RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 SALL2Q9Y467 1007 aaPredicted RBP8.51□□□□□ -1.05
UPF2-201ENST00000356352 CHIC2Q9UKJ5 165 aa8.51□□□□□ -1.05
UPF2-201ENST00000356352 ZRSR1Q15695 479 aaKnown RBP8.5□□□□□ -1.05
UPF2-201ENST00000356352 EIF4G2P78344 907 aaKnown RBP eCLIP8.5□□□□□ -1.05
UPF2-201ENST00000356352 CHMP7Q8WUX9 453 aaPredicted RBP8.5□□□□□ -1.05
UPF2-201ENST00000356352 TRIM44Q96DX7 344 aaPredicted RBP8.49□□□□□ -1.05
UPF2-201ENST00000356352 KDM2AQ9Y2K7 1162 aa8.49□□□□□ -1.05
UPF2-201ENST00000356352 A0A0G2JS52 829 aa8.48□□□□□ -1.05
UPF2-201ENST00000356352 C14orf37Q86TY3 774 aa8.47□□□□□ -1.05
UPF2-201ENST00000356352 CHMP4BQ9H444 224 aaKnown RBP8.47□□□□□ -1.05
UPF2-201ENST00000356352 NBR1Q14596 966 aa8.46□□□□□ -1.05
UPF2-201ENST00000356352 ZBTB7CA1YPR0 619 aa8.46□□□□□ -1.06
UPF2-201ENST00000356352 HAP1P54257 671 aaPredicted RBP8.45□□□□□ -1.06
UPF2-201ENST00000356352 TNNT2P45379 298 aaPredicted RBP8.44□□□□□ -1.06
UPF2-201ENST00000356352 EEA1Q15075 1411 aa8.44□□□□□ -1.06
UPF2-201ENST00000356352 PLEKHD1A6NEE1 506 aa8.44□□□□□ -1.06
UPF2-201ENST00000356352 ARXQ96QS3 562 aa8.44□□□□□ -1.06
UPF2-201ENST00000356352 CLIP1P30622 1438 aa8.43□□□□□ -1.06
UPF2-201ENST00000356352 GOLGA6L6A8MZA4 724 aa8.43□□□□□ -1.06
UPF2-201ENST00000356352 KNSTRNQ9Y448 316 aa8.42□□□□□ -1.06
UPF2-201ENST00000356352 PTMAP06454 111 aaKnown RBP8.42□□□□□ -1.06
UPF2-201ENST00000356352 MS4A1P11836 297 aa8.42□□□□□ -1.06
UPF2-201ENST00000356352 FTSJ3Q8IY81 847 aaKnown RBP8.42□□□□□ -1.06
UPF2-201ENST00000356352 NUDCQ9Y266 331 aa8.42□□□□□ -1.06
UPF2-201ENST00000356352 PNNQ9H307 717 aaKnown RBP8.41□□□□□ -1.06
UPF2-201ENST00000356352 MAPK8IP3Q9UPT6 1336 aa8.41□□□□□ -1.06
UPF2-201ENST00000356352 ZCCHC6Q5VYS8 1495 aaKnown RBP8.4□□□□□ -1.06
UPF2-201ENST00000356352 GOLGA3Q08378 1498 aa8.4□□□□□ -1.06
UPF2-201ENST00000356352 PPM1GO15355 546 aaPredicted RBP8.4□□□□□ -1.07
UPF2-201ENST00000356352 NRDCO43847 1150 aa8.38□□□□□ -1.07
UPF2-201ENST00000356352 RRP7BPQ9NSQ0 103 aa8.38□□□□□ -1.07
UPF2-201ENST00000356352 ARID4BQ4LE39 1312 aaPredicted RBP8.38□□□□□ -1.07
UPF2-201ENST00000356352 CFAP44Q96MT7 982 aa8.37□□□□□ -1.07
UPF2-201ENST00000356352 KCNH8Q96L42 1107 aa8.36□□□□□ -1.07
UPF2-201ENST00000356352 DNTTIP2Q5QJE6 756 aaKnown RBP8.36□□□□□ -1.07
UPF2-201ENST00000356352 RB1CC1Q8TDY2 1594 aa8.35□□□□□ -1.07
UPF2-201ENST00000356352 ERICH6BQ5W0A0 696 aa8.35□□□□□ -1.07
UPF2-201ENST00000356352 NPHP1O15259 732 aa8.35□□□□□ -1.07
UPF2-201ENST00000356352 CARD11Q9BXL7 1154 aa8.35□□□□□ -1.07
UPF2-201ENST00000356352 CFDP1Q9UEE9 299 aaPredicted RBP8.35□□□□□ -1.07
UPF2-201ENST00000356352 CCDC180Q9P1Z9 1646 aa8.35□□□□□ -1.07
UPF2-201ENST00000356352 HDGFP51858 240 aaKnown RBP8.35□□□□□ -1.07
UPF2-201ENST00000356352 POGKQ9P215 609 aa8.35□□□□□ -1.07
UPF2-201ENST00000356352 IRX6P78412 446 aaPredicted RBP8.34□□□□□ -1.07
UPF2-201ENST00000356352 OS9Q13438 667 aaPredicted RBP8.33□□□□□ -1.08
UPF2-201ENST00000356352 KANK1Q14678 1352 aa8.33□□□□□ -1.08
UPF2-201ENST00000356352 L1TD1Q5T7N2 865 aaKnown RBP8.33□□□□□ -1.08
UPF2-201ENST00000356352 RGL3Q3MIN7 710 aa8.33□□□□□ -1.08
UPF2-201ENST00000356352 FGD1P98174 961 aa8.32□□□□□ -1.08
UPF2-201ENST00000356352 GOLGA2Q08379 1002 aa8.32□□□□□ -1.08
UPF2-201ENST00000356352 PLEKHG5O94827 1062 aa8.32□□□□□ -1.08
UPF2-201ENST00000356352 MIER1Q8N108 512 aa8.32□□□□□ -1.08
UPF2-201ENST00000356352 KIF27Q86VH2 1401 aa8.32□□□□□ -1.08
UPF2-201ENST00000356352 HSP90AB1P08238 724 aaKnown RBP8.31□□□□□ -1.08
UPF2-201ENST00000356352 MCCP23508 829 aa8.31□□□□□ -1.08
UPF2-201ENST00000356352 LAS1LQ9Y4W2 734 aaKnown RBP8.31□□□□□ -1.08
UPF2-201ENST00000356352 KCNJ4P48050 445 aa8.3□□□□□ -1.08
UPF2-201ENST00000356352 CEP162Q5TB80 1403 aa8.3□□□□□ -1.08
UPF2-201ENST00000356352 CEP164Q9UPV0 1460 aa8.3□□□□□ -1.08
UPF2-201ENST00000356352 PPP4R2Q9NY27 417 aa8.3□□□□□ -1.08
UPF2-201ENST00000356352 CHAF1AQ13111 956 aaPredicted RBP8.29□□□□□ -1.08
UPF2-201ENST00000356352 GOLGA6L4A6NEF3 574 aa8.29□□□□□ -1.08
UPF2-201ENST00000356352 TULP1O00294 542 aaPredicted RBP8.29□□□□□ -1.08
UPF2-201ENST00000356352 TMF1P82094 1093 aa8.29□□□□□ -1.08
UPF2-201ENST00000356352 PTMSP20962 102 aa8.28□□□□□ -1.08
UPF2-201ENST00000356352 HSCBQ8IWL3 235 aa8.28□□□□□ -1.08
UPF2-201ENST00000356352 HIRIP3Q9BW71 556 aaPredicted RBP8.28□□□□□ -1.08
UPF2-201ENST00000356352 WRNQ14191 1432 aaPredicted RBP eCLIP8.28□□□□□ -1.08
UPF2-201ENST00000356352 BAZ1BQ9UIG0 1483 aaKnown RBP8.28□□□□□ -1.08
UPF2-201ENST00000356352 LMOD2Q6P5Q4 547 aa8.27□□□□□ -1.08
UPF2-201ENST00000356352 CCNB3Q8WWL7 1395 aa8.27□□□□□ -1.09
UPF2-201ENST00000356352 FHAD1B1AJZ9 1412 aa8.27□□□□□ -1.09
UPF2-201ENST00000356352 FRAT1Q92837 279 aaPredicted RBP8.26□□□□□ -1.09
UPF2-201ENST00000356352 NEUROD2Q15784 382 aa8.26□□□□□ -1.09
UPF2-201ENST00000356352 PLCB2Q00722 1185 aa8.26□□□□□ -1.09
UPF2-201ENST00000356352 CHMP4AQ9BY43 222 aa8.26□□□□□ -1.09
UPF2-201ENST00000356352 TNIKQ9UKE5 1360 aa8.26□□□□□ -1.09
UPF2-201ENST00000356352 NAP1L5Q96NT1 182 aaPredicted RBP8.26□□□□□ -1.09
UPF2-201ENST00000356352 SENP3Q9H4L4 574 aaPredicted RBP8.26□□□□□ -1.09
UPF2-201ENST00000356352 NAP1L2Q9ULW6 460 aaPredicted RBP8.25□□□□□ -1.09
UPF2-201ENST00000356352 ERCC6Q03468 1493 aa8.25□□□□□ -1.09
UPF2-201ENST00000356352 U2SURPO15042 1029 aaKnown RBP8.25□□□□□ -1.09
UPF2-201ENST00000356352 CALD1Q05682 793 aaKnown RBP8.24□□□□□ -1.09
UPF2-201ENST00000356352 TIMELESSQ9UNS1 1208 aa8.24□□□□□ -1.09
UPF2-201ENST00000356352 NOP58Q9Y2X3 529 aaKnown RBP8.24□□□□□ -1.09
UPF2-201ENST00000356352 SUPT16HQ9Y5B9 1047 aaKnown RBP8.24□□□□□ -1.09
UPF2-201ENST00000356352 TPRNQ4KMQ1 711 aa8.24□□□□□ -1.09
UPF2-201ENST00000356352 RGS3P49796 1198 aa8.24□□□□□ -1.09
UPF2-201ENST00000356352 KIAA2012Q0VF49 1180 aa8.23□□□□□ -1.09
UPF2-201ENST00000356352 RTF1Q92541 710 aaKnown RBP8.23□□□□□ -1.09
UPF2-201ENST00000356352 HTATSF1O43719 755 aaKnown RBP8.23□□□□□ -1.09
UPF2-201ENST00000356352 IPO8O15397 1037 aaKnown RBP8.22□□□□□ -1.09
UPF2-201ENST00000356352 MSNP26038 577 aaKnown RBP8.22□□□□□ -1.09
UPF2-201ENST00000356352 CLSTN1O94985 981 aa8.22□□□□□ -1.09
UPF2-201ENST00000356352 GNL2Q13823 731 aaKnown RBP8.22□□□□□ -1.09
UPF2-201ENST00000356352 CC2D1BQ5T0F9 858 aaKnown RBP8.22□□□□□ -1.09
UPF2-201ENST00000356352 NACADO15069 1562 aa8.22□□□□□ -1.09
UPF2-201ENST00000356352 HDGFL2Q7Z4V5 671 aaPredicted RBP8.21□□□□□ -1.1
UPF2-201ENST00000356352 MORC1Q86VD1 984 aa8.21□□□□□ -1.1
UPF2-201ENST00000356352 SRPK2P78362 688 aaKnown RBP8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms