RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 CDCA8Q53HL2 280 aa20.14■□□□□ 0.82
HCFC1-201ENST00000310441 ABCC9O60706 1549 aa20.14■□□□□ 0.81
HCFC1-201ENST00000310441 CFAP53Q96M91 514 aa20.11■□□□□ 0.81
HCFC1-201ENST00000310441 FTSJ3Q8IY81 847 aaKnown RBP20.11■□□□□ 0.81
HCFC1-201ENST00000310441 P3H3Q8IVL6 736 aa20.09■□□□□ 0.81
HCFC1-201ENST00000310441 SALL2Q9Y467 1007 aaPredicted RBP20.09■□□□□ 0.81
HCFC1-201ENST00000310441 CFAP44Q96MT7 982 aa20.08■□□□□ 0.81
HCFC1-201ENST00000310441 TSPY4P0CV99 314 aa20.07■□□□□ 0.8
HCFC1-201ENST00000310441 TSPY10P0CW01 314 aa20.07■□□□□ 0.8
HCFC1-201ENST00000310441 NAP1L5Q96NT1 182 aaPredicted RBP20.06■□□□□ 0.8
HCFC1-201ENST00000310441 MS4A1P11836 297 aa20.06■□□□□ 0.8
HCFC1-201ENST00000310441 SCRIBQ14160 1630 aa20.06■□□□□ 0.8
HCFC1-201ENST00000310441 EIF4G2P78344 907 aaKnown RBP eCLIP20.05■□□□□ 0.8
HCFC1-201ENST00000310441 SCAF1Q9H7N4 1312 aaKnown RBP20.03■□□□□ 0.8
HCFC1-201ENST00000310441 ARID3CA6NKF2 412 aa20.03■□□□□ 0.8
HCFC1-201ENST00000310441 MTUS2Q5JR59 1369 aa20.02■□□□□ 0.8
HCFC1-201ENST00000310441 PABPN1Q86U42 306 aaKnown RBP eCLIP20.01■□□□□ 0.79
HCFC1-201ENST00000310441 RSF1Q96T23 1441 aaPredicted RBP20■□□□□ 0.79
HCFC1-201ENST00000310441 PTMSP20962 102 aa20■□□□□ 0.79
HCFC1-201ENST00000310441 PNNQ9H307 717 aaKnown RBP19.98■□□□□ 0.79
HCFC1-201ENST00000310441 MSNP26038 577 aaKnown RBP19.96■□□□□ 0.79
HCFC1-201ENST00000310441 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.95■□□□□ 0.784e-6■■■□□ 17.1
HCFC1-201ENST00000310441 KNSTRNQ9Y448 316 aa19.95■□□□□ 0.78
HCFC1-201ENST00000310441 A0A0G2JS52 829 aa19.94■□□□□ 0.78
HCFC1-201ENST00000310441 KIAA2012Q0VF49 1180 aa19.94■□□□□ 0.78
HCFC1-201ENST00000310441 USP35Q9P2H5 1018 aa19.94■□□□□ 0.78
HCFC1-201ENST00000310441 FGD1P98174 961 aa19.93■□□□□ 0.78
HCFC1-201ENST00000310441 HSP90AB1P08238 724 aaKnown RBP19.92■□□□□ 0.78
HCFC1-201ENST00000310441 GOLGA6L4A6NEF3 574 aa19.92■□□□□ 0.78
HCFC1-201ENST00000310441 PPP1R15AO75807 674 aaPredicted RBP19.92■□□□□ 0.78
HCFC1-201ENST00000310441 MCCP23508 829 aa19.9■□□□□ 0.78
HCFC1-201ENST00000310441 MAPK8IP3Q9UPT6 1336 aa19.87■□□□□ 0.77
HCFC1-201ENST00000310441 KDM2AQ9Y2K7 1162 aa19.87■□□□□ 0.77
HCFC1-201ENST00000310441 C14orf37Q86TY3 774 aa19.86■□□□□ 0.77
HCFC1-201ENST00000310441 HSCBQ8IWL3 235 aa19.86■□□□□ 0.77
HCFC1-201ENST00000310441 NOP58Q9Y2X3 529 aaKnown RBP19.86■□□□□ 0.77
HCFC1-201ENST00000310441 GOLGA2Q08379 1002 aa19.85■□□□□ 0.77
HCFC1-201ENST00000310441 NUDCQ9Y266 331 aa19.85■□□□□ 0.77
HCFC1-201ENST00000310441 KCNJ4P48050 445 aa19.84■□□□□ 0.77
HCFC1-201ENST00000310441 HAP1P54257 671 aaPredicted RBP19.82■□□□□ 0.76
HCFC1-201ENST00000310441 PLCB2Q00722 1185 aa19.82■□□□□ 0.76
HCFC1-201ENST00000310441 EEA1Q15075 1411 aa19.81■□□□□ 0.76
HCFC1-201ENST00000310441 PLPPR3Q6T4P5 718 aa19.8■□□□□ 0.76
HCFC1-201ENST00000310441 DRC7Q8IY82 874 aa19.8■□□□□ 0.76
HCFC1-201ENST00000310441 OS9Q13438 667 aaPredicted RBP19.79■□□□□ 0.76
HCFC1-201ENST00000310441 NPHP1O15259 732 aa19.79■□□□□ 0.76
HCFC1-201ENST00000310441 CLIP1P30622 1438 aa19.79■□□□□ 0.76
HCFC1-201ENST00000310441 TULP1O00294 542 aaPredicted RBP19.78■□□□□ 0.76
HCFC1-201ENST00000310441 NOC3LQ8WTT2 800 aaKnown RBP19.78■□□□□ 0.76
HCFC1-201ENST00000310441 PPP4R2Q9NY27 417 aa19.77■□□□□ 0.76
HCFC1-201ENST00000310441 CHIC2Q9UKJ5 165 aa19.77■□□□□ 0.75
HCFC1-201ENST00000310441 CCDC34Q96HJ3 373 aa19.76■□□□□ 0.75
HCFC1-201ENST00000310441 HTATSF1O43719 755 aaKnown RBP19.76■□□□□ 0.75
HCFC1-201ENST00000310441 IRX6P78412 446 aaPredicted RBP19.76■□□□□ 0.75
HCFC1-201ENST00000310441 SYAP1Q96A49 352 aaPredicted RBP19.76■□□□□ 0.75
HCFC1-201ENST00000310441 GOLGA6L1Q8N7Z2 621 aa19.73■□□□□ 0.75
HCFC1-201ENST00000310441 GOLGA3Q08378 1498 aa19.72■□□□□ 0.75
HCFC1-201ENST00000310441 ZBTB7CA1YPR0 619 aa19.72■□□□□ 0.75
HCFC1-201ENST00000310441 GNL2Q13823 731 aaKnown RBP19.72■□□□□ 0.75
HCFC1-201ENST00000310441 GBP4Q96PP9 640 aa19.7■□□□□ 0.74
HCFC1-201ENST00000310441 MIER1Q8N108 512 aa19.69■□□□□ 0.74
HCFC1-201ENST00000310441 TPM4P67936 248 aa19.69■□□□□ 0.74
HCFC1-201ENST00000310441 CLSTN1O94985 981 aa19.68■□□□□ 0.74
HCFC1-201ENST00000310441 NAP1L2Q9ULW6 460 aaPredicted RBP19.67■□□□□ 0.74
HCFC1-201ENST00000310441 TPRNQ4KMQ1 711 aa19.66■□□□□ 0.74
HCFC1-201ENST00000310441 TNNT3P45378 269 aaPredicted RBP19.65■□□□□ 0.74
HCFC1-201ENST00000310441 ARID4BQ4LE39 1312 aaPredicted RBP19.65■□□□□ 0.74
HCFC1-201ENST00000310441 CHMP4AQ9BY43 222 aa19.65■□□□□ 0.74
HCFC1-201ENST00000310441 KIAA1211Q6ZU35 1233 aa19.63■□□□□ 0.73
HCFC1-201ENST00000310441 CHMP7Q8WUX9 453 aaPredicted RBP19.63■□□□□ 0.73
HCFC1-201ENST00000310441 ZCCHC6Q5VYS8 1495 aaKnown RBP19.63■□□□□ 0.73
HCFC1-201ENST00000310441 CSPP1Q1MSJ5 1256 aa19.62■□□□□ 0.73
HCFC1-201ENST00000310441 LAS1LQ9Y4W2 734 aaKnown RBP19.62■□□□□ 0.73
HCFC1-201ENST00000310441 SUPT16HQ9Y5B9 1047 aaKnown RBP19.61■□□□□ 0.73
HCFC1-201ENST00000310441 PHF14O94880 888 aa19.6■□□□□ 0.73
HCFC1-201ENST00000310441 RGS3P49796 1198 aa19.6■□□□□ 0.73
HCFC1-201ENST00000310441 CARD11Q9BXL7 1154 aa19.59■□□□□ 0.73
HCFC1-201ENST00000310441 CALD1Q05682 793 aaKnown RBP19.58■□□□□ 0.73
HCFC1-201ENST00000310441 SETQ01105 290 aaPredicted RBP19.58■□□□□ 0.72
HCFC1-201ENST00000310441 KANK1Q14678 1352 aa19.57■□□□□ 0.72
HCFC1-201ENST00000310441 PLEKHD1A6NEE1 506 aa19.57■□□□□ 0.72
HCFC1-201ENST00000310441 RB1CC1Q8TDY2 1594 aa19.56■□□□□ 0.72
HCFC1-201ENST00000310441 IPO8O15397 1037 aaKnown RBP19.56■□□□□ 0.72
HCFC1-201ENST00000310441 FRAT1Q92837 279 aaPredicted RBP19.56■□□□□ 0.72
HCFC1-201ENST00000310441 A0A0U1RQG5 324 aaPredicted RBP19.55■□□□□ 0.72
HCFC1-201ENST00000310441 POGKQ9P215 609 aa19.54■□□□□ 0.72
HCFC1-201ENST00000310441 GPATCH3Q96I76 525 aa19.53■□□□□ 0.72
HCFC1-201ENST00000310441 HDGFP51858 240 aaKnown RBP19.53■□□□□ 0.72
HCFC1-201ENST00000310441 HDAC5Q9UQL6 1122 aa19.52■□□□□ 0.71
HCFC1-201ENST00000310441 RRP7BPQ9NSQ0 103 aa19.51■□□□□ 0.71
HCFC1-201ENST00000310441 FHAD1B1AJZ9 1412 aa19.5■□□□□ 0.71
HCFC1-201ENST00000310441 CEP164Q9UPV0 1460 aa19.5■□□□□ 0.71
HCFC1-201ENST00000310441 RTN4Q9NQC3 1192 aaKnown RBP19.49■□□□□ 0.71
HCFC1-201ENST00000310441 CEP162Q5TB80 1403 aa19.48■□□□□ 0.71
HCFC1-201ENST00000310441 TMF1P82094 1093 aa19.47■□□□□ 0.71
HCFC1-201ENST00000310441 TAOK2Q9UL54 1235 aa19.45■□□□□ 0.7
HCFC1-201ENST00000310441 CFDP1Q9UEE9 299 aaPredicted RBP19.45■□□□□ 0.7
HCFC1-201ENST00000310441 KIF3AQ9Y496 699 aa19.44■□□□□ 0.7
HCFC1-201ENST00000310441 AMER1Q5JTC6 1135 aaPredicted RBP19.44■□□□□ 0.7
HCFC1-201ENST00000310441 RTF1Q92541 710 aaKnown RBP19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms