RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 RAB3GAP2Q9H2M9 1393 aa25.36■■□□□ 1.65
COL9A1-201ENST00000320755 TIAM1Q13009 1591 aa25.34■■□□□ 1.65
COL9A1-201ENST00000320755 PHLDB1Q86UU1 1377 aa25.33■■□□□ 1.65
COL9A1-201ENST00000320755 FHOD3Q2V2M9 1422 aa25.33■■□□□ 1.65
COL9A1-201ENST00000320755 LRRC9Q6ZRR7 1453 aa25.3■■□□□ 1.64
COL9A1-201ENST00000320755 POLA1P09884 1462 aaPredicted RBP25.3■■□□□ 1.64
COL9A1-201ENST00000320755 TOPBP1Q92547 1522 aa25.28■■□□□ 1.64
COL9A1-201ENST00000320755 FHAD1B1AJZ9 1412 aa25.28■■□□□ 1.64
COL9A1-201ENST00000320755 DNAJC5BQ9UF47 199 aa25.25■■□□□ 1.63
COL9A1-201ENST00000320755 DNMBPQ6XZF7 1577 aa25.24■■□□□ 1.63
COL9A1-201ENST00000320755 SIN3AQ96ST3 1273 aa25.23■■□□□ 1.63
COL9A1-201ENST00000320755 TDRD9Q8NDG6 1382 aaKnown RBP25.23■■□□□ 1.63
COL9A1-201ENST00000320755 SETD5Q9C0A6 1442 aa25.21■■□□□ 1.63
COL9A1-201ENST00000320755 ABCA10Q8WWZ4 1543 aa25.21■■□□□ 1.63
COL9A1-201ENST00000320755 PCF11O94913 1555 aaKnown RBP25.2■■□□□ 1.62
COL9A1-201ENST00000320755 MAP3K1Q13233 1512 aa25.18■■□□□ 1.62
COL9A1-201ENST00000320755 MAPKBP1O60336 1514 aa25.11■■□□□ 1.61
COL9A1-201ENST00000320755 URB2Q14146 1524 aaKnown RBP25.09■■□□□ 1.61
COL9A1-201ENST00000320755 CASKIN1Q8WXD9 1431 aa25.06■■□□□ 1.6
COL9A1-201ENST00000320755 HIRIP3Q9BW71 556 aaPredicted RBP25.05■■□□□ 1.6
COL9A1-201ENST00000320755 MTUS2Q5JR59 1369 aa25.04■■□□□ 1.6
COL9A1-201ENST00000320755 FYCO1Q9BQS8 1478 aa25.04■■□□□ 1.6
COL9A1-201ENST00000320755 CFAP43Q8NDM7 1665 aa25.03■■□□□ 1.6
COL9A1-201ENST00000320755 EFCAB5A4FU69 1503 aa25■■□□□ 1.59
COL9A1-201ENST00000320755 KCNH8Q96L42 1107 aa25■■□□□ 1.59
COL9A1-201ENST00000320755 FMN1Q68DA7 1419 aa25■■□□□ 1.59
COL9A1-201ENST00000320755 CUL7Q14999 1698 aa25■■□□□ 1.59
COL9A1-201ENST00000320755 DDX10Q13206 875 aaKnown RBP24.99■■□□□ 1.59
COL9A1-201ENST00000320755 GAPVD1Q14C86 1478 aa24.99■■□□□ 1.59
COL9A1-201ENST00000320755 ARID3CA6NKF2 412 aa24.96■■□□□ 1.59
COL9A1-201ENST00000320755 PDS5BQ9NTI5 1447 aa24.96■■□□□ 1.59
COL9A1-201ENST00000320755 LAMC3Q9Y6N6 1575 aa24.96■■□□□ 1.59
COL9A1-201ENST00000320755 CTTNBP2Q8WZ74 1663 aa24.95■■□□□ 1.58
COL9A1-201ENST00000320755 WDR97A6NE52 1622 aa24.94■■□□□ 1.58
COL9A1-201ENST00000320755 FGD6Q6ZV73 1430 aa24.92■■□□□ 1.58
COL9A1-201ENST00000320755 AQRO60306 1485 aaKnown RBP eCLIP24.91■■□□□ 1.58
COL9A1-201ENST00000320755 SNAPC4Q5SXM2 1469 aa24.88■■□□□ 1.57
COL9A1-201ENST00000320755 CHIC2Q9UKJ5 165 aa24.87■■□□□ 1.57
COL9A1-201ENST00000320755 PPP1R15AO75807 674 aaPredicted RBP24.85■■□□□ 1.57
COL9A1-201ENST00000320755 PTPRKQ15262 1439 aa24.84■■□□□ 1.57
COL9A1-201ENST00000320755 ABCA5Q8WWZ7 1642 aa24.83■■□□□ 1.57
COL9A1-201ENST00000320755 RRP7BPQ9NSQ0 103 aa24.82■■□□□ 1.56
COL9A1-201ENST00000320755 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.81■■□□□ 1.56
COL9A1-201ENST00000320755 NCOA2Q15596 1464 aa24.81■■□□□ 1.56
COL9A1-201ENST00000320755 TONSLQ96HA7 1378 aa24.8■■□□□ 1.56
COL9A1-201ENST00000320755 KIF21AQ7Z4S6 1674 aa24.79■■□□□ 1.56
COL9A1-201ENST00000320755 CCDC18Q5T9S5 1454 aa24.79■■□□□ 1.56
COL9A1-201ENST00000320755 TIMELESSQ9UNS1 1208 aa24.77■■□□□ 1.56
COL9A1-201ENST00000320755 MYOM3Q5VTT5 1437 aa24.75■■□□□ 1.55
COL9A1-201ENST00000320755 SUPT16HQ9Y5B9 1047 aaKnown RBP24.75■■□□□ 1.55
COL9A1-201ENST00000320755 GRIN2BQ13224 1484 aa24.75■■□□□ 1.55
COL9A1-201ENST00000320755 SAMD9Q5K651 1589 aa24.75■■□□□ 1.55
COL9A1-201ENST00000320755 TRIM52Q96A61 297 aa24.73■■□□□ 1.55
COL9A1-201ENST00000320755 LRRIQ1Q96JM4 1722 aa24.73■■□□□ 1.55
COL9A1-201ENST00000320755 HFM1A2PYH4 1435 aa24.7■■□□□ 1.55
COL9A1-201ENST00000320755 NAIPQ13075 1403 aa24.69■■□□□ 1.54
COL9A1-201ENST00000320755 UACAQ9BZF9 1416 aa24.67■■□□□ 1.54
COL9A1-201ENST00000320755 TARBP1Q13395 1621 aaKnown RBP24.66■■□□□ 1.54
COL9A1-201ENST00000320755 MAGI3Q5TCQ9 1506 aa24.65■■□□□ 1.54
COL9A1-201ENST00000320755 PTPN23Q9H3S7 1636 aa24.64■■□□□ 1.54
COL9A1-201ENST00000320755 SUPT6HQ7KZ85 1726 aaKnown RBP24.64■■□□□ 1.54
COL9A1-201ENST00000320755 ANP32CO43423 234 aa24.63■■□□□ 1.53
COL9A1-201ENST00000320755 EHBP1L1Q8N3D4 1523 aa24.62■■□□□ 1.53
COL9A1-201ENST00000320755 CDK13Q14004 1512 aaKnown RBP24.59■■□□□ 1.53
COL9A1-201ENST00000320755 FOXD1Q16676 465 aa24.58■■□□□ 1.53
COL9A1-201ENST00000320755 BCANQ96GW7 911 aa24.58■■□□□ 1.53
COL9A1-201ENST00000320755 UGGT2Q9NYU1 1516 aa24.57■■□□□ 1.52
COL9A1-201ENST00000320755 IQGAP2Q13576 1575 aa24.56■■□□□ 1.52
COL9A1-201ENST00000320755 EPRSP07814 1512 aaKnown RBP24.55■■□□□ 1.52
COL9A1-201ENST00000320755 ZNF608Q9ULD9 1512 aaPredicted RBP24.54■■□□□ 1.52
COL9A1-201ENST00000320755 THOC2Q8NI27 1593 aaKnown RBP24.54■■□□□ 1.52
COL9A1-201ENST00000320755 PBRM1Q86U86 1689 aa24.53■■□□□ 1.52
COL9A1-201ENST00000320755 MRC2Q9UBG0 1479 aa24.52■■□□□ 1.52
COL9A1-201ENST00000320755 FBLN2P98095 1184 aa24.5■■□□□ 1.51
COL9A1-201ENST00000320755 HECW1Q76N89 1606 aa24.49■■□□□ 1.51
COL9A1-201ENST00000320755 ZNF644Q9H582 1327 aaPredicted RBP24.49■■□□□ 1.51
COL9A1-201ENST00000320755 MPHOSPH9Q99550 1183 aa24.49■■□□□ 1.51
COL9A1-201ENST00000320755 ADAMTS12P58397 1594 aa24.48■■□□□ 1.51
COL9A1-201ENST00000320755 FKBP8Q14318 412 aa24.48■■□□□ 1.51
COL9A1-201ENST00000320755 ARHGEF11O15085 1522 aa24.46■■□□□ 1.51
COL9A1-201ENST00000320755 CCER2I3L3R5 266 aa24.44■■□□□ 1.5
COL9A1-201ENST00000320755 HSPA5P11021 654 aaKnown RBP24.43■■□□□ 1.5
COL9A1-201ENST00000320755 KDM6BO15054 1643 aa24.42■■□□□ 1.5
COL9A1-201ENST00000320755 L3MBTL2Q969R5 705 aa24.41■■□□□ 1.5
COL9A1-201ENST00000320755 TCOF1Q13428 1488 aaKnown RBP24.4■■□□□ 1.5
COL9A1-201ENST00000320755 WDR62O43379 1518 aa24.39■■□□□ 1.5
COL9A1-201ENST00000320755 ZNF777Q9ULD5 760 aaPredicted RBP24.39■■□□□ 1.5
COL9A1-201ENST00000320755 CHMP7Q8WUX9 453 aaPredicted RBP24.38■■□□□ 1.49
COL9A1-201ENST00000320755 DENND4BO75064 1496 aaPredicted RBP24.37■■□□□ 1.49
COL9A1-201ENST00000320755 MIA2Q96PC5 1412 aa24.37■■□□□ 1.49
COL9A1-201ENST00000320755 CDK11AQ9UQ88 783 aaPredicted RBP24.36■■□□□ 1.49
COL9A1-201ENST00000320755 IFT140Q96RY7 1462 aa24.36■■□□□ 1.49
COL9A1-201ENST00000320755 EIF4G2P78344 907 aaKnown RBP eCLIP24.35■■□□□ 1.49
COL9A1-201ENST00000320755 SLC4A1APQ9BWU0 796 aaKnown RBP24.35■■□□□ 1.49
COL9A1-201ENST00000320755 WASHC2AQ641Q2 1341 aa24.34■■□□□ 1.49
COL9A1-201ENST00000320755 KDM5BQ9UGL1 1544 aa24.34■■□□□ 1.49
COL9A1-201ENST00000320755 NEFLP07196 543 aa24.33■■□□□ 1.49
COL9A1-201ENST00000320755 KIAA0586Q9BVV6 1533 aa24.33■■□□□ 1.49
COL9A1-201ENST00000320755 DISP1Q96F81 1524 aa24.32■■□□□ 1.48
COL9A1-201ENST00000320755 CFDP1Q9UEE9 299 aaPredicted RBP24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms