RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 PELP1Q8IZL8 1130 aaKnown RBP25.48■■□□□ 1.67
HCFC1-201ENST00000310441 DCAF8L2P0C7V8 631 aa25.3■■□□□ 1.64
HCFC1-201ENST00000310441 CCER1Q8TC90 406 aaPredicted RBP24.23■■□□□ 1.47
HCFC1-201ENST00000310441 APLP2Q06481 763 aa24.11■■□□□ 1.45
HCFC1-201ENST00000310441 SUPT5HO00267 1087 aaKnown RBP24.11■■□□□ 1.45
HCFC1-201ENST00000310441 FAM9AQ8IZU1 332 aaPredicted RBP24.07■■□□□ 1.44
HCFC1-201ENST00000310441 MYT1Q01538 1121 aa24.04■■□□□ 1.44
HCFC1-201ENST00000310441 ERICH6Q7L0X2 663 aa24.03■■□□□ 1.44
HCFC1-201ENST00000310441 CENPBP07199 599 aaPredicted RBP23.79■■□□□ 1.4
HCFC1-201ENST00000310441 NISCHQ9Y2I1 1504 aa23.64■■□□□ 1.37
HCFC1-201ENST00000310441 ZEB1P37275 1124 aaPredicted RBP23.57■■□□□ 1.36
HCFC1-201ENST00000310441 NEFLP07196 543 aa23.4■■□□□ 1.34
HCFC1-201ENST00000310441 SHROOM4Q9ULL8 1493 aa23.37■■□□□ 1.33
HCFC1-201ENST00000310441 EHMT2Q96KQ7 1210 aa23.33■■□□□ 1.33
HCFC1-201ENST00000310441 YTHDC1Q96MU7 727 aaKnown RBP23.32■■□□□ 1.32
HCFC1-201ENST00000310441 DAXXQ9UER7 740 aaPredicted RBP23.05■■□□□ 1.28
HCFC1-201ENST00000310441 PCGF6Q9BYE7 350 aa23.04■■□□□ 1.28
HCFC1-201ENST00000310441 TTBK1Q5TCY1 1321 aaPredicted RBP22.76■■□□□ 1.23
HCFC1-201ENST00000310441 ATP1B4Q9UN42 357 aaPredicted RBP22.64■■□□□ 1.21
HCFC1-201ENST00000310441 TRIM41Q8WV44 630 aa22.61■■□□□ 1.21
HCFC1-201ENST00000310441 UBTFP17480 764 aaKnown RBP22.52■■□□□ 1.2
HCFC1-201ENST00000310441 RANGAP1P46060 587 aaPredicted RBP22.44■■□□□ 1.18
HCFC1-201ENST00000310441 RTL5Q5HYW3 569 aaPredicted RBP22.42■■□□□ 1.18
HCFC1-201ENST00000310441 ZNF316A6NFI3 1004 aaPredicted RBP22.4■■□□□ 1.18
HCFC1-201ENST00000310441 TRIM26Q12899 539 aaPredicted RBP22.2■■□□□ 1.14
HCFC1-201ENST00000310441 CLSPNQ9HAW4 1339 aa22.11■■□□□ 1.13
HCFC1-201ENST00000310441 MYT1LQ9UL68 1186 aa22.01■■□□□ 1.11
HCFC1-201ENST00000310441 POLR3GLQ9BT43 218 aa21.97■■□□□ 1.11
HCFC1-201ENST00000310441 HRCP23327 699 aa21.9■■□□□ 1.1
HCFC1-201ENST00000310441 ZBTB47Q9UFB7 747 aaPredicted RBP21.85■■□□□ 1.09
HCFC1-201ENST00000310441 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.81■■□□□ 1.08
HCFC1-201ENST00000310441 HNRNPUL2Q1KMD3 747 aaKnown RBP21.81■■□□□ 1.08
HCFC1-201ENST00000310441 SLC4A1APQ9BWU0 796 aaKnown RBP21.8■■□□□ 1.08
HCFC1-201ENST00000310441 ITGAEP38570 1179 aa21.68■■□□□ 1.06
HCFC1-201ENST00000310441 CDK11AQ9UQ88 783 aaPredicted RBP21.65■■□□□ 1.06
HCFC1-201ENST00000310441 DIEXFQ68CQ4 756 aaKnown RBP21.63■■□□□ 1.05
HCFC1-201ENST00000310441 ANP32BQ92688 251 aaKnown RBP21.59■■□□□ 1.05
HCFC1-201ENST00000310441 GLIPR1L2Q4G1C9 344 aa21.56■■□□□ 1.04
HCFC1-201ENST00000310441 PPARGC1BQ86YN6 1023 aaKnown RBP21.55■■□□□ 1.04
HCFC1-201ENST00000310441 NEFMP07197 916 aa21.49■■□□□ 1.03
HCFC1-201ENST00000310441 ANP32AP39687 249 aaKnown RBP21.47■■□□□ 1.03
HCFC1-201ENST00000310441 ANP32CO43423 234 aa21.46■■□□□ 1.03
HCFC1-201ENST00000310441 CANXP27824 592 aaKnown RBP21.44■■□□□ 1.02
HCFC1-201ENST00000310441 CNGB1Q14028 1251 aaPredicted RBP21.44■■□□□ 1.02
HCFC1-201ENST00000310441 CHIC1Q5VXU3 224 aa21.41■■□□□ 1.02
HCFC1-201ENST00000310441 FAM50AQ14320 339 aaKnown RBP21.27■■□□□ 1
HCFC1-201ENST00000310441 TRIM52Q96A61 297 aa21.24■□□□□ 0.99
HCFC1-201ENST00000310441 UPF2Q9HAU5 1272 aaKnown RBP21.24■□□□□ 0.99
HCFC1-201ENST00000310441 HSP90AA1P07900 732 aaKnown RBP21.22■□□□□ 0.99
HCFC1-201ENST00000310441 SLC24A1O60721 1099 aa21.16■□□□□ 0.98
HCFC1-201ENST00000310441 GTF3C3Q9Y5Q9 886 aa21.12■□□□□ 0.97
HCFC1-201ENST00000310441 NEUROD1Q13562 356 aa21.06■□□□□ 0.96
HCFC1-201ENST00000310441 EIF5BO60841 1220 aaKnown RBP21.06■□□□□ 0.96
HCFC1-201ENST00000310441 BCANQ96GW7 911 aa21.05■□□□□ 0.96
HCFC1-201ENST00000310441 ZNF326Q5BKZ1 582 aaKnown RBP20.99■□□□□ 0.95
HCFC1-201ENST00000310441 CDK11BP21127 795 aaKnown RBP20.98■□□□□ 0.95
HCFC1-201ENST00000310441 LOC105371045A0A1W2PR82 267 aa20.97■□□□□ 0.95
HCFC1-201ENST00000310441 BCL11AQ9H165 835 aa20.87■□□□□ 0.93
HCFC1-201ENST00000310441 ANP32EQ9BTT0 268 aa20.85■□□□□ 0.93
HCFC1-201ENST00000310441 NPM2Q86SE8 214 aaKnown RBP20.84■□□□□ 0.93
HCFC1-201ENST00000310441 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.84■□□□□ 0.93
HCFC1-201ENST00000310441 TNNT2P45379 298 aaPredicted RBP20.82■□□□□ 0.92
HCFC1-201ENST00000310441 ACIN1Q9UKV3 1341 aaKnown RBP20.78■□□□□ 0.92
HCFC1-201ENST00000310441 MYH16Q9H6N6 1097 aa20.71■□□□□ 0.91
HCFC1-201ENST00000310441 ESF1Q9H501 851 aaKnown RBP20.7■□□□□ 0.9
HCFC1-201ENST00000310441 TONSLQ96HA7 1378 aa20.69■□□□□ 0.9
HCFC1-201ENST00000310441 BECN1Q14457 450 aa20.65■□□□□ 0.9
HCFC1-201ENST00000310441 TRIM44Q96DX7 344 aaPredicted RBP20.63■□□□□ 0.89
HCFC1-201ENST00000310441 GOLGA6L22H0YM25 854 aa20.62■□□□□ 0.89
HCFC1-201ENST00000310441 NCLP19338 710 aaKnown RBP20.61■□□□□ 0.89
HCFC1-201ENST00000310441 DDRGK1Q96HY6 314 aa20.61■□□□□ 0.89
HCFC1-201ENST00000310441 CCDC136Q96JN2 1154 aa20.59■□□□□ 0.89
HCFC1-201ENST00000310441 FKBP8Q14318 412 aa20.56■□□□□ 0.88
HCFC1-201ENST00000310441 ZRSR1Q15695 479 aaKnown RBP20.53■□□□□ 0.88
HCFC1-201ENST00000310441 HNRNPUQ00839 825 aaKnown RBP eCLIP20.52■□□□□ 0.88
HCFC1-201ENST00000310441 STAG3Q9UJ98 1225 aa20.52■□□□□ 0.88
HCFC1-201ENST00000310441 WDR43Q15061 677 aaKnown RBP eCLIP20.51■□□□□ 0.877e-6■■■■■ 27.3
HCFC1-201ENST00000310441 TMC1Q8TDI8 760 aa20.48■□□□□ 0.87
HCFC1-201ENST00000310441 FBLN2P98095 1184 aa20.47■□□□□ 0.87
HCFC1-201ENST00000310441 NBR1Q14596 966 aa20.46■□□□□ 0.87
HCFC1-201ENST00000310441 CASC1Q6TDU7 716 aa20.45■□□□□ 0.86
HCFC1-201ENST00000310441 GOLGA6L6A8MZA4 724 aa20.41■□□□□ 0.86
HCFC1-201ENST00000310441 ERICH6BQ5W0A0 696 aa20.37■□□□□ 0.85
HCFC1-201ENST00000310441 DCAF1Q9Y4B6 1507 aa20.36■□□□□ 0.85
HCFC1-201ENST00000310441 FAM9BQ8IZU0 186 aa20.34■□□□□ 0.85
HCFC1-201ENST00000310441 ZNF777Q9ULD5 760 aaPredicted RBP20.34■□□□□ 0.85
HCFC1-201ENST00000310441 NRDCO43847 1150 aa20.34■□□□□ 0.85
HCFC1-201ENST00000310441 PTMAP06454 111 aaKnown RBP20.34■□□□□ 0.85
HCFC1-201ENST00000310441 ARXQ96QS3 562 aa20.34■□□□□ 0.85
HCFC1-201ENST00000310441 DNTTIP2Q5QJE6 756 aaKnown RBP20.3■□□□□ 0.84
HCFC1-201ENST00000310441 CHMP4BQ9H444 224 aaKnown RBP20.23■□□□□ 0.83
HCFC1-201ENST00000310441 CHAF1AQ13111 956 aaPredicted RBP20.23■□□□□ 0.83
HCFC1-201ENST00000310441 L1TD1Q5T7N2 865 aaKnown RBP20.23■□□□□ 0.83
HCFC1-201ENST00000310441 CHGAP10645 457 aaKnown RBP20.22■□□□□ 0.83
HCFC1-201ENST00000310441 NPM1P06748 294 aaKnown RBP eCLIP20.21■□□□□ 0.83
HCFC1-201ENST00000310441 MRS2Q9HD23 443 aa20.21■□□□□ 0.83
HCFC1-201ENST00000310441 PPM1GO15355 546 aaPredicted RBP20.2■□□□□ 0.82
HCFC1-201ENST00000310441 CSRNP3Q8WYN3 585 aa20.19■□□□□ 0.82
HCFC1-201ENST00000310441 DDX10Q13206 875 aaKnown RBP20.16■□□□□ 0.82
HCFC1-201ENST00000310441 CCDC180Q9P1Z9 1646 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms