RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 DEKP35659 375 aaKnown RBP8.02□□□□□ -1.13
CSMD1-201ENST00000335551 PTMSP20962 102 aa8.02□□□□□ -1.13
CSMD1-201ENST00000335551 LAS1LQ9Y4W2 734 aaKnown RBP8.01□□□□□ -1.13
CSMD1-201ENST00000335551 USP35Q9P2H5 1018 aa8.01□□□□□ -1.13
CSMD1-201ENST00000335551 DDX10Q13206 875 aaKnown RBP8□□□□□ -1.13
CSMD1-201ENST00000335551 ESF1Q9H501 851 aaKnown RBP8□□□□□ -1.13
CSMD1-201ENST00000335551 KIAA2012Q0VF49 1180 aa7.99□□□□□ -1.13
CSMD1-201ENST00000335551 SETQ01105 290 aaPredicted RBP7.98□□□□□ -1.13
CSMD1-201ENST00000335551 GOLGA6L1Q8N7Z2 621 aa7.98□□□□□ -1.13
CSMD1-201ENST00000335551 PNNQ9H307 717 aaKnown RBP7.98□□□□□ -1.13
CSMD1-201ENST00000335551 IRX6P78412 446 aaPredicted RBP7.97□□□□□ -1.13
CSMD1-201ENST00000335551 HSP90AB1P08238 724 aaKnown RBP7.97□□□□□ -1.13
CSMD1-201ENST00000335551 RSPH6AQ9H0K4 717 aa7.97□□□□□ -1.13
CSMD1-201ENST00000335551 PABPN1Q86U42 306 aaKnown RBP eCLIP7.96□□□□□ -1.13
CSMD1-201ENST00000335551 HSCBQ8IWL3 235 aa7.96□□□□□ -1.13
CSMD1-201ENST00000335551 CHMP4BQ9H444 224 aaKnown RBP7.96□□□□□ -1.14
CSMD1-201ENST00000335551 FTSJ3Q8IY81 847 aaKnown RBP7.96□□□□□ -1.14
CSMD1-201ENST00000335551 NOC3LQ8WTT2 800 aaKnown RBP7.95□□□□□ -1.14
CSMD1-201ENST00000335551 PLCB2Q00722 1185 aa7.95□□□□□ -1.14
CSMD1-201ENST00000335551 DRC7Q8IY82 874 aa7.95□□□□□ -1.14
CSMD1-201ENST00000335551 PPP4R2Q9NY27 417 aa7.95□□□□□ -1.14
CSMD1-201ENST00000335551 GOLGA6L4A6NEF3 574 aa7.94□□□□□ -1.14
CSMD1-201ENST00000335551 HSP90AA2PQ14568 343 aaPredicted RBP7.94□□□□□ -1.14
CSMD1-201ENST00000335551 SALL2Q9Y467 1007 aaPredicted RBP7.94□□□□□ -1.14
CSMD1-201ENST00000335551 FBLN2P98095 1184 aa7.94□□□□□ -1.14
CSMD1-201ENST00000335551 MIER1Q8N108 512 aa7.93□□□□□ -1.14
CSMD1-201ENST00000335551 ARID4BQ4LE39 1312 aaPredicted RBP7.93□□□□□ -1.14
CSMD1-201ENST00000335551 GBP4Q96PP9 640 aa7.92□□□□□ -1.14
CSMD1-201ENST00000335551 CFAP44Q96MT7 982 aa7.92□□□□□ -1.14
CSMD1-201ENST00000335551 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.91□□□□□ -1.14
CSMD1-201ENST00000335551 SYAP1Q96A49 352 aaPredicted RBP7.91□□□□□ -1.14
CSMD1-201ENST00000335551 MS4A1P11836 297 aa7.9□□□□□ -1.14
CSMD1-201ENST00000335551 TPRNQ4KMQ1 711 aa7.9□□□□□ -1.14
CSMD1-201ENST00000335551 MCCP23508 829 aa7.89□□□□□ -1.15
CSMD1-201ENST00000335551 FGD1P98174 961 aa7.89□□□□□ -1.15
CSMD1-201ENST00000335551 A0A0U1RQG5 324 aaPredicted RBP7.89□□□□□ -1.15
CSMD1-201ENST00000335551 STAG3Q9UJ98 1225 aa7.87□□□□□ -1.15
CSMD1-201ENST00000335551 SCRIBQ14160 1630 aa7.87□□□□□ -1.15
CSMD1-201ENST00000335551 ARID3AQ99856 593 aa7.86□□□□□ -1.15
CSMD1-201ENST00000335551 CFAP53Q96M91 514 aa7.86□□□□□ -1.15
CSMD1-201ENST00000335551 PHF14O94880 888 aa7.86□□□□□ -1.15
CSMD1-201ENST00000335551 EIF4G2P78344 907 aaKnown RBP eCLIP7.86□□□□□ -1.15
CSMD1-201ENST00000335551 SUPT16HQ9Y5B9 1047 aaKnown RBP7.86□□□□□ -1.15
CSMD1-201ENST00000335551 RGS3P49796 1198 aa7.85□□□□□ -1.15
CSMD1-201ENST00000335551 GOLGA6L3A6NEY3 463 aa7.85□□□□□ -1.15
CSMD1-201ENST00000335551 TPM4P67936 248 aa7.85□□□□□ -1.15
CSMD1-201ENST00000335551 KCNJ4P48050 445 aa7.84□□□□□ -1.15
CSMD1-201ENST00000335551 HTATSF1O43719 755 aaKnown RBP7.84□□□□□ -1.15
CSMD1-201ENST00000335551 ZNF777Q9ULD5 760 aaPredicted RBP7.84□□□□□ -1.15
CSMD1-201ENST00000335551 NPM1P06748 294 aaKnown RBP eCLIP7.84□□□□□ -1.15
CSMD1-201ENST00000335551 CDCA8Q53HL2 280 aa7.84□□□□□ -1.16
CSMD1-201ENST00000335551 TULP1O00294 542 aaPredicted RBP7.83□□□□□ -1.16
CSMD1-201ENST00000335551 DCAF8L1A6NGE4 600 aa7.83□□□□□ -1.16
CSMD1-201ENST00000335551 CCDC34Q96HJ3 373 aa7.82□□□□□ -1.16
CSMD1-201ENST00000335551 GPS2Q13227 327 aa7.82□□□□□ -1.16
CSMD1-201ENST00000335551 NOM1Q5C9Z4 860 aaKnown RBP7.82□□□□□ -1.16
CSMD1-201ENST00000335551 VSIG10Q8N0Z9 540 aa7.81□□□□□ -1.16
CSMD1-201ENST00000335551 GNL2Q13823 731 aaKnown RBP7.81□□□□□ -1.16
CSMD1-201ENST00000335551 RBM19Q9Y4C8 960 aaKnown RBP7.81□□□□□ -1.16
CSMD1-201ENST00000335551 CSPP1Q1MSJ5 1256 aa7.81□□□□□ -1.16
CSMD1-201ENST00000335551 TEX35Q5T0J7 233 aa7.8□□□□□ -1.16
CSMD1-201ENST00000335551 KRI1Q8N9T8 703 aaKnown RBP7.8□□□□□ -1.16
CSMD1-201ENST00000335551 CLSTN1O94985 981 aa7.8□□□□□ -1.16
CSMD1-201ENST00000335551 KNSTRNQ9Y448 316 aa7.8□□□□□ -1.16
CSMD1-201ENST00000335551 CSRNP3Q8WYN3 585 aa7.8□□□□□ -1.16
CSMD1-201ENST00000335551 CHGAP10645 457 aaKnown RBP7.79□□□□□ -1.16
CSMD1-201ENST00000335551 NAP1L2Q9ULW6 460 aaPredicted RBP7.79□□□□□ -1.16
CSMD1-201ENST00000335551 OS9Q13438 667 aaPredicted RBP7.79□□□□□ -1.16
CSMD1-201ENST00000335551 ZNF771Q7L3S4 317 aaPredicted RBP7.79□□□□□ -1.16
CSMD1-201ENST00000335551 APPP05067 770 aa7.79□□□□□ -1.16
CSMD1-201ENST00000335551 DDX11L8A8MPP1 907 aa7.78□□□□□ -1.16
CSMD1-201ENST00000335551 MAPK8IP3Q9UPT6 1336 aa7.78□□□□□ -1.16
CSMD1-201ENST00000335551 RB1CC1Q8TDY2 1594 aa7.77□□□□□ -1.16
CSMD1-201ENST00000335551 TPM3P06753 285 aa7.77□□□□□ -1.17
CSMD1-201ENST00000335551 CCDC70Q6NSX1 233 aa7.77□□□□□ -1.17
CSMD1-201ENST00000335551 KIAA1211Q6ZU35 1233 aa7.77□□□□□ -1.17
CSMD1-201ENST00000335551 CALD1Q05682 793 aaKnown RBP7.76□□□□□ -1.17
CSMD1-201ENST00000335551 MTERF4Q7Z6M4 381 aaKnown RBP7.76□□□□□ -1.17
CSMD1-201ENST00000335551 RRP12Q5JTH9 1297 aaKnown RBP7.76□□□□□ -1.17
CSMD1-201ENST00000335551 B4GALNT3Q6L9W6 998 aa7.76□□□□□ -1.17
CSMD1-201ENST00000335551 IPO9Q96P70 1041 aaKnown RBP7.76□□□□□ -1.17
CSMD1-201ENST00000335551 TCERG1O14776 1098 aaKnown RBP7.75□□□□□ -1.17
CSMD1-201ENST00000335551 GZF1Q9H116 711 aaPredicted RBP7.75□□□□□ -1.17
CSMD1-201ENST00000335551 GOLGA2Q08379 1002 aa7.75□□□□□ -1.17
CSMD1-201ENST00000335551 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.75□□□□□ -1.17
CSMD1-201ENST00000335551 SPRYD3Q8NCJ5 442 aa7.74□□□□□ -1.17
CSMD1-201ENST00000335551 FRAT1Q92837 279 aaPredicted RBP7.74□□□□□ -1.17
CSMD1-201ENST00000335551 CWC15Q9P013 229 aaKnown RBP7.74□□□□□ -1.17
CSMD1-201ENST00000335551 P3H3Q8IVL6 736 aa7.74□□□□□ -1.17
CSMD1-201ENST00000335551 ZBTB7CA1YPR0 619 aa7.73□□□□□ -1.17
CSMD1-201ENST00000335551 NUDCQ9Y266 331 aa7.73□□□□□ -1.17
CSMD1-201ENST00000335551 KDM2AQ9Y2K7 1162 aa7.73□□□□□ -1.17
CSMD1-201ENST00000335551 ARID3CA6NKF2 412 aa7.73□□□□□ -1.17
CSMD1-201ENST00000335551 MAP7D2Q96T17 732 aa7.73□□□□□ -1.17
CSMD1-201ENST00000335551 MTUS2Q5JR59 1369 aa7.73□□□□□ -1.17
CSMD1-201ENST00000335551 KIF16BQ96L93 1317 aa7.73□□□□□ -1.17
CSMD1-201ENST00000335551 HAP1P54257 671 aaPredicted RBP7.72□□□□□ -1.17
CSMD1-201ENST00000335551 PKNOX2Q96KN3 472 aa7.72□□□□□ -1.17
CSMD1-201ENST00000335551 SLKQ9H2G2 1235 aaPredicted RBP7.72□□□□□ -1.17
CSMD1-201ENST00000335551 FOXD1Q16676 465 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms