RNA–Protein interactions for RNA: ENST00000361545.9

CLIP2-202, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

TSL 1 (best) BASIC

Gene CLIP2, Length 5,445 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-202ENST00000361545 EEA1Q15075 1411 aa25.11■■□□□ 1.61
CLIP2-202ENST00000361545 CEP162Q5TB80 1403 aa25.11■■□□□ 1.61
CLIP2-202ENST00000361545 ZBTB7CA1YPR0 619 aa25.08■■□□□ 1.61
CLIP2-202ENST00000361545 C14orf37Q86TY3 774 aa25.07■■□□□ 1.6
CLIP2-202ENST00000361545 A0A0G2JS52 829 aa25.07■■□□□ 1.6
CLIP2-202ENST00000361545 WDR43Q15061 677 aaKnown RBP eCLIP25.07■■□□□ 1.6
CLIP2-202ENST00000361545 NPM2Q86SE8 214 aaKnown RBP25.06■■□□□ 1.6
CLIP2-202ENST00000361545 ACIN1Q9UKV3 1341 aaKnown RBP25.06■■□□□ 1.6
CLIP2-202ENST00000361545 CECR2Q9BXF3 1484 aa25.05■■□□□ 1.6
CLIP2-202ENST00000361545 FKBP8Q14318 412 aa25.03■■□□□ 1.6
CLIP2-202ENST00000361545 MRS2Q9HD23 443 aa25.02■■□□□ 1.6
CLIP2-202ENST00000361545 BAZ1AQ9NRL2 1556 aaPredicted RBP25.01■■□□□ 1.59
CLIP2-202ENST00000361545 EIF4G2P78344 907 aaKnown RBP eCLIP24.98■■□□□ 1.59
CLIP2-202ENST00000361545 ANP32AP39687 249 aaKnown RBP24.95■■□□□ 1.58
CLIP2-202ENST00000361545 MYO15BQ96JP2 1530 aa24.94■■□□□ 1.58
CLIP2-202ENST00000361545 CEP164Q9UPV0 1460 aa24.92■■□□□ 1.58
CLIP2-202ENST00000361545 TRHP20396 242 aaPredicted RBP24.87■■□□□ 1.57
CLIP2-202ENST00000361545 TNIKQ9UKE5 1360 aa24.87■■□□□ 1.57
CLIP2-202ENST00000361545 EIF4G1Q04637 1599 aaKnown RBP24.85■■□□□ 1.57
CLIP2-202ENST00000361545 CUX2O14529 1486 aa24.84■■□□□ 1.57
CLIP2-202ENST00000361545 HSP90AA1P07900 732 aaKnown RBP24.84■■□□□ 1.57
CLIP2-202ENST00000361545 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.82■■□□□ 1.56
CLIP2-202ENST00000361545 HAP1P54257 671 aaPredicted RBP24.81■■□□□ 1.56
CLIP2-202ENST00000361545 CARMIL1Q5VZK9 1371 aa24.81■■□□□ 1.56
CLIP2-202ENST00000361545 CCDC136Q96JN2 1154 aa24.78■■□□□ 1.56
CLIP2-202ENST00000361545 UPF2Q9HAU5 1272 aaKnown RBP24.78■■□□□ 1.56
CLIP2-202ENST00000361545 PPM1GO15355 546 aaPredicted RBP24.77■■□□□ 1.56
CLIP2-202ENST00000361545 CARD11Q9BXL7 1154 aa24.76■■□□□ 1.55
CLIP2-202ENST00000361545 SENP3-EIF4A1A0A087X0R7 540 aa24.76■■□□□ 1.55
CLIP2-202ENST00000361545 CCNB3Q8WWL7 1395 aa24.75■■□□□ 1.55
CLIP2-202ENST00000361545 MLECQ14165 292 aa24.75■■□□□ 1.55
CLIP2-202ENST00000361545 MIER1Q8N108 512 aa24.75■■□□□ 1.55
CLIP2-202ENST00000361545 SOGA1O94964 1423 aa24.71■■□□□ 1.55
CLIP2-202ENST00000361545 IRX6P78412 446 aaPredicted RBP24.71■■□□□ 1.55
CLIP2-202ENST00000361545 LMOD2Q6P5Q4 547 aa24.71■■□□□ 1.55
CLIP2-202ENST00000361545 POGKQ9P215 609 aa24.7■■□□□ 1.54
CLIP2-202ENST00000361545 KNSTRNQ9Y448 316 aa24.69■■□□□ 1.54
CLIP2-202ENST00000361545 SIN3AQ96ST3 1273 aa24.68■■□□□ 1.54
CLIP2-202ENST00000361545 CDCA8Q53HL2 280 aa24.67■■□□□ 1.54
CLIP2-202ENST00000361545 MROH2BQ7Z745 1585 aa24.64■■□□□ 1.53
CLIP2-202ENST00000361545 CFAP53Q96M91 514 aa24.64■■□□□ 1.53
CLIP2-202ENST00000361545 FHAD1B1AJZ9 1412 aa24.63■■□□□ 1.53
CLIP2-202ENST00000361545 TDRD9Q8NDG6 1382 aaKnown RBP24.62■■□□□ 1.53
CLIP2-202ENST00000361545 MYH16Q9H6N6 1097 aa24.62■■□□□ 1.53
CLIP2-202ENST00000361545 PDS5BQ9NTI5 1447 aa24.62■■□□□ 1.53
CLIP2-202ENST00000361545 CCDC88BA6NC98 1476 aa24.61■■□□□ 1.53
CLIP2-202ENST00000361545 ARXQ96QS3 562 aa24.6■■□□□ 1.53
CLIP2-202ENST00000361545 TNNT2P45379 298 aaPredicted RBP24.56■■□□□ 1.52
CLIP2-202ENST00000361545 NEUROD2Q15784 382 aa24.56■■□□□ 1.52
CLIP2-202ENST00000361545 GGT6Q6P531 493 aa24.55■■□□□ 1.52
CLIP2-202ENST00000361545 DCAF11Q8TEB1 546 aa24.53■■□□□ 1.52
CLIP2-202ENST00000361545 SMARCA2P51531 1590 aa24.53■■□□□ 1.52
CLIP2-202ENST00000361545 ABCC8Q09428 1581 aa24.52■■□□□ 1.52
CLIP2-202ENST00000361545 KANK1Q14678 1352 aa24.51■■□□□ 1.51
CLIP2-202ENST00000361545 CARMIL2Q6F5E8 1435 aa24.48■■□□□ 1.51
CLIP2-202ENST00000361545 LAS1LQ9Y4W2 734 aaKnown RBP24.48■■□□□ 1.51
CLIP2-202ENST00000361545 SAFB2Q14151 953 aaKnown RBP eCLIP24.45■■□□□ 1.51
CLIP2-202ENST00000361545 CC2D1BQ5T0F9 858 aaKnown RBP24.45■■□□□ 1.5
CLIP2-202ENST00000361545 MAPK8IP3Q9UPT6 1336 aa24.44■■□□□ 1.5
CLIP2-202ENST00000361545 ANP32BQ92688 251 aaKnown RBP24.44■■□□□ 1.5
CLIP2-202ENST00000361545 NUDCQ9Y266 331 aa24.42■■□□□ 1.5
CLIP2-202ENST00000361545 SOX12O15370 315 aa24.41■■□□□ 1.5
CLIP2-202ENST00000361545 KANK4Q5T7N3 995 aaPredicted RBP24.39■■□□□ 1.5
CLIP2-202ENST00000361545 HDGFP51858 240 aaKnown RBP24.39■■□□□ 1.49
CLIP2-202ENST00000361545 U2SURPO15042 1029 aaKnown RBP24.38■■□□□ 1.49
CLIP2-202ENST00000361545 SRPK2P78362 688 aaKnown RBP24.37■■□□□ 1.49
CLIP2-202ENST00000361545 FOXD1Q16676 465 aa24.36■■□□□ 1.49
CLIP2-202ENST00000361545 PKD2Q13563 968 aa24.35■■□□□ 1.49
CLIP2-202ENST00000361545 STK26Q9P289 416 aa24.35■■□□□ 1.49
CLIP2-202ENST00000361545 TMF1P82094 1093 aa24.34■■□□□ 1.49
CLIP2-202ENST00000361545 ARHGAP35Q9NRY4 1499 aa24.34■■□□□ 1.49
CLIP2-202ENST00000361545 CADPSQ9ULU8 1353 aa24.33■■□□□ 1.49
CLIP2-202ENST00000361545 EFCAB2Q5VUJ9 269 aa24.33■■□□□ 1.49
CLIP2-202ENST00000361545 FTSJ3Q8IY81 847 aaKnown RBP24.33■■□□□ 1.49
CLIP2-202ENST00000361545 VPS8Q8N3P4 1428 aa24.29■■□□□ 1.48
CLIP2-202ENST00000361545 WIZO95785 1651 aa24.26■■□□□ 1.47
CLIP2-202ENST00000361545 NBR1Q14596 966 aa24.25■■□□□ 1.47
CLIP2-202ENST00000361545 FRAT1Q92837 279 aaPredicted RBP24.25■■□□□ 1.47
CLIP2-202ENST00000361545 NPHP1O15259 732 aa24.24■■□□□ 1.47
CLIP2-202ENST00000361545 EIF5BO60841 1220 aaKnown RBP24.24■■□□□ 1.47
CLIP2-202ENST00000361545 SUPT16HQ9Y5B9 1047 aaKnown RBP24.24■■□□□ 1.47
CLIP2-202ENST00000361545 FMN1Q68DA7 1419 aa24.23■■□□□ 1.47
CLIP2-202ENST00000361545 SETD5Q9C0A6 1442 aa24.23■■□□□ 1.47
CLIP2-202ENST00000361545 KIF3BO15066 747 aa24.21■■□□□ 1.47
CLIP2-202ENST00000361545 HNRNPMP52272 730 aaKnown RBP eCLIP24.21■■□□□ 1.47
CLIP2-202ENST00000361545 TOP2AP11388 1531 aaKnown RBP24.2■■□□□ 1.47
CLIP2-202ENST00000361545 NUP155O75694 1391 aa24.2■■□□□ 1.46
CLIP2-202ENST00000361545 JPH4Q96JJ6 628 aa24.19■■□□□ 1.46
CLIP2-202ENST00000361545 MORC1Q86VD1 984 aa24.19■■□□□ 1.46
CLIP2-202ENST00000361545 FHOD3Q2V2M9 1422 aa24.16■■□□□ 1.46
CLIP2-202ENST00000361545 ATAD2BQ9ULI0 1458 aa24.15■■□□□ 1.46
CLIP2-202ENST00000361545 MPHOSPH9Q99550 1183 aa24.14■■□□□ 1.46
CLIP2-202ENST00000361545 PAK3O75914 559 aaPredicted RBP24.14■■□□□ 1.45
CLIP2-202ENST00000361545 HSPA5P11021 654 aaKnown RBP24.13■■□□□ 1.45
CLIP2-202ENST00000361545 ANKRD30AQ9BXX3 1397 aa24.13■■□□□ 1.45
CLIP2-202ENST00000361545 PNNQ9H307 717 aaKnown RBP24.12■■□□□ 1.45
CLIP2-202ENST00000361545 RAPGEF2Q9Y4G8 1499 aa24.11■■□□□ 1.45
CLIP2-202ENST00000361545 NUTM2DQ5VT03 806 aaPredicted RBP24.1■■□□□ 1.45
CLIP2-202ENST00000361545 SPAG9O60271 1321 aaKnown RBP24.09■■□□□ 1.45
CLIP2-202ENST00000361545 HDGFL2Q7Z4V5 671 aaPredicted RBP24.09■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms