RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 CSRNP3Q8WYN3 585 aa11.55□□□□□ -0.56
USF3-201ENST00000316407 SUPT16HQ9Y5B9 1047 aaKnown RBP11.54□□□□□ -0.56
USF3-201ENST00000316407 CCDC180Q9P1Z9 1646 aa11.52□□□□□ -0.56
USF3-201ENST00000316407 TULP1O00294 542 aaPredicted RBP11.52□□□□□ -0.57
USF3-201ENST00000316407 TAOK2Q9UL54 1235 aa11.52□□□□□ -0.57
USF3-201ENST00000316407 MYH16Q9H6N6 1097 aa11.51□□□□□ -0.57
USF3-201ENST00000316407 P3H3Q8IVL6 736 aa11.51□□□□□ -0.57
USF3-201ENST00000316407 ZRSR1Q15695 479 aaKnown RBP11.5□□□□□ -0.57
USF3-201ENST00000316407 DCAF1Q9Y4B6 1507 aa11.5□□□□□ -0.57
USF3-201ENST00000316407 SPRYD3Q8NCJ5 442 aa11.49□□□□□ -0.57
USF3-201ENST00000316407 WDR43Q15061 677 aaKnown RBP eCLIP11.48□□□□□ -0.57
USF3-201ENST00000316407 RGS3P49796 1198 aa11.48□□□□□ -0.57
USF3-201ENST00000316407 PPM1GO15355 546 aaPredicted RBP11.47□□□□□ -0.57
USF3-201ENST00000316407 MSNP26038 577 aaKnown RBP11.47□□□□□ -0.57
USF3-201ENST00000316407 ZNF777Q9ULD5 760 aaPredicted RBP11.46□□□□□ -0.58
USF3-201ENST00000316407 GZF1Q9H116 711 aaPredicted RBP11.45□□□□□ -0.58
USF3-201ENST00000316407 CHAF1AQ13111 956 aaPredicted RBP11.44□□□□□ -0.58
USF3-201ENST00000316407 B4GALNT3Q6L9W6 998 aa11.42□□□□□ -0.58
USF3-201ENST00000316407 TNNT3P45378 269 aaPredicted RBP11.42□□□□□ -0.58
USF3-201ENST00000316407 SENP3Q9H4L4 574 aaPredicted RBP11.42□□□□□ -0.58
USF3-201ENST00000316407 RBM19Q9Y4C8 960 aaKnown RBP11.41□□□□□ -0.58
USF3-201ENST00000316407 HSP90AB1P08238 724 aaKnown RBP11.4□□□□□ -0.59
USF3-201ENST00000316407 DRC7Q8IY82 874 aa11.39□□□□□ -0.59
USF3-201ENST00000316407 VSIG10Q8N0Z9 540 aa11.38□□□□□ -0.59
USF3-201ENST00000316407 KDM2AQ9Y2K7 1162 aa11.37□□□□□ -0.59
USF3-201ENST00000316407 FBLN2P98095 1184 aa11.36□□□□□ -0.59
USF3-201ENST00000316407 FTSJ3Q8IY81 847 aaKnown RBP11.36□□□□□ -0.59
USF3-201ENST00000316407 GOLGA6L6A8MZA4 724 aa11.36□□□□□ -0.59
USF3-201ENST00000316407 CASC1Q6TDU7 716 aa11.36□□□□□ -0.59
USF3-201ENST00000316407 TIMELESSQ9UNS1 1208 aa11.35□□□□□ -0.59
USF3-201ENST00000316407 PNNQ9H307 717 aaKnown RBP11.35□□□□□ -0.59
USF3-201ENST00000316407 A0A0U1RQG5 324 aaPredicted RBP11.35□□□□□ -0.59
USF3-201ENST00000316407 CHGAP10645 457 aaKnown RBP11.34□□□□□ -0.59
USF3-201ENST00000316407 PLPPR3Q6T4P5 718 aa11.34□□□□□ -0.59
USF3-201ENST00000316407 HSP90AA2PQ14568 343 aaPredicted RBP11.34□□□□□ -0.59
USF3-201ENST00000316407 L1TD1Q5T7N2 865 aaKnown RBP11.34□□□□□ -0.59
USF3-201ENST00000316407 PLEKHG5O94827 1062 aa11.33□□□□□ -0.6
USF3-201ENST00000316407 PPP4R2Q9NY27 417 aa11.32□□□□□ -0.6
USF3-201ENST00000316407 CHIC2Q9UKJ5 165 aa11.32□□□□□ -0.6
USF3-201ENST00000316407 MYO15BQ96JP2 1530 aa11.32□□□□□ -0.6
USF3-201ENST00000316407 NCBP3Q53F19 620 aaKnown RBP11.31□□□□□ -0.6
USF3-201ENST00000316407 A0A0G2JS52 829 aa11.31□□□□□ -0.6
USF3-201ENST00000316407 SLKQ9H2G2 1235 aaPredicted RBP11.29□□□□□ -0.6
USF3-201ENST00000316407 NAP1L2Q9ULW6 460 aaPredicted RBP11.29□□□□□ -0.6
USF3-201ENST00000316407 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.28□□□□□ -0.6
USF3-201ENST00000316407 HSCBQ8IWL3 235 aa11.28□□□□□ -0.6
USF3-201ENST00000316407 NEUROD2Q15784 382 aa11.27□□□□□ -0.6
USF3-201ENST00000316407 FRAT1Q92837 279 aaPredicted RBP11.27□□□□□ -0.6
USF3-201ENST00000316407 STAG3Q9UJ98 1225 aa11.24□□□□□ -0.61
USF3-201ENST00000316407 GOLGA6L4A6NEF3 574 aa11.24□□□□□ -0.61
USF3-201ENST00000316407 NRDCO43847 1150 aa11.23□□□□□ -0.61
USF3-201ENST00000316407 NOC3LQ8WTT2 800 aaKnown RBP11.23□□□□□ -0.61
USF3-201ENST00000316407 KIAA2012Q0VF49 1180 aa11.22□□□□□ -0.61
USF3-201ENST00000316407 TSHZ2Q9NRE2 1034 aa11.22□□□□□ -0.61
USF3-201ENST00000316407 FGD1P98174 961 aa11.22□□□□□ -0.61
USF3-201ENST00000316407 CLSTN1O94985 981 aa11.22□□□□□ -0.61
USF3-201ENST00000316407 EIF4G2P78344 907 aaKnown RBP eCLIP11.21□□□□□ -0.61
USF3-201ENST00000316407 RSPH6AQ9H0K4 717 aa11.21□□□□□ -0.61
USF3-201ENST00000316407 KCNJ4P48050 445 aa11.19□□□□□ -0.62
USF3-201ENST00000316407 GOLGA6L3A6NEY3 463 aa11.19□□□□□ -0.62
USF3-201ENST00000316407 PDE4CQ08493 712 aa11.17□□□□□ -0.62
USF3-201ENST00000316407 ZNF771Q7L3S4 317 aaPredicted RBP11.17□□□□□ -0.62
USF3-201ENST00000316407 PTMSP20962 102 aa11.16□□□□□ -0.62
USF3-201ENST00000316407 C14orf37Q86TY3 774 aa11.16□□□□□ -0.62
USF3-201ENST00000316407 CC2D1BQ5T0F9 858 aaKnown RBP11.15□□□□□ -0.62
USF3-201ENST00000316407 PATL2C9JE40 543 aaKnown RBP11.15□□□□□ -0.63
USF3-201ENST00000316407 GOLGA6L1Q8N7Z2 621 aa11.15□□□□□ -0.63
USF3-201ENST00000316407 FOXD4L1Q9NU39 408 aa11.14□□□□□ -0.63
USF3-201ENST00000316407 PKNOX2Q96KN3 472 aa11.14□□□□□ -0.63
USF3-201ENST00000316407 OS9Q13438 667 aaPredicted RBP11.14□□□□□ -0.63
USF3-201ENST00000316407 RRP7BPQ9NSQ0 103 aa11.13□□□□□ -0.63
USF3-201ENST00000316407 KNSTRNQ9Y448 316 aa11.13□□□□□ -0.63
USF3-201ENST00000316407 ANO8Q9HCE9 1232 aaPredicted RBP11.12□□□□□ -0.63
USF3-201ENST00000316407 IPO9Q96P70 1041 aaKnown RBP11.12□□□□□ -0.63
USF3-201ENST00000316407 APBB1O00213 710 aa11.12□□□□□ -0.63
USF3-201ENST00000316407 GBP4Q96PP9 640 aa11.12□□□□□ -0.63
USF3-201ENST00000316407 CALRP27797 417 aaKnown RBP11.12□□□□□ -0.63
USF3-201ENST00000316407 PABPN1Q86U42 306 aaKnown RBP eCLIP11.11□□□□□ -0.63
USF3-201ENST00000316407 GNL2Q13823 731 aaKnown RBP11.1□□□□□ -0.63
USF3-201ENST00000316407 ESF1Q9H501 851 aaKnown RBP11.1□□□□□ -0.63
USF3-201ENST00000316407 FAM13BQ9NYF5 915 aa11.1□□□□□ -0.63
USF3-201ENST00000316407 PRKCSHP14314 528 aaPredicted RBP11.1□□□□□ -0.63
USF3-201ENST00000316407 SETQ01105 290 aaPredicted RBP11.1□□□□□ -0.63
USF3-201ENST00000316407 FOXD4L5Q5VV16 416 aaPredicted RBP11.1□□□□□ -0.63
USF3-201ENST00000316407 FOXD4L4Q8WXT5 416 aaPredicted RBP11.1□□□□□ -0.63
USF3-201ENST00000316407 SCRIBQ14160 1630 aa11.09□□□□□ -0.63
USF3-201ENST00000316407 BCL11BQ9C0K0 894 aaPredicted RBP11.08□□□□□ -0.64
USF3-201ENST00000316407 PODXL2Q9NZ53 605 aa11.08□□□□□ -0.64
USF3-201ENST00000316407 RGL3Q3MIN7 710 aa11.08□□□□□ -0.64
USF3-201ENST00000316407 NOL8Q76FK4 1167 aaKnown RBP11.08□□□□□ -0.64
USF3-201ENST00000316407 MAPK8IP2Q13387 824 aaPredicted RBP11.06□□□□□ -0.64
USF3-201ENST00000316407 MFAP1P55081 439 aaKnown RBP11.06□□□□□ -0.64
USF3-201ENST00000316407 SLC4A3P48751 1232 aa11.06□□□□□ -0.64
USF3-201ENST00000316407 APPP05067 770 aa11.05□□□□□ -0.64
USF3-201ENST00000316407 CCAR2Q8N163 923 aaKnown RBP11.05□□□□□ -0.64
USF3-201ENST00000316407 CFAP53Q96M91 514 aa11.05□□□□□ -0.64
USF3-201ENST00000316407 SYAP1Q96A49 352 aaPredicted RBP11.04□□□□□ -0.64
USF3-201ENST00000316407 CLIP1P30622 1438 aa11.04□□□□□ -0.64
USF3-201ENST00000316407 MAPK8IP3Q9UPT6 1336 aa11.04□□□□□ -0.64
USF3-201ENST00000316407 GSE1Q14687 1217 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 134.8 ms