RNA–Protein interactions for RNA: ENST00000340660.10

ATXN3-201, Transcript of ataxin 3, humanhuman

TSL 1 (best) BASIC

Gene ATXN3, Length 1,205 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-201ENST00000340660 ERCC6L2Q5T890 1561 aa22.92■■□□□ 1.26
ATXN3-201ENST00000340660 LMTK3Q96Q04 1460 aa22.88■■□□□ 1.25
ATXN3-201ENST00000340660 FOXD4L1Q9NU39 408 aa22.88■■□□□ 1.25
ATXN3-201ENST00000340660 TOPBP1Q92547 1522 aa22.87■■□□□ 1.25
ATXN3-201ENST00000340660 HECW2Q9P2P5 1572 aa22.84■■□□□ 1.25
ATXN3-201ENST00000340660 KIF13AQ9H1H9 1805 aa22.83■■□□□ 1.25
ATXN3-201ENST00000340660 ZNF219Q9P2Y4 722 aaPredicted RBP22.81■■□□□ 1.24
ATXN3-201ENST00000340660 SYNJ1O43426 1573 aa22.8■■□□□ 1.24
ATXN3-201ENST00000340660 TARBP1Q13395 1621 aaKnown RBP22.79■■□□□ 1.24
ATXN3-201ENST00000340660 WIZO95785 1651 aa22.78■■□□□ 1.24
ATXN3-201ENST00000340660 SOCS7O14512 581 aa22.76■■□□□ 1.23
ATXN3-201ENST00000340660 ZBTB22O15209 634 aa22.71■■□□□ 1.23
ATXN3-201ENST00000340660 SNAPC4Q5SXM2 1469 aa22.7■■□□□ 1.22
ATXN3-201ENST00000340660 ILDR2Q71H61 639 aa22.69■■□□□ 1.22
ATXN3-201ENST00000340660 ABCB7O75027 752 aa22.65■■□□□ 1.22
ATXN3-201ENST00000340660 CHMP7Q8WUX9 453 aaPredicted RBP22.65■■□□□ 1.22
ATXN3-201ENST00000340660 PRDM2Q13029 1718 aa22.65■■□□□ 1.22
ATXN3-201ENST00000340660 KDM6BO15054 1643 aa22.6■■□□□ 1.21
ATXN3-201ENST00000340660 ADGRL1O94910 1474 aa22.6■■□□□ 1.21
ATXN3-201ENST00000340660 ABCC8Q09428 1581 aa22.59■■□□□ 1.21
ATXN3-201ENST00000340660 DNMBPQ6XZF7 1577 aa22.59■■□□□ 1.21
ATXN3-201ENST00000340660 TDRD9Q8NDG6 1382 aaKnown RBP22.58■■□□□ 1.21
ATXN3-201ENST00000340660 SYNJ2O15056 1496 aa22.56■■□□□ 1.2
ATXN3-201ENST00000340660 FAM69CQ0P6D2 419 aa22.53■■□□□ 1.2
ATXN3-201ENST00000340660 POLA1P09884 1462 aaPredicted RBP22.53■■□□□ 1.2
ATXN3-201ENST00000340660 MAGI1Q96QZ7 1491 aaPredicted RBP22.52■■□□□ 1.2
ATXN3-201ENST00000340660 RAD54L2Q9Y4B4 1467 aa22.51■■□□□ 1.19
ATXN3-201ENST00000340660 ABCC10Q5T3U5 1492 aa22.5■■□□□ 1.19
ATXN3-201ENST00000340660 ATF5Q9Y2D1 282 aaPredicted RBP22.44■■□□□ 1.18
ATXN3-201ENST00000340660 DIP2BQ9P265 1576 aa22.39■■□□□ 1.18
ATXN3-201ENST00000340660 DISP3Q9P2K9 1392 aa22.38■■□□□ 1.17
ATXN3-201ENST00000340660 SOGA1O94964 1423 aa22.36■■□□□ 1.17
ATXN3-201ENST00000340660 TOP2AP11388 1531 aaKnown RBP22.36■■□□□ 1.17
ATXN3-201ENST00000340660 WDR97A6NE52 1622 aa22.35■■□□□ 1.17
ATXN3-201ENST00000340660 GRIN2BQ13224 1484 aa22.35■■□□□ 1.17
ATXN3-201ENST00000340660 CEP170Q5SW79 1584 aa22.33■■□□□ 1.17
ATXN3-201ENST00000340660 POLA2Q14181 598 aa22.31■■□□□ 1.16
ATXN3-201ENST00000340660 MAPKBP1O60336 1514 aa22.27■■□□□ 1.16
ATXN3-201ENST00000340660 TSPOAP1O95153 1857 aa22.24■■□□□ 1.15
ATXN3-201ENST00000340660 SHROOM2Q13796 1616 aa22.18■■□□□ 1.14
ATXN3-201ENST00000340660 CCDC88BA6NC98 1476 aa22.15■■□□□ 1.14
ATXN3-201ENST00000340660 FGD5Q6ZNL6 1462 aa22.14■■□□□ 1.13
ATXN3-201ENST00000340660 ATXN8OSP0DMR3 200 aa22.13■■□□□ 1.13
ATXN3-201ENST00000340660 PBRM1Q86U86 1689 aa22.13■■□□□ 1.13
ATXN3-201ENST00000340660 NUP160Q12769 1436 aa22.11■■□□□ 1.13
ATXN3-201ENST00000340660 GRIN2AQ12879 1464 aa22.09■■□□□ 1.13
ATXN3-201ENST00000340660 NPM1P06748 294 aaKnown RBP eCLIP22.09■■□□□ 1.13
ATXN3-201ENST00000340660 COL17A1Q9UMD9 1497 aaPredicted RBP22.03■■□□□ 1.12
ATXN3-201ENST00000340660 SPATA31D1Q6ZQQ2 1576 aa22.03■■□□□ 1.12
ATXN3-201ENST00000340660 ADCY10Q96PN6 1610 aa22.02■■□□□ 1.11
ATXN3-201ENST00000340660 PRG4Q92954 1404 aaPredicted RBP22■■□□□ 1.11
ATXN3-201ENST00000340660 PPRC1Q5VV67 1664 aaKnown RBP21.99■■□□□ 1.11
ATXN3-201ENST00000340660 TOP2BQ02880 1626 aa21.97■■□□□ 1.11
ATXN3-201ENST00000340660 CSRNP3Q8WYN3 585 aa21.91■■□□□ 1.1
ATXN3-201ENST00000340660 ABCA5Q8WWZ7 1642 aa21.91■■□□□ 1.1
ATXN3-201ENST00000340660 CERKQ8TCT0 537 aa21.88■■□□□ 1.09
ATXN3-201ENST00000340660 CUX1P39880 1505 aa21.87■■□□□ 1.09
ATXN3-201ENST00000340660 ADAMTS12P58397 1594 aa21.87■■□□□ 1.09
ATXN3-201ENST00000340660 RBM42Q9BTD8 480 aaKnown RBP21.85■■□□□ 1.09
ATXN3-201ENST00000340660 ZBTB12Q9Y330 459 aaPredicted RBP21.85■■□□□ 1.09
ATXN3-201ENST00000340660 JPH4Q96JJ6 628 aa21.83■■□□□ 1.09
ATXN3-201ENST00000340660 ABCA10Q8WWZ4 1543 aa21.77■■□□□ 1.08
ATXN3-201ENST00000340660 GLI2P10070 1586 aa21.77■■□□□ 1.08
ATXN3-201ENST00000340660 EHMT2Q96KQ7 1210 aa21.76■■□□□ 1.07
ATXN3-201ENST00000340660 PCF11O94913 1555 aaKnown RBP21.74■■□□□ 1.07
ATXN3-201ENST00000340660 FHAD1B1AJZ9 1412 aa21.71■■□□□ 1.07
ATXN3-201ENST00000340660 PTPRMP28827 1452 aa21.7■■□□□ 1.06
ATXN3-201ENST00000340660 ASXL2Q76L83 1435 aa21.66■■□□□ 1.06
ATXN3-201ENST00000340660 KIF21BO75037 1637 aa21.62■■□□□ 1.05
ATXN3-201ENST00000340660 PLB1Q6P1J6 1458 aa21.61■■□□□ 1.05
ATXN3-201ENST00000340660 TEX14Q8IWB6 1497 aa21.61■■□□□ 1.05
ATXN3-201ENST00000340660 MAP3K4Q9Y6R4 1608 aa21.61■■□□□ 1.05
ATXN3-201ENST00000340660 RUSC2Q8N2Y8 1516 aa21.6■■□□□ 1.05
ATXN3-201ENST00000340660 HSPA2P54652 639 aa21.56■■□□□ 1.04
ATXN3-201ENST00000340660 ADAMTSL3P82987 1691 aa21.55■■□□□ 1.04
ATXN3-201ENST00000340660 ABCC2Q92887 1545 aa21.55■■□□□ 1.04
ATXN3-201ENST00000340660 EPRSP07814 1512 aaKnown RBP21.52■■□□□ 1.04
ATXN3-201ENST00000340660 POTEHQ6S545 545 aa21.49■■□□□ 1.03
ATXN3-201ENST00000340660 AKT1S1Q96B36 256 aa21.44■■□□□ 1.02
ATXN3-201ENST00000340660 ERICH3Q5RHP9 1530 aa21.44■■□□□ 1.02
ATXN3-201ENST00000340660 MKRN4PQ13434 485 aaPredicted RBP21.42■■□□□ 1.02
ATXN3-201ENST00000340660 CUL7Q14999 1698 aa21.42■■□□□ 1.02
ATXN3-201ENST00000340660 KIAA0586Q9BVV6 1533 aa21.42■■□□□ 1.02
ATXN3-201ENST00000340660 PTPRGP23470 1445 aa21.41■■□□□ 1.02
ATXN3-201ENST00000340660 MADDQ8WXG6 1647 aa21.37■■□□□ 1.01
ATXN3-201ENST00000340660 TTBK1Q5TCY1 1321 aaPredicted RBP21.35■■□□□ 1.01
ATXN3-201ENST00000340660 WRNQ14191 1432 aaPredicted RBP eCLIP21.31■■□□□ 1
ATXN3-201ENST00000340660 UHRF1BP1LA0JNW5 1464 aa21.31■■□□□ 1
ATXN3-201ENST00000340660 BCORL1Q5H9F3 1711 aa21.29■■□□□ 1
ATXN3-201ENST00000340660 CHRDL2Q6WN34 429 aa21.28■■□□□ 1
ATXN3-201ENST00000340660 MAGI3Q5TCQ9 1506 aa21.26■□□□□ 0.99
ATXN3-201ENST00000340660 REM2Q8IYK8 340 aaPredicted RBP21.25■□□□□ 0.99
ATXN3-201ENST00000340660 KDM5BQ9UGL1 1544 aa21.24■□□□□ 0.99
ATXN3-201ENST00000340660 SPDYE2BA6NHP3 402 aa21.23■□□□□ 0.99
ATXN3-201ENST00000340660 SPDYE6P0CI01 402 aa21.23■□□□□ 0.99
ATXN3-201ENST00000340660 SPDYE2Q495Y8 402 aa21.23■□□□□ 0.99
ATXN3-201ENST00000340660 TNIKQ9UKE5 1360 aa21.22■□□□□ 0.99
ATXN3-201ENST00000340660 RIMS1Q86UR5 1692 aaKnown RBP21.21■□□□□ 0.99
ATXN3-201ENST00000340660 CD109Q6YHK3 1445 aa21.2■□□□□ 0.98
ATXN3-201ENST00000340660 UACAQ9BZF9 1416 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms