ 1.11
PTP4A1-201ENST00000370651 ABCC8Q09428 1581 aa21.99■■□□□ 1.11
PTP4A1-201ENST00000370651 ZRSR1Q15695 479 aaKnown RBP21.97■■□□□ 1.11
PTP4A1-201ENST00000370651 PLCB2Q00722 1185 aa21.95■■□□□ 1.1
PTP4A1-201ENST00000370651 KTN1Q86UP2 1357 aaKnown RBP21.95■■□□□ 1.1
PTP4A1-201ENST00000370651 SPRYD3Q8NCJ5 442 aa21.94■■□□□ 1.1
PTP4A1-201ENST00000370651 CUX2O14529 1486 aa21.94■■□□□ 1.1
PTP4A1-201ENST00000370651 MSNP26038 577 aaKnown RBP21.92■■□□□ 1.1
PTP4A1-201ENST00000370651 U2SURPO15042 1029 aaKnown RBP21.91■■□□□ 1.1
PTP4A1-201ENST00000370651 FOXD1Q16676 465 aa21.91■■□□□ 1.1
PTP4A1-201ENST00000370651 RALBP1Q15311 655 aa21.9■■□□□ 1.1
PTP4A1-201ENST00000370651 MROH2BQ7Z745 1585 aa21.9■■□□□ 1.1
PTP4A1-201ENST00000370651 SLKQ9H2G2 1235 aaPredicted RBP21.87■■□□□ 1.09
PTP4A1-201ENST00000370651 MPHOSPH9Q99550 1183 aa21.87■■□□□ 1.09
PTP4A1-201ENST00000370651 PKD2Q13563 968 aa21.87■■□□□ 1.09
PTP4A1-201ENST00000370651 DHX57Q6P158 1386 aaKnown RBP21.87■■□□□ 1.09
PTP4A1-201ENST00000370651 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.85■■□□□ 1.09
PTP4A1-201ENST00000370651 PNNQ9H307 717 aaKnown RBP21.84■■□□□ 1.09
PTP4A1-201ENST00000370651 C14orf37Q86TY3 774 aa21.83■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms