RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 NOP58Q9Y2X3 529 aaKnown RBP21.16■□□□□ 0.98
COL17A1-202ENST00000369733 SLC24A1O60721 1099 aa21.15■□□□□ 0.98
COL17A1-202ENST00000369733 KDM2AQ9Y2K7 1162 aa21.14■□□□□ 0.97
COL17A1-202ENST00000369733 RBM19Q9Y4C8 960 aaKnown RBP21.14■□□□□ 0.97
COL17A1-202ENST00000369733 CEP164Q9UPV0 1460 aa21.13■□□□□ 0.97
COL17A1-202ENST00000369733 RRP7BPQ9NSQ0 103 aa21.12■□□□□ 0.97
COL17A1-202ENST00000369733 SIN3AQ96ST3 1273 aa21.11■□□□□ 0.97
COL17A1-202ENST00000369733 PPM1GO15355 546 aaPredicted RBP21.1■□□□□ 0.97
COL17A1-202ENST00000369733 RB1CC1Q8TDY2 1594 aa21.1■□□□□ 0.97
COL17A1-202ENST00000369733 WRNQ14191 1432 aaPredicted RBP eCLIP21.09■□□□□ 0.97
COL17A1-202ENST00000369733 SENP3-EIF4A1A0A087X0R7 540 aa21.08■□□□□ 0.96
COL17A1-202ENST00000369733 BECN1Q14457 450 aa21.07■□□□□ 0.96
COL17A1-202ENST00000369733 RTN4Q9NQC3 1192 aaKnown RBP21.06■□□□□ 0.96
COL17A1-202ENST00000369733 LAS1LQ9Y4W2 734 aaKnown RBP21.06■□□□□ 0.96
COL17A1-202ENST00000369733 B4GALNT3Q6L9W6 998 aa21.05■□□□□ 0.96
COL17A1-202ENST00000369733 TSHZ2Q9NRE2 1034 aa21.04■□□□□ 0.96
COL17A1-202ENST00000369733 DEKP35659 375 aaKnown RBP21.03■□□□□ 0.96
COL17A1-202ENST00000369733 CCER2I3L3R5 266 aa21■□□□□ 0.95
COL17A1-202ENST00000369733 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21■□□□□ 0.95
COL17A1-202ENST00000369733 CHGAP10645 457 aaKnown RBP20.97■□□□□ 0.95
COL17A1-202ENST00000369733 TRIM44Q96DX7 344 aaPredicted RBP20.95■□□□□ 0.94
COL17A1-202ENST00000369733 CCNB3Q8WWL7 1395 aa20.95■□□□□ 0.94
COL17A1-202ENST00000369733 TSPY4P0CV99 314 aa20.94■□□□□ 0.94
COL17A1-202ENST00000369733 TSPY10P0CW01 314 aa20.94■□□□□ 0.94
COL17A1-202ENST00000369733 ERICH6BQ5W0A0 696 aa20.94■□□□□ 0.94
COL17A1-202ENST00000369733 SOGA1O94964 1423 aa20.91■□□□□ 0.94
COL17A1-202ENST00000369733 TIMELESSQ9UNS1 1208 aa20.88■□□□□ 0.93
COL17A1-202ENST00000369733 KIF27Q86VH2 1401 aa20.86■□□□□ 0.93
COL17A1-202ENST00000369733 VPS8Q8N3P4 1428 aa20.83■□□□□ 0.92
COL17A1-202ENST00000369733 CARD11Q9BXL7 1154 aa20.82■□□□□ 0.92
COL17A1-202ENST00000369733 GOLGA6L22H0YM25 854 aa20.81■□□□□ 0.92
COL17A1-202ENST00000369733 RGS3P49796 1198 aa20.81■□□□□ 0.92
COL17A1-202ENST00000369733 NAP1L5Q96NT1 182 aaPredicted RBP20.81■□□□□ 0.92
COL17A1-202ENST00000369733 MYH16Q9H6N6 1097 aa20.81■□□□□ 0.92
COL17A1-202ENST00000369733 SETD5Q9C0A6 1442 aa20.78■□□□□ 0.92
COL17A1-202ENST00000369733 CECR2Q9BXF3 1484 aa20.76■□□□□ 0.91
COL17A1-202ENST00000369733 RGL3Q3MIN7 710 aa20.76■□□□□ 0.91
COL17A1-202ENST00000369733 KNSTRNQ9Y448 316 aa20.75■□□□□ 0.91
COL17A1-202ENST00000369733 NCLP19338 710 aaKnown RBP20.73■□□□□ 0.91
COL17A1-202ENST00000369733 HSPA5P11021 654 aaKnown RBP20.72■□□□□ 0.91
COL17A1-202ENST00000369733 BAZ1AQ9NRL2 1556 aaPredicted RBP20.71■□□□□ 0.91
COL17A1-202ENST00000369733 KANK4Q5T7N3 995 aaPredicted RBP20.71■□□□□ 0.91
COL17A1-202ENST00000369733 STAG3Q9UJ98 1225 aa20.7■□□□□ 0.9
COL17A1-202ENST00000369733 BAZ1BQ9UIG0 1483 aaKnown RBP20.69■□□□□ 0.9
COL17A1-202ENST00000369733 ABCC8Q09428 1581 aa20.67■□□□□ 0.9
COL17A1-202ENST00000369733 NACADO15069 1562 aa20.67■□□□□ 0.9
COL17A1-202ENST00000369733 RAB3GAP2Q9H2M9 1393 aa20.67■□□□□ 0.9
COL17A1-202ENST00000369733 CDCA8Q53HL2 280 aa20.67■□□□□ 0.9
COL17A1-202ENST00000369733 FHAD1B1AJZ9 1412 aa20.66■□□□□ 0.9
COL17A1-202ENST00000369733 CCDC88BA6NC98 1476 aa20.66■□□□□ 0.9
COL17A1-202ENST00000369733 FTSJ3Q8IY81 847 aaKnown RBP20.66■□□□□ 0.9
COL17A1-202ENST00000369733 CC2D1BQ5T0F9 858 aaKnown RBP20.65■□□□□ 0.9
COL17A1-202ENST00000369733 PTMAP06454 111 aaKnown RBP20.64■□□□□ 0.89
COL17A1-202ENST00000369733 CFDP1Q9UEE9 299 aaPredicted RBP20.64■□□□□ 0.89
COL17A1-202ENST00000369733 CFAP53Q96M91 514 aa20.62■□□□□ 0.89
COL17A1-202ENST00000369733 FRAT1Q92837 279 aaPredicted RBP20.62■□□□□ 0.89
COL17A1-202ENST00000369733 NEUROD2Q15784 382 aa20.61■□□□□ 0.89
COL17A1-202ENST00000369733 TNNT2P45379 298 aaPredicted RBP20.61■□□□□ 0.89
COL17A1-202ENST00000369733 L1TD1Q5T7N2 865 aaKnown RBP20.61■□□□□ 0.89
COL17A1-202ENST00000369733 IPO9Q96P70 1041 aaKnown RBP20.6■□□□□ 0.89
COL17A1-202ENST00000369733 KCNH8Q96L42 1107 aa20.59■□□□□ 0.89
COL17A1-202ENST00000369733 DNTTIP2Q5QJE6 756 aaKnown RBP20.58■□□□□ 0.89
COL17A1-202ENST00000369733 PLEKHD1A6NEE1 506 aa20.57■□□□□ 0.88
COL17A1-202ENST00000369733 TCERG1O14776 1098 aaKnown RBP20.57■□□□□ 0.88
COL17A1-202ENST00000369733 PPP1R15AO75807 674 aaPredicted RBP20.57■□□□□ 0.88
COL17A1-202ENST00000369733 MROH2BQ7Z745 1585 aa20.56■□□□□ 0.88
COL17A1-202ENST00000369733 CHMP7Q8WUX9 453 aaPredicted RBP20.56■□□□□ 0.88
COL17A1-202ENST00000369733 ARHGAP35Q9NRY4 1499 aa20.55■□□□□ 0.88
COL17A1-202ENST00000369733 HSP90AB1P08238 724 aaKnown RBP20.54■□□□□ 0.88
COL17A1-202ENST00000369733 CASC1Q6TDU7 716 aa20.53■□□□□ 0.88
COL17A1-202ENST00000369733 RCAN3Q9UKA8 241 aa20.53■□□□□ 0.88
COL17A1-202ENST00000369733 ESF1Q9H501 851 aaKnown RBP20.53■□□□□ 0.88
COL17A1-202ENST00000369733 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.52■□□□□ 0.88
COL17A1-202ENST00000369733 DHX57Q6P158 1386 aaKnown RBP20.51■□□□□ 0.87
COL17A1-202ENST00000369733 NUDCQ9Y266 331 aa20.5■□□□□ 0.87
COL17A1-202ENST00000369733 CARMIL1Q5VZK9 1371 aa20.5■□□□□ 0.87
COL17A1-202ENST00000369733 HSCBQ8IWL3 235 aa20.49■□□□□ 0.87
COL17A1-202ENST00000369733 DCAF11Q8TEB1 546 aa20.49■□□□□ 0.87
COL17A1-202ENST00000369733 SPRYD3Q8NCJ5 442 aa20.47■□□□□ 0.87
COL17A1-202ENST00000369733 TMF1P82094 1093 aa20.47■□□□□ 0.87
COL17A1-202ENST00000369733 TPRNQ4KMQ1 711 aa20.46■□□□□ 0.87
COL17A1-202ENST00000369733 MS4A1P11836 297 aa20.45■□□□□ 0.86
COL17A1-202ENST00000369733 MAPK8IP3Q9UPT6 1336 aa20.45■□□□□ 0.86
COL17A1-202ENST00000369733 FOXD1Q16676 465 aa20.45■□□□□ 0.86
COL17A1-202ENST00000369733 CUX2O14529 1486 aa20.44■□□□□ 0.86
COL17A1-202ENST00000369733 KTN1Q86UP2 1357 aaKnown RBP20.44■□□□□ 0.86
COL17A1-202ENST00000369733 SENP3Q9H4L4 574 aaPredicted RBP20.43■□□□□ 0.86
COL17A1-202ENST00000369733 FANCIQ9NVI1 1328 aa20.43■□□□□ 0.86
COL17A1-202ENST00000369733 NPM1P06748 294 aaKnown RBP eCLIP20.42■□□□□ 0.86
COL17A1-202ENST00000369733 MSNP26038 577 aaKnown RBP20.4■□□□□ 0.86
COL17A1-202ENST00000369733 RALBP1Q15311 655 aa20.4■□□□□ 0.86
COL17A1-202ENST00000369733 MPHOSPH9Q99550 1183 aa20.38■□□□□ 0.85
COL17A1-202ENST00000369733 SLKQ9H2G2 1235 aaPredicted RBP20.38■□□□□ 0.85
COL17A1-202ENST00000369733 CHMP4BQ9H444 224 aaKnown RBP20.38■□□□□ 0.85
COL17A1-202ENST00000369733 PLCB2Q00722 1185 aa20.37■□□□□ 0.85
COL17A1-202ENST00000369733 PNNQ9H307 717 aaKnown RBP20.35■□□□□ 0.85
COL17A1-202ENST00000369733 GZF1Q9H116 711 aaPredicted RBP20.35■□□□□ 0.85
COL17A1-202ENST00000369733 ARID4BQ4LE39 1312 aaPredicted RBP20.35■□□□□ 0.85
COL17A1-202ENST00000369733 USP35Q9P2H5 1018 aa20.34■□□□□ 0.85
COL17A1-202ENST00000369733 PKD2Q13563 968 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms