RNA–Protein interactions for RNA: ENST00000331920.10

PTCH1-201, Transcript of patched 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTCH1, Length 8,057 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-201ENST00000331920 TMC1Q8TDI8 760 aa21.76■■□□□ 1.07
PTCH1-201ENST00000331920 GOLGA6L22H0YM25 854 aa21.74■■□□□ 1.07
PTCH1-201ENST00000331920 BECN1Q14457 450 aa21.72■■□□□ 1.07
PTCH1-201ENST00000331920 DDX10Q13206 875 aaKnown RBP21.66■■□□□ 1.06
PTCH1-201ENST00000331920 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.65■■□□□ 1.06
PTCH1-201ENST00000331920 PRM3Q9NNZ6 103 aa21.64■■□□□ 1.05
PTCH1-201ENST00000331920 NPHP1O15259 732 aa21.64■■□□□ 1.05
PTCH1-201ENST00000331920 NAP1L2Q9ULW6 460 aaPredicted RBP21.59■■□□□ 1.05
PTCH1-201ENST00000331920 TONSLQ96HA7 1378 aa21.59■■□□□ 1.05
PTCH1-201ENST00000331920 DDRGK1Q96HY6 314 aa21.59■■□□□ 1.05
PTCH1-201ENST00000331920 HAP1P54257 671 aaPredicted RBP21.57■■□□□ 1.04
PTCH1-201ENST00000331920 CASC1Q6TDU7 716 aa21.57■■□□□ 1.04
PTCH1-201ENST00000331920 KDM2AQ9Y2K7 1162 aa21.56■■□□□ 1.04
PTCH1-201ENST00000331920 ARID4BQ4LE39 1312 aaPredicted RBP21.56■■□□□ 1.04
PTCH1-201ENST00000331920 SENP3-EIF4A1A0A087X0R7 540 aa21.56■■□□□ 1.04
PTCH1-201ENST00000331920 GOLGA6L6A8MZA4 724 aa21.55■■□□□ 1.04
PTCH1-201ENST00000331920 ANP32EQ9BTT0 268 aa21.53■■□□□ 1.04
PTCH1-201ENST00000331920 ARID3AQ99856 593 aa21.47■■□□□ 1.03
PTCH1-201ENST00000331920 FGD1P98174 961 aa21.46■■□□□ 1.03
PTCH1-201ENST00000331920 MRS2Q9HD23 443 aa21.46■■□□□ 1.03
PTCH1-201ENST00000331920 ERICH6BQ5W0A0 696 aa21.46■■□□□ 1.03
PTCH1-201ENST00000331920 LAS1LQ9Y4W2 734 aaKnown RBP21.44■■□□□ 1.02
PTCH1-201ENST00000331920 PDE4CQ08493 712 aa21.42■■□□□ 1.02
PTCH1-201ENST00000331920 PPM1GO15355 546 aaPredicted RBP21.42■■□□□ 1.02
PTCH1-201ENST00000331920 ISY1Q9ULR0 285 aaKnown RBP21.42■■□□□ 1.02
PTCH1-201ENST00000331920 NOC3LQ8WTT2 800 aaKnown RBP21.42■■□□□ 1.02
PTCH1-201ENST00000331920 DRC7Q8IY82 874 aa21.42■■□□□ 1.02
PTCH1-201ENST00000331920 CHAF1AQ13111 956 aaPredicted RBP21.4■■□□□ 1.02
PTCH1-201ENST00000331920 GOLGA2Q08379 1002 aa21.39■■□□□ 1.02
PTCH1-201ENST00000331920 FTSJ3Q8IY81 847 aaKnown RBP21.39■■□□□ 1.02
PTCH1-201ENST00000331920 HIRIP3Q9BW71 556 aaPredicted RBP21.37■■□□□ 1.01
PTCH1-201ENST00000331920 HSP90AB1P08238 724 aaKnown RBP21.36■■□□□ 1.01
PTCH1-201ENST00000331920 NRDCO43847 1150 aa21.36■■□□□ 1.01
PTCH1-201ENST00000331920 KCNJ4P48050 445 aa21.35■■□□□ 1.01
PTCH1-201ENST00000331920 CHIC2Q9UKJ5 165 aa21.34■■□□□ 1.01
PTCH1-201ENST00000331920 PABPN1Q86U42 306 aaKnown RBP eCLIP21.34■■□□□ 1.01
PTCH1-201ENST00000331920 OS9Q13438 667 aaPredicted RBP21.34■■□□□ 1.01
PTCH1-201ENST00000331920 ANO8Q9HCE9 1232 aaPredicted RBP21.33■■□□□ 1.01
PTCH1-201ENST00000331920 PNNQ9H307 717 aaKnown RBP21.31■■□□□ 1
PTCH1-201ENST00000331920 NPM1P06748 294 aaKnown RBP eCLIP21.3■■□□□ 1
PTCH1-201ENST00000331920 FBXO3Q9UK99 471 aa21.29■■□□□ 1
PTCH1-201ENST00000331920 GOLGA6L4A6NEF3 574 aa21.29■■□□□ 1
PTCH1-201ENST00000331920 MSNP26038 577 aaKnown RBP21.29■■□□□ 1
PTCH1-201ENST00000331920 PPP1R15AO75807 674 aaPredicted RBP21.28■■□□□ 1
PTCH1-201ENST00000331920 KIAA2012Q0VF49 1180 aa21.28■■□□□ 1
PTCH1-201ENST00000331920 LMOD2Q6P5Q4 547 aa21.26■□□□□ 0.99
PTCH1-201ENST00000331920 SPRYD3Q8NCJ5 442 aa21.26■□□□□ 0.99
PTCH1-201ENST00000331920 A0A0U1RQG5 324 aaPredicted RBP21.24■□□□□ 0.99
PTCH1-201ENST00000331920 TNNT3P45378 269 aaPredicted RBP21.24■□□□□ 0.99
PTCH1-201ENST00000331920 NEUROD2Q15784 382 aa21.23■□□□□ 0.99
PTCH1-201ENST00000331920 RGS3P49796 1198 aa21.22■□□□□ 0.99
PTCH1-201ENST00000331920 GNL2Q13823 731 aaKnown RBP21.2■□□□□ 0.98
PTCH1-201ENST00000331920 L1TD1Q5T7N2 865 aaKnown RBP21.19■□□□□ 0.98
PTCH1-201ENST00000331920 FRAT1Q92837 279 aaPredicted RBP21.15■□□□□ 0.98
PTCH1-201ENST00000331920 CFAP53Q96M91 514 aa21.08■□□□□ 0.96
PTCH1-201ENST00000331920 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.07■□□□□ 0.96
PTCH1-201ENST00000331920 SUPT16HQ9Y5B9 1047 aaKnown RBP21.05■□□□□ 0.96
PTCH1-201ENST00000331920 HSCBQ8IWL3 235 aa21.04■□□□□ 0.96
PTCH1-201ENST00000331920 NOP58Q9Y2X3 529 aaKnown RBP21.04■□□□□ 0.96
PTCH1-201ENST00000331920 CREBRFQ8IUR6 639 aa21.03■□□□□ 0.96
PTCH1-201ENST00000331920 PATL2C9JE40 543 aaKnown RBP21.03■□□□□ 0.96
PTCH1-201ENST00000331920 MAPK8IP3Q9UPT6 1336 aa21.03■□□□□ 0.96
PTCH1-201ENST00000331920 RGL3Q3MIN7 710 aa21.02■□□□□ 0.96
PTCH1-201ENST00000331920 MIER1Q8N108 512 aa21.02■□□□□ 0.95
PTCH1-201ENST00000331920 GOLGA6L1Q8N7Z2 621 aa21.02■□□□□ 0.95
PTCH1-201ENST00000331920 KRI1Q8N9T8 703 aaKnown RBP21■□□□□ 0.95
PTCH1-201ENST00000331920 KNSTRNQ9Y448 316 aa20.97■□□□□ 0.95
PTCH1-201ENST00000331920 WWC1Q8IX03 1113 aa20.97■□□□□ 0.95
PTCH1-201ENST00000331920 GZF1Q9H116 711 aaPredicted RBP20.96■□□□□ 0.95
PTCH1-201ENST00000331920 SOX12O15370 315 aa20.96■□□□□ 0.95
PTCH1-201ENST00000331920 TSPY4P0CV99 314 aa20.95■□□□□ 0.94
PTCH1-201ENST00000331920 TSPY10P0CW01 314 aa20.95■□□□□ 0.94
PTCH1-201ENST00000331920 MCCP23508 829 aa20.95■□□□□ 0.94
PTCH1-201ENST00000331920 APBB1O00213 710 aa20.94■□□□□ 0.94
PTCH1-201ENST00000331920 HSP90B1P14625 803 aaKnown RBP20.93■□□□□ 0.94
PTCH1-201ENST00000331920 CALRP27797 417 aaKnown RBP20.93■□□□□ 0.94
PTCH1-201ENST00000331920 EIF4G2P78344 907 aaKnown RBP eCLIP20.92■□□□□ 0.944e-7■□□□□ 8.6
PTCH1-201ENST00000331920 U2SURPO15042 1029 aaKnown RBP20.92■□□□□ 0.94
PTCH1-201ENST00000331920 DEKP35659 375 aaKnown RBP20.87■□□□□ 0.93
PTCH1-201ENST00000331920 ZNF330Q9Y3S2 320 aaPredicted RBP20.86■□□□□ 0.93
PTCH1-201ENST00000331920 CEP89Q96ST8 783 aa20.85■□□□□ 0.93
PTCH1-201ENST00000331920 CC2D1BQ5T0F9 858 aaKnown RBP20.85■□□□□ 0.93
PTCH1-201ENST00000331920 RRP7BPQ9NSQ0 103 aa20.85■□□□□ 0.93
PTCH1-201ENST00000331920 SETQ01105 290 aaPredicted RBP20.85■□□□□ 0.93
PTCH1-201ENST00000331920 KCNH8Q96L42 1107 aa20.84■□□□□ 0.93
PTCH1-201ENST00000331920 VPS53Q5VIR6 699 aa20.83■□□□□ 0.93
PTCH1-201ENST00000331920 RASSF8Q8NHQ8 419 aa20.83■□□□□ 0.92
PTCH1-201ENST00000331920 KIAA1211Q6ZU35 1233 aa20.82■□□□□ 0.92
PTCH1-201ENST00000331920 B4GALNT3Q6L9W6 998 aa20.82■□□□□ 0.92
PTCH1-201ENST00000331920 NUDCQ9Y266 331 aa20.82■□□□□ 0.92
PTCH1-201ENST00000331920 TPM4P67936 248 aa20.81■□□□□ 0.92
PTCH1-201ENST00000331920 POGKQ9P215 609 aa20.81■□□□□ 0.92
PTCH1-201ENST00000331920 CHMP4BQ9H444 224 aaKnown RBP20.78■□□□□ 0.92
PTCH1-201ENST00000331920 PES1O00541 588 aaKnown RBP20.77■□□□□ 0.92
PTCH1-201ENST00000331920 CSRNP3Q8WYN3 585 aa20.76■□□□□ 0.91
PTCH1-201ENST00000331920 PTMSP20962 102 aa20.75■□□□□ 0.91
PTCH1-201ENST00000331920 TMX4Q9H1E5 349 aaPredicted RBP20.75■□□□□ 0.91
PTCH1-201ENST00000331920 TAF7LQ5H9L4 462 aa20.72■□□□□ 0.91
PTCH1-201ENST00000331920 CHMP3Q9Y3E7 222 aa20.72■□□□□ 0.91
PTCH1-201ENST00000331920 G3V3G9 751 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms