RNA–Protein interactions for RNA: ENST00000361716.7

VAMP1-201, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 1 (best) BASIC

Gene VAMP1, Length 3,449 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-201ENST00000361716 CCDC136Q96JN2 1154 aa17.82■□□□□ 0.44
VAMP1-201ENST00000361716 SIN3AQ96ST3 1273 aa17.81■□□□□ 0.44
VAMP1-201ENST00000361716 BIVM-ERCC5R4GMW8 1640 aa17.79■□□□□ 0.44
VAMP1-201ENST00000361716 CFTRP13569 1480 aa17.78■□□□□ 0.44
VAMP1-201ENST00000361716 ANP32CO43423 234 aa17.76■□□□□ 0.43
VAMP1-201ENST00000361716 TOP2BQ02880 1626 aa17.76■□□□□ 0.43
VAMP1-201ENST00000361716 HNRNPUQ00839 825 aaKnown RBP eCLIP17.73■□□□□ 0.43
VAMP1-201ENST00000361716 DHX57Q6P158 1386 aaKnown RBP17.72■□□□□ 0.43
VAMP1-201ENST00000361716 EEA1Q15075 1411 aa17.71■□□□□ 0.43
VAMP1-201ENST00000361716 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.7■□□□□ 0.42
VAMP1-201ENST00000361716 VPS8Q8N3P4 1428 aa17.7■□□□□ 0.42
VAMP1-201ENST00000361716 CEP164Q9UPV0 1460 aa17.7■□□□□ 0.42
VAMP1-201ENST00000361716 RAPGEF2Q9Y4G8 1499 aa17.7■□□□□ 0.42
VAMP1-201ENST00000361716 CADPSQ9ULU8 1353 aa17.7■□□□□ 0.42
VAMP1-201ENST00000361716 SALL2Q9Y467 1007 aaPredicted RBP17.69■□□□□ 0.42
VAMP1-201ENST00000361716 RTL5Q5HYW3 569 aaPredicted RBP17.68■□□□□ 0.42
VAMP1-201ENST00000361716 SENP3-EIF4A1A0A087X0R7 540 aa17.65■□□□□ 0.42
VAMP1-201ENST00000361716 B4GALNT3Q6L9W6 998 aa17.63■□□□□ 0.41
VAMP1-201ENST00000361716 POLR3GLQ9BT43 218 aa17.63■□□□□ 0.41
VAMP1-201ENST00000361716 CUX1P39880 1505 aa17.63■□□□□ 0.41
VAMP1-201ENST00000361716 FANCIQ9NVI1 1328 aa17.61■□□□□ 0.41
VAMP1-201ENST00000361716 EIF5BO60841 1220 aaKnown RBP17.57■□□□□ 0.4
VAMP1-201ENST00000361716 KIF21BO75037 1637 aa17.57■□□□□ 0.4
VAMP1-201ENST00000361716 FANCD2Q9BXW9 1451 aa17.56■□□□□ 0.4
VAMP1-201ENST00000361716 NOP58Q9Y2X3 529 aaKnown RBP17.56■□□□□ 0.4
VAMP1-201ENST00000361716 MYT1LQ9UL68 1186 aa17.55■□□□□ 0.4
VAMP1-201ENST00000361716 PAK3O75914 559 aaPredicted RBP17.54■□□□□ 0.4
VAMP1-201ENST00000361716 IL27Q8NEV9 243 aa17.54■□□□□ 0.4
VAMP1-201ENST00000361716 ARID3CA6NKF2 412 aa17.54■□□□□ 0.4
VAMP1-201ENST00000361716 NPM2Q86SE8 214 aaKnown RBP17.53■□□□□ 0.4
VAMP1-201ENST00000361716 CCNB3Q8WWL7 1395 aa17.5■□□□□ 0.39
VAMP1-201ENST00000361716 RAD54L2Q9Y4B4 1467 aa17.5■□□□□ 0.39
VAMP1-201ENST00000361716 RAB3GAP2Q9H2M9 1393 aa17.49■□□□□ 0.39
VAMP1-201ENST00000361716 FAM9BQ8IZU0 186 aa17.48■□□□□ 0.39
VAMP1-201ENST00000361716 TDRD9Q8NDG6 1382 aaKnown RBP17.47■□□□□ 0.39
VAMP1-201ENST00000361716 CUX2O14529 1486 aa17.46■□□□□ 0.39
VAMP1-201ENST00000361716 ANP32AP39687 249 aaKnown RBP17.45■□□□□ 0.38
VAMP1-201ENST00000361716 CHIC2Q9UKJ5 165 aa17.44■□□□□ 0.38
VAMP1-201ENST00000361716 PPP4R2Q9NY27 417 aa17.44■□□□□ 0.38
VAMP1-201ENST00000361716 ZBTB47Q9UFB7 747 aaPredicted RBP17.43■□□□□ 0.38
VAMP1-201ENST00000361716 FGD5Q6ZNL6 1462 aa17.42■□□□□ 0.38
VAMP1-201ENST00000361716 LAMC3Q9Y6N6 1575 aa17.42■□□□□ 0.38
VAMP1-201ENST00000361716 LAS1LQ9Y4W2 734 aaKnown RBP17.42■□□□□ 0.38
VAMP1-201ENST00000361716 PPP1R15AO75807 674 aaPredicted RBP17.41■□□□□ 0.38
VAMP1-201ENST00000361716 TONSLQ96HA7 1378 aa17.4■□□□□ 0.38
VAMP1-201ENST00000361716 FBLN2P98095 1184 aa17.4■□□□□ 0.38
VAMP1-201ENST00000361716 CCER2I3L3R5 266 aa17.4■□□□□ 0.38
VAMP1-201ENST00000361716 PRXQ9BXM0 1461 aa17.39■□□□□ 0.37
VAMP1-201ENST00000361716 ERICH3Q5RHP9 1530 aa17.37■□□□□ 0.37
VAMP1-201ENST00000361716 ZNF326Q5BKZ1 582 aaKnown RBP17.36■□□□□ 0.37
VAMP1-201ENST00000361716 KIF27Q86VH2 1401 aa17.35■□□□□ 0.37
VAMP1-201ENST00000361716 ERCC6Q03468 1493 aa17.35■□□□□ 0.37
VAMP1-201ENST00000361716 DNMBPQ6XZF7 1577 aa17.34■□□□□ 0.37
VAMP1-201ENST00000361716 PDS5BQ9NTI5 1447 aa17.33■□□□□ 0.36
VAMP1-201ENST00000361716 RRP7BPQ9NSQ0 103 aa17.33■□□□□ 0.36
VAMP1-201ENST00000361716 ARAP1Q96P48 1450 aa17.32■□□□□ 0.36
VAMP1-201ENST00000361716 WDR97A6NE52 1622 aa17.3■□□□□ 0.36
VAMP1-201ENST00000361716 URB2Q14146 1524 aaKnown RBP17.3■□□□□ 0.36
VAMP1-201ENST00000361716 TOPBP1Q92547 1522 aa17.29■□□□□ 0.36
VAMP1-201ENST00000361716 NEFMP07197 916 aa17.29■□□□□ 0.36
VAMP1-201ENST00000361716 POLA1P09884 1462 aaPredicted RBP17.28■□□□□ 0.36
VAMP1-201ENST00000361716 SETD5Q9C0A6 1442 aa17.28■□□□□ 0.36
VAMP1-201ENST00000361716 KIF21AQ7Z4S6 1674 aa17.27■□□□□ 0.36
VAMP1-201ENST00000361716 IGF1RP08069 1367 aa17.27■□□□□ 0.36
VAMP1-201ENST00000361716 MRS2Q9HD23 443 aa17.26■□□□□ 0.35
VAMP1-201ENST00000361716 FOXD1Q16676 465 aa17.25■□□□□ 0.35
VAMP1-201ENST00000361716 ERICH6BQ5W0A0 696 aa17.25■□□□□ 0.35
VAMP1-201ENST00000361716 CARMIL1Q5VZK9 1371 aa17.25■□□□□ 0.35
VAMP1-201ENST00000361716 IPO9Q96P70 1041 aaKnown RBP17.24■□□□□ 0.35
VAMP1-201ENST00000361716 AQRO60306 1485 aaKnown RBP eCLIP17.24■□□□□ 0.35
VAMP1-201ENST00000361716 CCDC184Q52MB2 194 aa17.24■□□□□ 0.35
VAMP1-201ENST00000361716 ABCA10Q8WWZ4 1543 aa17.21■□□□□ 0.35
VAMP1-201ENST00000361716 PHLDB1Q86UU1 1377 aa17.19■□□□□ 0.34
VAMP1-201ENST00000361716 BRPF3Q9ULD4 1205 aa17.18■□□□□ 0.34
VAMP1-201ENST00000361716 HSPA5P11021 654 aaKnown RBP17.15■□□□□ 0.34
VAMP1-201ENST00000361716 TIMELESSQ9UNS1 1208 aa17.14■□□□□ 0.33
VAMP1-201ENST00000361716 MTUS2Q5JR59 1369 aa17.14■□□□□ 0.33
VAMP1-201ENST00000361716 ABCA5Q8WWZ7 1642 aa17.13■□□□□ 0.33
VAMP1-201ENST00000361716 RRBP1Q9P2E9 1410 aaKnown RBP17.13■□□□□ 0.33
VAMP1-201ENST00000361716 TARBP1Q13395 1621 aaKnown RBP17.12■□□□□ 0.33
VAMP1-201ENST00000361716 ZNF608Q9ULD9 1512 aaPredicted RBP17.11■□□□□ 0.33
VAMP1-201ENST00000361716 ARHGAP35Q9NRY4 1499 aa17.11■□□□□ 0.33
VAMP1-201ENST00000361716 EIF4G2P78344 907 aaKnown RBP eCLIP17.11■□□□□ 0.33
VAMP1-201ENST00000361716 DAXXQ9UER7 740 aaPredicted RBP17.1■□□□□ 0.33
VAMP1-201ENST00000361716 FHOD3Q2V2M9 1422 aa17.09■□□□□ 0.33
VAMP1-201ENST00000361716 CUL7Q14999 1698 aa17.07■□□□□ 0.32
VAMP1-201ENST00000361716 GAPVD1Q14C86 1478 aa17.06■□□□□ 0.32
VAMP1-201ENST00000361716 MAPKBP1O60336 1514 aa17.05■□□□□ 0.32
VAMP1-201ENST00000361716 CHMP7Q8WUX9 453 aaPredicted RBP17.05■□□□□ 0.32
VAMP1-201ENST00000361716 UBE2Q2Q8WVN8 375 aa17.05■□□□□ 0.32
VAMP1-201ENST00000361716 SLC4A3P48751 1232 aa17.05■□□□□ 0.32
VAMP1-201ENST00000361716 ARXQ96QS3 562 aa17.05■□□□□ 0.32
VAMP1-201ENST00000361716 MRC2Q9UBG0 1479 aa17.04■□□□□ 0.32
VAMP1-201ENST00000361716 ZNF777Q9ULD5 760 aaPredicted RBP17.02■□□□□ 0.32
VAMP1-201ENST00000361716 AKNAQ7Z591 1439 aa17.01■□□□□ 0.31
VAMP1-201ENST00000361716 WASHC2AQ641Q2 1341 aa16.99■□□□□ 0.31
VAMP1-201ENST00000361716 L3MBTL2Q969R5 705 aa16.99■□□□□ 0.31
VAMP1-201ENST00000361716 WDR62O43379 1518 aa16.98■□□□□ 0.31
VAMP1-201ENST00000361716 CTTNBP2Q8WZ74 1663 aa16.98■□□□□ 0.31
VAMP1-201ENST00000361716 KDM2AQ9Y2K7 1162 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms